Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WH8	37533	2024-08-05	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.003	0.64	0.0	0.03	25.58	0.00	2.343	9.10	1.64	4.4	95.5	0.1	1.61	0.97	0.84	0.83	0.79	14304	1149	12	250	1	0	0	logfile
✔	8WGX	37520	2024-08-03	2023-09-22	3.47	3.84	3.53	3.8	0.003	0.54	0.0	0.04	16.22	0.00	2.283	4.10	0.22	3.3	96.7	0.0	1.83	0.56	0.74	1.75	3.8	0.003	0.52	0.0	0.04	16.33	0.00	2.167	3.76	2.17	3.1	96.9	0.0	1.64	0.44	0.56	0.77	2.08	8760	547	2	0	2	0	4363	logfile
✔	8WGW	37517	2024-08-03	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.59	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.003	0.57	0.0	0.04	16.81	0.00	2.581	6.08	1.87	4.3	95.7	0.0	0.10	0.99	0.62	0.78	2.86	6564	794	5	0	9	0	0	logfile
✔	8WH5	37529	2024-08-05	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.004	0.64	0.0	0.03	25.85	0.00	2.506	7.99	2.24	4.4	95.3	0.3	1.27	1.01	0.88	0.85	1.05	14663	1156	11	266	0	0	0	logfile
✔	8WHA	37537	2024-08-07	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.70	0.0	0.04	23.75	0.00	2.333	9.72	0.07	5.7	94.2	0.1	0.43	1.44	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8WG8	37505	2024-08-03	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.004	0.69	0.0	0.04	15.83	0.00	2.464	6.15	2.60	3.9	96.1	0.0	0.78	0.50	0.63	0.80	2.53	8043	1037	6	0	0	0	0	logfile
✔	8WG5	37503	2024-08-05	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.005	0.70	0.0	0.04	26.95	0.00	2.079	10.80	2.42	2.5	97.5	0.0	1.47	1.58	0.91	0.87	1.21	14965	1135	12	294	0	0	0	logfile
✔	8WG7	37504	2024-08-03	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.006	1.04	2.0	0.06	16.07	0.01	2.229	7.88	1.74	3.6	96.4	0.0	1.59	0.44	0.65	0.78	2.24	8123	1030	5	0	0	0	0	logfile
✔	8WFX	37499	2024-08-09	2023-09-20	3.73	3.90	3.64	3.7	0.007	1.08	0.0	0.06	17.48	0.01	2.221	11.70	0.79	10.3	89.6	0.1	-5.44	0.78	0.71	1.14	3.7	0.008	0.90	0.0	0.05	18.58	0.01	2.386	20.23	4.10	12.6	87.4	0.0	-3.69	0.54	0.79	0.73	0.90	27176	3319	15	50	0	0	0	logfile
✔	8QLo	18486	2024-08-03	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.004	0.67	0.0	0.04	16.63	0.00	2.412	8.25	3.18	2.6	97.4	0.0	0.49	0.88	0.77	0.80	2.82	7282	892	2	0	0	0	0	logfile
✔	8WFL	37495	2024-08-02	2023-09-19	3.03	3.10	3.19	3.5	0.009	0.81	0.0	0.07	17.69	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.2	0.003	0.61	0.0	0.04	18.14	0.00	2.572	8.54	5.78	5.8	94.2	0.0	0.33	0.33	0.53	0.79	1.89	4414	552	2	0	1	0	0	logfile
✔	8WFi	37492	2024-08-02	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.55	0.0	0.04	15.08	0.00	2.213	2.33	1.32	2.8	97.2	0.0	2.08	0.89	0.65	0.84	3.32	4347	543	3	0	3	37	0	logfile
✔	8WFK	37494	2024-08-02	2023-09-19	3.22	3.53	3.37	3.6	0.004	0.62	0.0	0.04	16.76	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.61	0.0	0.04	16.78	0.00	2.338	4.14	2.60	5.4	94.6	0.0	-0.35	0.39	0.59	0.87	2.05	4371	546	2	0	4	0	0	logfile
✔	8U8Y	42029	2024-08-08	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.75	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	2.3	0.002	0.47	0.0	0.04	17.06	0.00	2.512	3.37	0.56	2.7	97.3	0.0	1.39	1.21	0.71	0.85	5.20	22616	2936	16	0	16	0	0	logfile
✔	8WEJ	37477	2024-08-04	2023-09-18	2.79	2.58	2.84	3.0	0.007	0.91	0.0	0.05	14.70	0.01	1.991	3.56	2.33	3.6	96.4	0.0	-0.11	0.72	0.78	4.06	3.0	0.003	0.65	0.0	0.04	16.47	0.00	1.967	10.46	1.68	3.3	96.7	0.0	0.24	1.16	0.70	0.79	3.43	10659	1336	11	0	12	1	0	logfile
✔	8U8o	42026	2024-08-10	2023-09-18	2.4	2.72	2.39	2.3	0.006	0.78	0.0	0.05	18.03	0.00	2.256	3.62	1.24	3.4	96.6	0.0	0.12	0.82	0.79	4.19	2.3	0.005	0.74	0.0	0.04	16.89	0.01	2.309	4.47	1.59	3.3	96.7	0.0	0.93	1.39	0.88	0.91	3.50	30080	3856	16	0	32	0	0	logfile
✔	8U8F	42023	2024-08-05	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.55	0.0	0.04	16.16	0.00	2.336	5.81	2.28	3.4	96.6	0.0	0.77	1.78	0.60	0.74	1.68	13891	889	5	0	1	0	6925	logfile
✔	8WE4	37471	2024-08-05	2023-09-17	2.91	2.35	2.96	2.1	0.004	0.70	0.0	0.05	13.30	0.01	1.872	7.79	0.45	5.9	93.6	0.5	-0.51	0.76	0.76	3.54	2.1	0.003	0.66	0.0	0.04	15.98	0.00	1.965	7.11	1.70	6.4	93.4	0.2	-0.58	0.94	0.79	0.79	2.64	8281	1017	8	0	11	0	0	logfile
✔	8WE7	37473	2024-08-08	2023-09-17	3.2	3.60	3.49	3.6	0.004	0.75	1.0	0.04	18.92	0.01	2.198	12.87	0.74	9.9	89.1	1.0	-2.42	0.53	0.76	2.05	3.6	0.006	0.76	0.0	0.05	17.93	0.00	2.180	9.48	3.50	10.2	89.3	0.5	-1.76	0.41	0.58	0.81	1.76	21014	2583	11	0	20	0	0	logfile
✔	8WDZ	37468	2024-08-04	2023-09-16	2.71	2.24	2.74	2.0	0.004	0.59	0.0	0.04	13.56	0.00	2.004	5.55	0.43	3.7	96.3	0.0	0.07	0.78	0.79	3.27	2.0	0.002	0.55	0.0	0.04	15.73	0.00	2.180	3.52	1.30	2.3	97.6	0.1	0.47	0.92	0.82	0.83	2.64	6559	791	6	0	11	0	0	logfile

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