Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U1X	41837	2024-08-04	2023-09-04	2.7	3.42	2.79	3.2	0.006	0.82	0.0	0.05	13.61	0.01	1.988	3.48	0.00	3.1	96.9	0.1	-5.72	0.78	0.85	3.50	3.2	0.003	0.63	0.0	0.04	15.25	0.00	2.040	4.88	1.06	2.5	97.5	0.0	0.74	1.15	0.76	0.84	2.63	11040	1375	4	0	2	0	0	logfile
✔	8W8R	37357	2024-08-03	2023-09-04	3.3	3.13	3.14	3.2	0.006	0.85	0.0	0.06	16.67	0.00	2.227	7.59	1.64	5.2	94.8	0.0	-0.20	0.68	0.85	2.57	3.2	0.003	0.57	0.0	0.04	17.03	0.00	2.514	3.46	3.59	4.3	95.7	0.0	0.39	0.27	0.65	0.85	2.39	9018	1142	6	0	2	0	0	logfile
✔	8W8Q	37356	2024-08-03	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	2.9	0.003	0.57	0.0	0.04	16.42	0.00	2.470	6.15	3.30	2.0	98.0	0.0	1.36	1.11	0.71	0.85	3.42	8168	1044	5	0	0	0	0	logfile
✔	8U1U	41829	2024-08-04	2023-09-02	3.1	3.41	—	3.3	0.004	0.71	0.0	0.05	13.15	0.01	2.003	6.13	0.00	3.5	96.5	0.0	0.26	0.72	0.82	3.41	3.3	0.004	0.67	0.0	0.04	15.20	0.00	2.379	7.55	1.43	3.5	96.5	0.0	0.20	0.46	0.72	0.85	2.64	9507	1206	6	0	1	0	0	logfile
✔	8U1S	41826	2024-08-06	2023-09-02	3.21	3.93	3.31	3.8	0.023	1.95	9.0	0.10	10.17	0.01	1.314	5.29	0.79	6.0	93.3	0.6	-0.28	0.73	0.76	2.59	3.8	0.004	0.84	0.0	0.05	15.46	0.01	2.521	13.23	3.74	7.1	92.6	0.3	-1.56	1.11	0.67	0.75	2.34	17465	2241	16	0	4	0	0	logfile
✔	8W87	37347	2024-08-03	2023-09-01	2.8	3.17	2.93	3.2	0.003	0.56	0.0	0.04	15.67	0.01	2.193	3.86	0.45	1.9	98.1	0.0	1.49	0.60	0.86	3.88	3.2	0.003	0.55	0.0	0.04	16.39	0.00	2.493	4.53	2.36	2.3	97.7	0.0	1.56	0.35	0.51	0.81	3.44	8228	1045	6	0	1	0	0	logfile
✔	8W8B	37351	2024-08-03	2023-09-01	3.0	3.35	3.12	3.3	0.005	0.58	0.0	0.04	14.50	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.003	0.55	0.0	0.04	15.13	0.00	2.457	4.40	1.40	2.6	97.4	0.0	1.40	0.32	0.63	0.86	3.21	8734	1096	6	0	7	0	0	logfile
✔	8W89	37349	2024-08-03	2023-09-01	3.0	3.35	3.11	3.3	0.006	0.83	0.0	0.06	13.33	0.00	2.334	4.90	0.90	3.4	96.6	0.0	0.85	0.63	0.81	2.98	3.3	0.003	0.60	0.0	0.04	15.75	0.00	2.484	6.31	1.46	2.0	98.0	0.0	1.02	1.27	0.62	0.82	2.54	8230	1043	6	0	1	1	0	logfile
✔	8U1Q	41824	2024-08-07	2023-09-01	3.36	3.66	3.33	3.6	0.021	1.93	4.0	0.11	10.36	0.01	2.182	1.42	0.00	4.1	95.0	0.8	-0.75	0.78	0.81	3.32	3.6	0.005	0.88	0.0	0.05	14.72	0.00	2.447	11.02	2.05	8.5	91.3	0.2	-2.22	0.70	0.77	0.83	2.57	19016	2448	16	0	8	0	0	logfile
✔	8U1o	41819	2024-08-06	2023-09-01	3.4	2.61	3.67	3.4	0.005	1.00	0.0	0.06	16.71	0.01	2.225	12.44	0.92	7.7	92.0	0.4	-2.51	0.56	0.72	1.67	3.4	0.004	0.81	0.0	0.05	17.09	0.00	2.404	17.76	3.92	7.9	91.9	0.3	-2.42	0.50	0.56	0.74	1.65	15096	1989	3	0	0	0	0	logfile
