Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UCD	42124	2024-08-03	2023-09-26	3.0	3.31	2.98	3.3	0.007	0.86	0.0	0.04	17.94	0.00	2.171	4.36	0.12	4.4	95.6	0.0	0.96	0.64	0.82	2.47	3.3	0.003	0.60	0.0	0.04	17.12	0.00	2.528	3.20	1.09	4.9	95.1	0.0	1.96	0.91	0.60	0.82	2.22	8058	939	8	0	9	1	0	logfile
✔	8UC7	42116	2024-08-06	2023-09-25	2.9	3.13	2.84	3.1	0.015	1.75	4.0	0.09	13.19	0.01	2.560	2.24	0.00	1.7	98.3	0.0	-0.57	0.61	0.79	6.07	3.1	0.003	0.55	0.0	0.04	15.32	0.00	2.629	5.80	1.04	1.6	98.4	0.0	2.09	0.55	0.73	0.86	4.70	14840	1936	8	0	16	0	0	logfile
✔	8UC8	42117	2024-08-05	2023-09-25	3.0	3.11	2.87	3.1	0.013	1.84	0.0	0.09	15.10	0.01	2.197	5.40	0.60	3.8	96.2	0.0	-1.40	0.59	0.71	5.06	3.1	0.003	0.56	0.0	0.04	15.41	0.00	2.620	9.57	1.19	1.7	98.3	0.0	1.62	1.21	0.73	0.82	3.76	14804	1936	8	0	16	0	0	logfile
✔	8UC1	42112	2024-08-04	2023-09-25	3.4	3.74	3.42	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.57	0.0	0.04	15.01	0.00	2.584	8.55	2.56	3.6	96.2	0.2	1.88	0.39	0.59	0.79	2.22	10310	1336	4	0	2	0	0	logfile
✔	8UBZ	42110	2024-08-03	2023-09-25	3.02	3.57	3.02	3.5	0.002	0.48	0.0	0.03	15.41	0.01	2.043	4.55	0.28	1.5	98.5	0.0	3.77	0.64	0.82	2.95	3.5	0.003	0.52	0.0	0.03	15.18	0.00	2.502	7.34	1.71	2.7	97.3	0.0	3.36	0.77	0.60	0.83	2.08	6674	415	2	0	4	26	3315	logfile
✔	8UBY	42109	2024-08-03	2023-09-25	2.67	3.13	2.68	3.0	0.002	0.47	0.0	0.03	14.53	0.01	2.118	4.08	0.56	1.7	98.3	0.0	3.72	0.67	0.88	4.26	3.0	0.003	0.49	0.0	0.03	14.83	0.00	2.573	3.64	1.13	1.9	98.1	0.0	3.96	0.89	0.60	0.86	3.25	6756	419	2	0	4	46	3345	logfile
✔	8QN7	18509	2024-08-02	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.004	0.57	0.0	0.05	18.37	0.00	2.686	3.54	0.00	6.7	93.3	0.0	-3.37	1.18	0.43	0.92	6.23	1455	190	5	0	0	0	0	logfile
✔	8UC3	42114	2024-08-02	2023-09-25	2.78	3.15	2.78	3.1	0.005	0.85	0.0	0.05	16.43	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.67	0.0	0.04	16.93	0.01	2.613	6.25	3.56	3.3	96.7	0.0	1.38	1.03	0.51	0.75	1.73	4304	556	6	0	2	0	0	logfile
✔	8UC0	42111	2024-08-03	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.003	0.52	0.0	0.03	13.78	0.00	2.451	1.88	1.12	2.6	97.4	0.0	3.48	0.91	0.63	0.88	3.66	6861	422	2	0	3	102	3375	logfile
✔	8Wi3	37556	2024-08-04	2023-09-24	3.38	3.85	3.53	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.003	0.57	0.0	0.04	17.57	0.00	2.525	4.22	2.40	6.5	93.3	0.2	1.56	0.36	0.64	0.74	0.58	9489	1208	1	0	0	0	0	logfile
