Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U3E	41859	2024-08-02	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.78	0.01	2.625	3.73	1.14	3.5	96.5	0.0	1.21	0.40	0.51	0.85	3.12	3338	427	1	0	0	0	0	logfile
✔	8U3D	41858	2024-08-02	2023-09-07	2.83	3.27	2.77	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.60	0.0	0.04	14.59	0.01	2.555	5.07	1.99	3.3	96.7	0.0	1.58	0.91	0.52	0.86	3.08	3338	427	1	0	0	0	0	logfile
✔	8U3F	41860	2024-08-02	2023-09-07	3.31	3.63	3.18	3.6	0.005	0.62	0.0	0.04	12.99	0.01	2.265	6.58	0.00	2.1	97.9	0.0	-1.54	0.57	0.87	2.88	3.6	0.004	0.59	0.0	0.04	14.61	0.00	2.565	6.72	2.49	2.6	97.4	0.0	1.86	0.35	0.56	0.87	2.35	3410	437	1	0	0	0	0	logfile
✔	8U3K	41865	2024-08-09	2023-09-07	2.5	2.95	2.58	1.9	0.008	0.83	0.0	0.05	17.43	0.00	2.016	5.18	1.60	3.1	96.7	0.1	0.09	0.89	0.86	3.63	2.1	0.003	0.58	0.0	0.04	17.91	0.00	2.041	5.58	1.53	2.9	96.9	0.1	1.49	0.39	0.90	0.88	3.21	24990	2952	7	55	1	0	0	logfile
✔	8WA3	37390	2024-08-03	2023-09-06	2.86	3.76	2.88	3.5	0.003	0.65	0.0	0.04	14.06	0.00	2.090	9.53	1.03	5.1	94.9	0.0	0.71	0.65	0.80	1.97	3.5	0.003	0.73	0.0	0.05	16.59	0.00	2.405	8.55	1.71	5.1	94.9	0.0	0.62	1.62	0.63	0.79	2.00	8163	1031	5	0	0	0	0	logfile
✔	8W9Y	37385	2024-08-05	2023-09-06	3.5	3.75	3.53	3.8	0.004	0.76	1.0	0.04	15.90	0.01	2.097	9.48	0.48	10.7	89.3	0.0	-0.43	0.58	0.75	1.32	3.7	0.003	0.64	0.0	0.04	16.82	0.00	2.482	5.74	4.01	10.3	89.7	0.0	0.31	0.58	0.59	0.78	1.28	13152	1584	6	0	0	0	0	logfile
✔	8QGY	18396	2024-08-10	2023-09-06	3.71	3.99	3.79	3.8	0.003	0.62	1.0	0.06	11.94	0.00	2.061	4.68	3.91	6.2	93.8	0.1	0.12	0.75	0.64	0.79	3.8	0.003	0.59	0.0	0.06	14.40	0.00	2.159	9.12	2.92	7.3	92.6	0.1	0.00	0.81	0.77	0.68	0.52	25443	1589	2	0	0	0	12699	logfile
✔	8W9o	37377	2024-08-03	2023-09-05	2.8	2.67	2.80	2.8	0.005	0.54	0.0	0.04	15.90	0.00	2.217	8.65	2.31	4.0	96.0	0.0	0.95	0.59	0.82	3.45	2.8	0.003	0.53	0.0	0.04	16.09	0.00	2.484	7.64	2.31	3.3	96.7	0.0	1.94	0.36	0.58	0.81	2.69	6862	854	4	0	4	0	0	logfile
✔	8W9C	37364	2024-08-06	2023-09-05	3.3	3.57	3.36	3.6	0.005	0.79	3.0	0.06	18.16	0.01	1.965	14.24	7.42	6.1	93.6	0.2	-3.11	0.65	0.69	1.91	3.6	0.003	0.68	0.0	0.04	18.26	0.00	1.983	9.82	2.75	5.6	94.4	0.0	0.26	0.70	0.64	0.71	1.78	15278	1868	9	0	9	0	0	logfile
✔	8W9N	37376	2024-08-03	2023-09-05	2.7	2.62	2.70	2.8	0.004	0.59	0.0	0.04	14.68	0.00	2.189	8.29	0.64	3.4	96.4	0.1	1.27	0.63	0.86	3.23	2.8	0.003	0.52	0.0	0.04	15.42	0.00	2.525	6.42	1.80	2.9	97.0	0.1	2.71	0.98	0.63	0.85	2.50	6860	854	4	0	2	0	0	logfile
