Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Uii	42295	2024-08-08	2023-10-10	3.04	3.25	3.10	3.3	0.003	0.76	0.0	0.05	16.55	0.01	2.061	7.23	0.70	2.5	97.5	0.0	-1.06	0.72	0.79	2.15	3.2	0.003	0.60	0.0	0.04	16.90	0.00	1.950	9.98	3.14	2.2	97.8	0.0	0.23	0.30	0.71	0.80	2.13	21704	2743	13	0	9	0	0	logfile
✔	8WP8	37711	2024-08-04	2023-10-09	2.89	2.38	2.91	2.1	0.003	0.58	0.0	0.05	15.47	0.01	2.100	5.02	0.00	4.6	95.4	0.0	0.24	0.74	0.74	2.55	2.2	0.003	0.61	0.0	0.04	16.27	0.00	2.125	4.47	1.89	3.7	96.3	0.0	0.36	0.55	0.79	0.79	2.04	6539	780	7	0	14	0	0	logfile
✔	8WP9	37713	2024-08-07	2023-10-09	2.49	2.89	2.62	2.9	0.005	0.95	0.0	0.06	15.19	0.01	2.315	2.53	1.00	0.9	99.1	0.0	1.51	0.64	0.73	1.41	2.8	0.002	0.57	0.0	0.05	18.55	0.00	2.652	3.86	2.42	1.0	99.0	0.0	2.56	1.29	0.72	0.88	2.89	21432	2760	24	0	0	0	0	logfile
✔	8UHE	42278	2024-08-09	2023-10-09	2.78	2.06	2.93	2.1	0.010	1.17	0.0	0.06	19.11	0.01	2.105	13.49	4.23	2.9	96.9	0.2	-0.61	0.60	0.61	1.53	2.1	0.005	0.88	0.0	0.04	19.07	0.01	1.585	21.51	3.08	3.6	96.4	0.1	1.06	0.63	0.61	0.64	1.62	27048	3369	37	0	19	0	0	logfile
✔	8UHF	42279	2024-08-05	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.7	0.005	0.91	0.0	0.04	16.07	0.00	2.321	20.10	2.30	4.7	95.3	0.0	-0.33	1.24	0.63	0.81	0.65	12411	1739	9	0	0	0	0	logfile
✔	8Ui2	42286	2024-08-09	2023-10-09	2.73	3.05	2.90	3.1	0.004	0.52	0.0	0.04	17.61	0.01	2.187	5.03	1.35	3.5	96.5	0.0	-0.39	0.70	0.83	2.89	3.1	0.003	0.55	0.0	0.04	18.15	0.00	2.630	3.66	1.58	2.3	97.7	0.0	0.57	1.13	0.62	0.78	2.72	26568	3492	24	0	0	0	0	logfile
✔	8WoX	37701	2024-08-03	2023-10-08	2.75	2.45	3.23	2.2	0.003	0.53	0.0	0.04	13.94	0.00	2.099	4.19	0.00	4.3	95.7	0.0	0.02	0.77	0.83	3.39	2.2	0.003	0.60	0.0	0.04	16.25	0.00	2.121	4.68	2.50	3.6	96.4	0.0	0.48	0.49	0.76	0.83	3.05	6348	782	4	0	2	0	0	logfile
✔	8WP0	37705	2024-08-04	2023-10-08	3.4	3.57	3.31	3.5	0.005	1.11	2.0	0.06	11.22	0.01	1.379	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.6	0.003	0.69	0.0	0.04	14.50	0.00	2.055	4.80	1.43	6.0	94.0	0.0	-2.64	0.68	0.67	0.85	2.06	9372	1217	2	0	4	0	0	logfile
✔	8UHB	42268	2024-08-06	2023-10-08	3.35	4.22	3.36	3.8	0.004	0.62	0.0	0.04	14.11	0.00	2.015	9.46	0.00	5.9	94.1	0.0	-1.42	0.70	0.72	2.21	3.8	0.003	0.61	0.0	0.04	15.03	0.00	2.361	5.91	0.78	4.8	95.2	0.0	-0.01	0.78	0.72	0.80	1.88	16561	1075	6	0	1	0	8144	logfile
✔	8QRH	18614	2024-08-05	2023-10-07	3.6	3.69	3.47	3.7	0.003	0.72	0.0	0.05	12.21	0.01	2.255	2.66	0.00	3.6	96.4	0.0	-0.83	0.58	0.81	2.89	3.7	0.003	0.74	0.0	0.04	15.10	0.00	2.208	7.78	2.00	4.2	95.8	0.0	-0.33	0.74	0.59	0.82	2.24	12951	1689	9	0	3	0	0	logfile
