Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U4i	41883	2024-08-07	2023-09-10	3.38	3.92	3.46	3.8	0.014	1.56	0.0	0.09	16.96	0.01	2.351	0.62	0.35	2.0	98.0	0.0	-0.39	0.80	0.79	3.08	3.8	0.003	0.60	0.0	0.04	12.21	0.00	2.369	3.66	0.78	5.4	94.6	0.0	-1.23	1.21	0.75	0.75	2.52	20434	1301	20	0	57	0	9593	logfile
✔	8WBX	37426	2024-08-03	2023-09-10	3.23	3.53	3.23	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.305	10.08	0.38	1.6	98.4	0.0	1.77	0.48	0.63	1.04	3.5	0.003	0.64	0.0	0.04	16.17	0.00	2.566	10.96	4.41	2.9	97.1	0.0	1.43	0.57	0.49	0.66	1.19	7331	934	3	0	1	0	0	logfile
✔	8U4C	41878	2024-08-06	2023-09-10	3.6	4.15	3.69	3.7	0.003	0.61	0.0	0.04	17.06	0.00	1.722	13.82	0.00	6.8	93.0	0.2	-1.32	0.87	0.82	2.06	3.7	0.003	0.63	0.0	0.04	17.11	0.00	2.486	10.50	3.21	6.3	93.4	0.2	-1.50	1.15	0.87	0.83	1.92	14706	1826	6	0	0	0	0	logfile
✔	8U4B	41877	2024-08-08	2023-09-10	3.9	4.27	3.89	4.0	0.003	0.59	0.0	0.04	16.02	0.00	2.146	10.97	0.07	7.0	92.9	0.1	-0.95	0.87	0.82	2.05	4.0	0.003	0.61	0.0	0.04	16.33	0.00	2.601	7.17	1.01	5.6	94.3	0.1	-0.63	0.34	0.88	0.83	1.87	13212	1634	2	0	0	0	0	logfile
✔	8U4J	41884	2024-08-07	2023-09-10	3.7	4.14	3.77	4.0	0.014	1.54	3.0	0.09	16.95	0.01	2.219	0.90	0.17	2.3	97.7	0.0	-0.45	0.82	0.79	2.05	4.0	0.004	0.64	0.0	0.04	12.51	0.00	2.308	5.04	1.31	5.4	94.6	0.0	-1.33	1.50	0.82	0.78	2.29	20432	1297	20	0	58	0	9582	logfile
✔	8U4E	41880	2024-08-06	2023-09-10	4.2	4.74	4.27	3.9	0.003	0.65	0.0	0.05	13.41	0.00	1.274	21.10	0.00	9.6	90.3	0.2	-1.68	0.87	0.83	—	4.0	0.003	0.64	0.0	0.05	13.73	0.00	2.454	12.70	0.06	8.2	91.6	0.2	-1.67	0.39	0.87	0.83	—	13948	1729	5	0	0	0	0	logfile
✔	8QHS	18416	2024-08-02	2023-09-10	2.3	2.47	2.33	2.4	0.006	0.68	0.0	0.05	17.61	0.00	2.089	5.84	6.56	1.3	98.7	0.0	-0.18	0.40	0.89	6.91	2.4	0.004	0.51	0.0	0.04	17.31	0.00	2.435	5.07	1.15	1.3	98.7	0.0	1.20	0.37	0.40	0.90	6.54	6212	785	10	0	0	337	0	logfile
✔	8WBE	37422	2024-08-06	2023-09-09	3.0	3.25	3.12	3.3	0.002	0.54	0.0	0.04	13.42	0.00	2.196	5.31	0.23	5.0	94.9	0.0	-1.78	0.61	0.84	3.17	3.3	0.005	0.65	0.0	0.04	16.89	0.00	2.518	4.08	2.97	6.5	93.4	0.0	-1.48	0.50	0.61	0.85	3.09	16094	2040	6	0	0	0	0	logfile
✔	8WBG	37424	2024-08-04	2023-09-09	3.2	3.51	3.33	3.6	0.003	0.58	0.0	0.04	13.02	0.00	2.197	6.61	0.17	5.0	94.9	0.1	-1.10	0.64	0.77	3.06	3.6	0.006	0.74	0.0	0.05	15.93	0.00	2.359	6.56	2.94	7.9	92.0	0.1	-1.61	0.98	0.64	0.79	2.77	10854	1357	4	0	0	0	0	logfile
✔	8WBA	37418	2024-08-03	2023-09-09	3.1	3.27	3.07	3.3	0.002	0.54	0.0	0.04	16.65	0.00	2.289	9.38	0.32	1.6	98.4	0.0	1.56	0.62	0.79	2.30	3.3	0.003	0.57	0.0	0.04	16.96	0.00	2.559	9.10	3.85	2.1	97.9	0.0	1.54	0.25	0.61	0.80	2.44	8646	1106	3	0	2	0	0	logfile