✔	8Wi0	37554	2024-08-04	2023-09-24	2.93	3.14	2.95	3.2	0.004	0.64	0.0	0.04	16.33	0.01	2.162	9.87	0.28	2.6	97.2	0.2	1.00	0.68	0.82	2.70	3.1	0.003	0.58	0.0	0.04	16.85	0.00	2.406	7.38	2.73	2.7	97.3	0.0	1.66	0.47	0.68	0.84	2.42	9716	1239	2	0	0	0	0	logfile
✔	8Wi5	37558	2024-08-04	2023-09-24	3.46	3.75	3.44	3.7	0.002	0.47	0.0	0.04	16.84	0.01	2.198	6.30	0.47	2.3	97.7	0.0	2.62	0.54	0.62	0.66	3.7	0.003	0.57	0.0	0.04	17.14	0.00	2.414	5.54	1.69	2.8	97.2	0.0	1.85	0.56	0.63	0.76	1.51	9735	1242	2	0	0	0	0	logfile
✔	8Wi2	37555	2024-08-04	2023-09-24	4.06	4.53	4.17	4.3	0.003	0.66	0.0	0.04	17.70	0.00	2.106	11.61	0.67	3.1	96.9	0.0	2.17	0.67	0.79	—	4.3	0.003	0.63	0.0	0.04	14.40	0.00	2.485	9.69	0.00	3.3	96.7	0.0	1.93	1.35	0.69	0.78	—	9537	1214	2	0	0	0	0	logfile
✔	8Wi4	37557	2024-08-04	2023-09-24	3.2	3.46	3.23	3.4	0.003	0.57	0.0	0.04	18.33	0.00	2.276	8.11	0.39	5.2	94.3	0.5	1.03	0.65	0.77	0.76	3.4	0.003	0.59	0.0	0.04	18.38	0.00	2.456	8.95	3.29	4.8	94.7	0.4	0.73	0.45	0.67	0.83	1.61	9443	1207	1	0	0	0	0	logfile
✔	8UBR	42101	2024-08-04	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.50	0.0	0.04	17.87	0.00	2.022	3.23	1.58	1.8	98.2	0.0	2.57	0.81	0.60	0.84	2.42	9440	1156	2	0	9	4	0	logfile
✔	8WHW	37550	2024-08-09	2023-09-23	3.85	4.18	3.91	4.0	0.006	0.95	2.0	0.07	21.28	0.01	2.128	17.23	1.91	8.8	90.6	0.6	-2.00	0.82	0.80	1.24	4.0	0.003	0.70	0.0	0.05	16.31	0.00	2.435	11.81	3.17	6.7	93.2	0.0	-1.29	1.14	0.82	0.82	1.01	25807	3189	23	0	65	0	0	logfile
✔	8WHV	37549	2024-08-09	2023-09-23	3.32	3.72	3.55	3.7	0.005	0.92	0.0	0.06	20.85	0.01	1.979	16.13	1.19	8.1	91.7	0.2	-2.10	0.75	0.81	2.53	3.7	0.003	0.69	0.0	0.05	15.85	0.00	2.456	8.88	3.46	6.6	93.4	0.1	-1.22	1.12	0.75	0.81	2.18	25818	3189	24	0	66	0	0	logfile
✔	8WHZ	37553	2024-08-03	2023-09-23	3.93	4.21	3.90	4.2	0.004	0.79	0.0	0.05	14.48	0.01	1.873	15.50	0.29	4.1	95.8	0.1	-0.54	0.71	0.72	1.73	4.1	0.005	1.05	1.0	0.05	16.76	0.00	2.035	13.45	3.31	3.9	95.9	0.1	0.21	2.61	0.74	0.78	0.75	6515	791	4	0	8	0	0	logfile
✔	8WHA	37537	2024-08-07	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.70	0.0	0.04	23.75	0.00	2.333	9.72	0.07	5.7	94.2	0.1	0.43	1.44	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8WGX	37520	2024-08-03	2023-09-22	3.47	3.84	3.53	3.8	0.003	0.54	0.0	0.04	16.22	0.00	2.283	4.10	0.22	3.3	96.7	0.0	1.83	0.56	0.74	1.75	3.8	0.003	0.52	0.0	0.04	16.33	0.00	2.167	3.76	2.17	3.1	96.9	0.0	1.64	0.44	0.56	0.77	2.08	8760	547	2	0	2	0	4363	logfile

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