✔	8U1L	41816	2024-08-05	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	2.9	0.005	0.75	0.0	0.04	16.02	0.00	1.910	19.02	2.52	3.8	96.2	0.0	-0.07	0.57	0.93	0.81	0.19	12595	1543	6	0	4	0	0	logfile
✔	8U1N	41818	2024-08-03	2023-09-01	3.9	4.61	3.85	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.003	0.65	0.0	0.04	18.35	0.00	1.800	13.35	2.79	3.8	96.2	0.0	-1.08	0.99	0.91	0.79	1.43	8164	994	4	0	4	0	0	logfile
✔	8U1R	41825	2024-08-03	2023-09-01	3.6	3.81	3.64	3.8	0.005	0.77	0.0	0.05	15.16	0.00	2.182	5.32	1.05	3.3	96.7	0.0	-0.29	0.77	0.84	2.91	3.8	0.003	0.60	0.0	0.04	15.97	0.00	2.569	6.02	2.10	3.9	96.1	0.0	0.65	1.01	0.78	0.84	2.58	9126	1197	3	0	0	0	0	logfile
✔	8QEo	18374	2024-08-07	2023-09-01	3.26	2.53	3.32	3.1	0.004	0.53	0.0	0.04	11.10	0.00	2.018	6.28	2.65	8.6	91.3	0.1	-1.38	0.75	0.71	2.54	3.1	0.004	0.69	0.0	0.05	14.91	0.00	2.110	10.71	2.75	7.8	92.1	0.1	-1.03	0.74	0.78	0.76	1.94	18126	2267	3	0	1	0	0	logfile
✔	8W88	37348	2024-08-03	2023-09-01	2.6	2.99	2.75	2.9	0.006	0.64	0.0	0.04	14.72	0.01	2.143	4.00	0.34	2.7	97.3	0.0	1.00	0.71	0.87	4.27	3.0	0.003	0.55	0.0	0.04	15.70	0.00	2.413	4.50	2.80	2.2	97.8	0.0	1.41	0.49	0.60	0.85	3.37	8307	1039	6	0	4	0	0	logfile
✔	8QEN	18373	2024-08-07	2023-09-01	3.4	2.69	3.47	3.3	0.003	0.54	0.0	0.04	10.63	0.00	2.118	7.73	2.20	5.0	94.9	0.1	0.22	0.75	0.75	2.14	3.3	0.004	0.62	0.0	0.05	15.06	0.00	2.507	9.26	2.39	5.9	93.9	0.2	0.01	2.69	0.77	0.80	1.81	19007	2363	2	0	1	0	0	logfile
✔	8W8D	37342	2024-08-08	2023-09-01	2.8	4.08	2.82	3.3	0.007	1.11	24.0	0.07	19.92	0.00	1.262	11.21	7.73	4.7	95.3	0.0	-0.87	0.78	0.70	1.30	3.4	0.003	0.79	0.0	0.04	18.35	0.00	2.434	6.52	1.94	3.8	96.2	0.0	0.44	0.71	0.92	0.88	1.09	23063	2921	19	0	0	29	0	logfile
✔	8QEY	18379	2024-08-03	2023-09-01	4.0	4.20	4.03	4.1	0.005	0.96	0.0	0.05	19.80	0.01	2.258	7.47	0.91	6.8	93.2	0.0	-1.09	0.64	0.76	—	4.1	0.003	0.74	0.0	0.04	17.91	0.00	2.507	9.26	5.35	5.8	94.2	0.0	0.59	0.39	0.65	0.77	—	7306	918	7	0	9	0	0	logfile
✔	8U1M	41817	2024-08-03	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.003	0.67	0.0	0.04	17.20	0.00	1.911	15.42	2.20	4.1	95.9	0.0	-1.02	0.48	0.93	0.74	0.73	7882	957	4	0	4	0	0	logfile
✔	8W8A	37350	2024-08-03	2023-09-01	2.8	3.15	2.86	3.1	0.005	0.71	1.0	0.05	12.99	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.003	0.55	0.0	0.04	15.78	0.00	2.522	5.99	2.13	2.6	97.4	0.0	1.19	0.38	0.62	0.85	3.49	8260	1045	6	0	1	1	0	logfile

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