Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QR0	18610	2024-08-04	2023-10-06	2.5	2.61	2.54	2.6	0.014	1.67	10.0	0.09	16.28	0.02	2.361	5.64	4.26	1.1	98.9	0.0	-1.18	0.72	0.92	5.12	2.6	0.003	0.61	0.0	0.04	15.45	0.00	2.543	6.41	1.85	0.8	99.2	0.0	3.68	0.33	0.70	0.89	3.63	11598	1360	15	0	41	145	0	logfile
✔	8UGY	42241	2024-08-03	2023-10-06	3.31	3.49	3.30	3.5	0.003	0.56	0.0	0.04	14.65	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.003	0.56	0.0	0.04	15.02	0.00	2.443	6.42	2.70	3.3	96.6	0.1	0.82	0.31	0.63	0.82	1.79	6970	864	5	0	6	1	0	logfile
✔	8WNT	37672	2024-08-03	2023-10-06	3.42	3.69	3.43	3.7	0.004	0.67	0.0	0.04	16.76	0.00	2.232	8.37	0.77	5.6	94.2	0.2	0.29	0.60	0.76	1.32	3.7	0.003	0.66	0.0	0.04	16.69	0.00	2.533	7.90	3.07	5.7	94.3	0.0	1.33	1.15	0.59	0.77	0.89	7309	933	5	0	5	0	0	logfile
✔	8UH3	42245	2024-08-03	2023-10-06	3.31	3.52	3.29	3.5	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.84	0.11	2.7	97.3	0.0	0.42	0.68	0.79	2.84	3.5	0.004	0.62	0.0	0.04	15.82	0.00	2.503	8.90	2.75	2.9	97.1	0.0	0.44	2.19	0.68	0.83	2.41	8759	1098	7	0	5	1	0	logfile
✔	8WNP	37670	2024-08-05	2023-10-06	3.1	3.37	3.16	3.4	0.024	1.04	0.0	0.04	14.69	0.01	1.951	6.73	0.38	7.1	92.8	0.1	-1.41	0.58	0.65	1.74	3.4	0.004	0.74	0.0	0.05	16.29	0.01	2.329	8.06	3.01	7.9	92.0	0.1	-1.48	0.82	0.60	0.69	1.60	14142	1822	10	0	2	0	0	logfile
✔	8Wo7	37681	2024-08-03	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.58	0.0	0.04	15.18	0.00	2.488	7.20	1.63	3.3	96.5	0.2	1.86	0.37	0.62	0.87	2.36	8118	1080	4	0	4	0	0	logfile
✔	8QQU	18605	2024-08-04	2023-10-06	2.9	3.10	2.97	3.1	0.004	0.67	0.0	0.05	13.97	0.00	2.111	1.46	0.00	3.5	96.5	0.0	0.03	0.64	0.86	3.91	3.1	0.003	0.58	0.0	0.04	17.98	0.00	2.453	5.29	2.15	2.7	97.3	0.0	1.12	1.09	0.66	0.88	3.25	10715	1273	4	32	0	0	0	logfile
✔	8WMM	37656	2024-08-10	2023-10-04	2.98	2.33	2.99	2.9	0.003	0.56	0.0	0.04	17.96	0.00	2.219	5.71	0.52	5.0	95.0	0.0	0.00	0.69	0.71	2.12	2.9	0.005	0.69	0.0	0.04	19.27	0.00	2.363	9.05	1.00	4.7	95.2	0.1	-0.17	1.28	0.75	0.75	2.01	28632	2692	12	294	2	0	0	logfile
✔	8WMN	37657	2024-08-10	2023-10-04	2.82	2.30	2.85	1.7	0.003	0.66	1.0	0.04	18.45	0.00	2.068	10.08	0.84	5.0	95.0	0.0	-0.57	0.64	0.63	1.36	1.8	0.004	0.64	0.0	0.04	19.16	0.00	1.924	9.43	1.41	5.2	94.8	0.0	-0.11	0.57	0.70	0.69	1.43	28878	2692	10	306	2	0	0	logfile
✔	8WMQ	37658	2024-08-06	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.004	1.02	0.0	0.04	14.82	0.00	2.238	3.96	1.63	6.2	93.8	0.0	1.30	1.31	0.63	0.83	1.22	16348	1080	6	0	6	0	8208	logfile