✔	8U2C	41845	2024-08-05	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.73	0.0	0.04	16.40	0.00	2.398	6.68	3.17	3.1	96.8	0.1	0.78	0.69	0.75	0.83	2.46	15042	1948	10	0	0	0	0	logfile
✔	8W9F	37367	2024-08-09	2023-09-05	4.4	3.67	4.27	3.5	0.012	0.98	24.0	0.06	24.10	0.01	1.158	15.94	7.51	4.6	94.9	0.5	-2.06	0.62	0.41	—	3.4	0.010	0.67	0.0	0.04	22.48	0.00	1.952	11.95	0.00	4.8	95.1	0.0	0.57	2.74	0.75	0.69	—	27868	2696	20	294	7	0	0	logfile
✔	8W9T	37381	2024-08-03	2023-09-05	2.6	2.34	2.82	2.7	0.005	0.60	0.0	0.04	12.30	0.00	2.090	8.43	0.00	1.7	98.1	0.2	-1.88	0.54	0.80	3.36	2.7	0.002	0.51	0.0	0.04	14.73	0.00	2.625	6.27	1.60	2.6	97.4	0.0	2.72	1.02	0.53	0.80	3.36	6574	852	6	0	2	4	0	logfile
✔	8QGT	18390	2024-08-04	2023-09-05	2.8	2.87	2.76	2.8	0.004	0.56	0.0	0.04	16.98	0.00	2.214	7.89	0.88	3.1	96.9	0.0	0.98	0.78	0.83	2.93	2.8	0.003	0.55	0.0	0.04	17.68	0.00	2.394	5.96	2.11	3.0	97.0	0.0	1.24	0.81	0.79	0.88	3.45	10635	1289	2	12	0	0	0	logfile
✔	8U29	41842	2024-08-09	2023-09-05	2.8	3.01	2.84	3.1	0.020	1.41	6.0	0.12	12.49	0.01	2.492	1.63	1.13	4.4	95.4	0.2	0.02	0.74	0.79	4.58	3.0	0.003	0.63	0.0	0.05	13.55	0.00	2.427	2.99	1.13	2.1	97.9	0.0	0.29	1.81	0.75	0.85	4.13	25726	3246	36	0	111	0	0	logfile
✔	8U2B	41844	2024-08-04	2023-09-05	0.86	3.74	2.85	3.4	0.011	1.83	0.0	0.08	9.63	0.01	2.506	0.50	0.00	2.4	97.6	0.0	0.09	0.80	0.85	5.79	3.4	0.003	0.58	0.0	0.03	13.70	0.00	2.598	10.04	2.79	2.0	98.0	0.0	4.66	1.04	0.83	0.93	3.07	11396	1665	37	0	0	0	0	logfile
✔	8QG0	18386	2024-08-03	2023-09-05	3.43	3.78	3.53	3.8	0.004	0.73	2.0	0.05	17.66	0.00	2.198	21.24	0.50	6.4	93.6	0.0	-1.84	0.65	0.68	1.62	3.8	0.005	0.73	0.0	0.05	19.42	0.00	2.491	17.36	2.99	5.2	94.8	0.0	-1.61	0.43	0.64	0.69	1.16	6080	656	4	34	0	0	0	logfile
✔	8W9V	37382	2024-08-03	2023-09-05	2.9	2.87	2.95	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.231	5.07	0.93	1.8	98.2	0.0	1.62	0.61	0.85	3.43	3.0	0.002	0.47	0.0	0.04	14.59	0.00	2.605	5.15	2.27	1.2	98.8	0.0	2.80	0.25	0.57	0.83	3.16	6574	852	4	0	6	0	0	logfile
✔	8W9B	37363	2024-08-04	2023-09-05	3.0	3.09	2.88	3.1	0.004	0.76	0.0	0.05	10.61	0.00	2.078	21.63	0.35	6.8	93.2	0.1	-5.57	0.66	0.76	3.50	3.1	0.004	0.72	0.0	0.05	16.78	0.00	2.407	7.34	2.46	6.6	93.3	0.1	-2.03	1.04	0.68	0.80	2.68	10245	1242	3	0	1	0	0	logfile
✔	8W8S	37358	2024-08-02	2023-09-04	3.3	4.07	2.88	3.9	0.007	0.89	0.0	0.05	16.08	0.01	2.310	8.96	1.64	4.0	96.0	0.0	1.56	0.57	0.81	1.74	3.9	0.004	0.61	0.0	0.04	16.47	0.00	2.486	3.93	0.82	3.2	96.8	0.0	2.56	0.29	0.58	0.82	1.31	2265	281	2	0	2	0	0	logfile

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