✔	8WBC	37420	2024-08-04	2023-09-09	3.03	3.32	3.19	3.3	0.003	0.51	0.0	0.04	12.97	0.00	2.129	5.70	0.26	5.0	94.9	0.1	-1.39	0.64	0.85	3.17	3.3	0.003	0.52	0.0	0.04	15.85	0.00	2.536	3.91	1.83	4.6	95.4	0.0	-1.16	0.92	0.61	0.85	2.71	10549	1339	4	0	0	0	0	logfile
✔	8WBH	37425	2024-08-04	2023-09-09	3.2	3.43	3.24	3.4	0.003	0.54	0.0	0.04	11.71	0.00	2.203	6.68	0.00	6.0	93.8	0.2	-1.76	0.73	0.83	2.55	3.4	0.005	0.69	0.0	0.05	15.64	0.00	2.477	6.13	3.62	7.7	92.2	0.2	-1.60	0.74	0.75	0.85	2.35	10284	1293	4	0	0	0	0	logfile
✔	8WBB	37419	2024-08-02	2023-09-09	2.9	3.16	2.98	3.2	0.004	0.62	0.0	0.04	19.18	0.00	2.213	8.88	0.51	5.6	94.3	0.1	-1.79	0.66	0.87	2.29	3.2	0.006	0.70	0.0	0.05	19.50	0.00	2.520	4.21	4.05	6.9	93.1	0.0	-1.52	0.35	0.67	0.89	2.54	5449	689	2	0	0	0	0	logfile
✔	8WBD	37421	2024-08-06	2023-09-09	2.9	3.17	3.02	3.2	0.003	0.57	0.0	0.04	13.55	0.00	2.195	5.10	0.23	5.4	94.6	0.0	-1.64	0.63	0.85	3.35	3.2	0.003	0.59	0.0	0.04	16.78	0.00	2.367	3.96	2.12	5.5	94.5	0.0	-1.26	0.41	0.64	0.87	3.12	16157	2040	7	0	1	0	0	logfile
✔	8U44	41874	2024-08-09	2023-09-08	3.41	3.89	3.61	3.7	0.006	1.01	0.0	0.06	14.79	0.01	2.169	2.57	0.00	5.7	94.3	0.0	-2.70	0.79	0.74	0.97	3.7	0.005	0.76	0.0	0.05	16.43	0.00	2.457	15.87	2.32	7.4	92.6	0.0	-1.75	0.72	0.81	0.79	0.87	17028	2169	15	0	9	0	0	logfile
✔	8QHP	18415	2024-08-03	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.003	0.50	0.0	0.04	14.96	0.00	2.377	5.65	1.12	1.1	98.9	0.0	2.41	0.85	0.74	0.84	3.48	6788	820	4	0	2	0	0	logfile
✔	8U3Y	41867	2024-08-05	2023-09-08	3.1	3.43	3.22	3.4	0.006	0.72	0.0	0.04	18.58	0.00	1.963	6.85	0.25	3.5	96.5	0.0	-0.24	0.79	0.87	4.03	3.4	0.003	0.54	0.0	0.04	18.88	0.00	1.979	6.32	0.25	3.2	96.8	0.0	0.69	0.33	0.76	0.87	3.02	14012	1336	10	144	5	5	0	logfile
✔	8U3E	41859	2024-08-02	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.78	0.01	2.625	3.73	1.14	3.5	96.5	0.0	1.21	0.40	0.51	0.85	3.12	3338	427	1	0	0	0	0	logfile
✔	8U3F	41860	2024-08-02	2023-09-07	3.31	3.63	3.18	3.6	0.005	0.62	0.0	0.04	12.99	0.01	2.265	6.58	0.00	2.1	97.9	0.0	-1.54	0.57	0.87	2.88	3.6	0.004	0.59	0.0	0.04	14.61	0.00	2.565	6.72	2.49	2.6	97.4	0.0	1.86	0.35	0.56	0.87	2.35	3410	437	1	0	0	0	0	logfile
✔	8WA5	37391	2024-08-07	2023-09-07	2.51	2.71	2.50	2.7	0.004	1.10	0.0	0.04	16.21	0.01	1.926	4.94	0.85	2.3	97.7	0.0	1.17	0.66	0.84	3.96	2.7	0.003	0.80	0.0	0.04	16.64	0.00	1.948	4.84	2.45	2.7	97.3	0.0	1.35	1.22	0.69	0.88	3.94	9929	1249	5	0	12	6	0	logfile

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