✔	8WMC	37649	2024-08-06	2023-10-03	2.9	3.27	3.05	3.3	0.004	0.68	0.0	0.04	14.80	0.00	2.108	1.47	0.00	2.6	97.4	0.0	-0.05	0.70	0.83	3.00	3.3	0.003	0.55	0.0	0.04	17.03	0.00	2.358	3.07	1.85	2.9	97.1	0.0	0.39	0.40	0.69	0.85	2.73	16929	1983	4	38	4	0	0	logfile
✔	8WML	37655	2024-08-05	2023-10-03	2.86	3.12	3.00	3.1	0.005	0.86	0.0	0.06	16.12	0.01	2.070	2.65	0.00	4.4	95.6	0.0	-1.13	0.70	0.83	3.08	3.1	0.003	0.59	0.0	0.04	17.41	0.00	2.352	3.92	1.26	4.1	95.9	0.0	-0.38	0.49	0.72	0.85	2.69	13283	1543	4	38	4	0	0	logfile
✔	8WMH	37652	2024-08-05	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.59	0.0	0.04	20.27	0.00	2.512	7.27	1.81	4.5	95.5	0.0	-0.18	0.66	0.73	0.74	2.32	12942	1198	4	141	0	0	0	logfile
✔	8WMi	37653	2024-08-04	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.002	0.60	0.0	0.04	17.64	0.00	2.440	5.47	1.31	5.5	94.5	0.0	-0.86	0.45	0.75	0.79	2.04	10763	1237	3	39	4	0	0	logfile
✔	8WMD	37650	2024-08-09	2023-10-03	2.71	3.30	2.79	3.2	0.003	0.52	0.0	0.05	12.40	0.00	2.208	5.01	0.34	3.9	96.1	0.0	0.09	0.80	0.82	2.93	3.1	0.003	0.73	1.0	0.05	13.63	0.00	2.282	5.78	1.60	3.6	96.4	0.0	0.21	1.11	0.81	0.84	2.75	24429	3063	6	0	33	0	0	logfile
✔	8WM8	37645	2024-08-06	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.63	0.0	0.04	16.22	0.00	2.358	7.63	1.23	7.2	92.8	0.0	-1.95	0.39	0.56	0.73	1.52	16776	1055	5	0	1	0	8522	logfile
✔	8UF7	42185	2024-08-02	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.74	0.0	0.05	18.48	0.01	2.487	16.88	7.61	12.6	86.8	0.6	-2.27	0.30	0.68	0.67	1.43	3927	514	3	0	0	0	0	logfile
✔	8QPK	18555	2024-08-10	2023-10-02	4.2	3.88	4.04	3.5	0.002	0.49	0.0	0.14	17.28	0.00	2.209	9.47	0.07	3.2	96.8	0.0	0.95	0.69	0.73	—	3.5	0.003	0.55	0.0	0.04	16.98	0.00	2.023	9.67	0.00	5.5	94.5	0.0	0.52	1.21	0.70	0.74	—	29527	3974	17	207	1	0	0	logfile
✔	8WM4	37640	2024-08-04	2023-10-02	2.93	3.34	3.10	3.3	0.004	0.87	0.0	0.05	17.05	0.01	2.291	4.80	0.78	5.9	94.1	0.0	-2.05	0.71	0.73	1.32	3.3	0.003	0.67	0.0	0.04	17.88	0.00	2.379	8.21	2.60	6.5	93.5	0.0	-0.90	0.55	0.73	0.75	1.38	11530	1331	3	38	4	0	0	logfile
✔	8UEE	42161	2024-08-09	2023-10-01	3.2	3.40	3.22	3.5	0.005	0.63	0.0	0.05	14.50	0.00	1.893	6.69	0.43	2.7	97.3	0.0	0.29	0.64	0.81	2.25	3.5	0.004	0.62	0.0	0.04	16.08	0.00	1.902	5.24	2.12	3.1	96.9	0.0	0.82	0.40	0.63	0.82	1.81	25924	3285	19	0	21	1	0	logfile

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