✔	8WoT	37698	2024-08-04	2023-10-07	3.18	3.73	3.22	3.7	0.003	0.52	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.004	0.72	0.0	0.05	16.67	0.00	2.308	8.45	3.62	5.3	94.5	0.2	0.34	0.89	0.67	0.84	2.17	10672	1272	8	0	22	0	0	logfile
✔	8WoR	37696	2024-08-04	2023-10-07	2.66	3.15	2.79	3.1	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.004	0.69	0.0	0.04	15.16	0.00	1.930	5.72	3.70	4.6	95.4	0.0	1.17	0.31	0.64	0.84	2.90	11218	1294	10	0	35	4	0	logfile
✔	8WoS	37697	2024-08-04	2023-10-07	3.37	3.88	3.39	3.8	0.003	0.55	0.0	0.04	18.35	0.00	1.943	39.41	0.35	6.4	93.6	0.0	1.07	0.65	0.80	1.91	3.8	0.004	0.74	0.0	0.05	17.24	0.00	2.311	9.48	3.45	6.4	93.6	0.1	0.43	0.93	0.65	0.80	1.99	10672	1272	8	0	22	0	0	logfile
✔	8WoM	37692	2024-08-04	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.002	0.64	0.0	0.04	14.07	0.00	2.400	4.43	1.33	5.9	94.1	0.0	-2.74	0.72	0.66	0.82	1.78	9348	1217	2	0	1	0	0	logfile
✔	8WoQ	37695	2024-08-04	2023-10-07	2.85	3.57	2.89	3.4	0.004	0.82	0.0	0.05	15.76	0.01	2.046	7.66	3.96	4.8	95.1	0.1	1.00	0.65	0.84	3.05	3.4	0.003	0.74	0.0	0.04	14.94	0.00	1.998	5.86	2.07	4.6	95.4	0.0	1.13	0.89	0.65	0.84	3.15	11218	1294	10	0	35	4	0	logfile
✔	8Woo	37694	2024-08-04	2023-10-07	3.9	4.05	3.88	4.0	0.005	1.14	7.0	0.08	13.30	0.01	1.870	6.21	0.00	7.3	92.7	0.0	-6.18	0.64	0.81	2.72	4.0	0.002	0.68	0.0	0.04	15.13	0.00	2.088	6.05	1.43	6.8	93.2	0.0	-2.32	0.82	0.64	0.80	1.49	9412	1217	2	0	5	0	0	logfile
✔	8Woi	37690	2024-08-04	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.67	0.0	0.04	13.85	0.00	2.444	3.96	1.42	7.5	92.5	0.0	-2.63	0.64	0.68	0.85	2.63	9324	1217	1	0	0	0	0	logfile
✔	8QR0	18610	2024-08-04	2023-10-06	2.5	2.61	2.54	2.6	0.014	1.67	10.0	0.09	16.28	0.02	2.361	5.64	4.26	1.1	98.9	0.0	-1.18	0.72	0.92	5.12	2.6	0.003	0.61	0.0	0.04	15.45	0.00	2.543	6.41	1.85	0.8	99.2	0.0	3.68	0.33	0.70	0.89	3.63	11598	1360	15	0	41	145	0	logfile
✔	8Wo7	37681	2024-08-03	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.58	0.0	0.04	15.18	0.00	2.488	7.20	1.63	3.3	96.5	0.2	1.86	0.37	0.62	0.87	2.36	8118	1080	4	0	4	0	0	logfile
✔	8UGY	42241	2024-08-03	2023-10-06	3.31	3.49	3.30	3.5	0.003	0.56	0.0	0.04	14.65	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.003	0.56	0.0	0.04	15.02	0.00	2.443	6.42	2.70	3.3	96.6	0.1	0.82	0.31	0.63	0.82	1.79	6970	864	5	0	6	1	0	logfile

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