Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KGK	37224	2024-08-03	2023-08-19	3.16	3.62	3.34	3.6	0.005	0.69	1.0	0.05	13.37	0.01	2.122	11.80	0.40	2.6	97.3	0.1	0.89	0.61	0.75	3.01	3.6	0.004	0.63	0.0	0.04	15.57	0.00	2.399	8.76	3.10	2.7	97.3	0.0	1.05	1.16	0.60	0.77	2.29	7476	1006	5	0	0	0	0	logfile
✔	8KGR	37231	2024-08-05	2023-08-19	3.2	3.30	3.21	3.2	0.008	0.95	0.0	0.06	15.37	0.01	1.983	3.98	0.07	4.6	95.4	0.0	-3.81	0.77	0.86	4.33	3.2	0.003	0.55	0.0	0.04	17.60	0.00	2.003	4.97	2.05	2.9	97.1	0.0	0.30	0.86	0.78	0.87	2.54	13960	1558	6	65	2	0	0	logfile
✔	8KGP	37229	2024-08-05	2023-08-19	3.3	3.40	3.26	3.4	0.011	1.05	0.0	0.07	11.20	0.01	2.314	5.05	0.76	5.9	94.1	0.0	-3.96	0.75	0.88	3.52	3.4	0.003	0.58	0.0	0.04	15.43	0.00	2.491	4.07	2.06	3.5	96.5	0.0	-0.26	1.59	0.75	0.89	2.61	12168	1498	2	0	0	0	0	logfile
✔	8KGM	37226	2024-08-09	2023-08-19	4.8	5.83	4.75	4.7	0.008	0.98	0.0	0.06	16.57	0.01	1.497	11.82	0.68	3.7	96.2	0.1	-2.85	0.74	0.45	—	4.7	0.003	0.72	0.0	0.05	16.38	0.00	2.094	15.58	0.00	2.8	97.2	0.0	-0.18	3.13	0.89	0.81	—	20494	2367	4	76	0	0	0	logfile
✔	8KGo	37228	2024-08-05	2023-08-19	3.4	3.44	3.32	3.4	0.011	1.14	0.0	0.07	11.21	0.01	2.219	3.95	0.92	7.2	92.8	0.0	-4.07	0.72	0.85	3.37	3.4	0.002	0.52	0.0	0.04	15.24	0.00	2.545	4.49	1.22	2.8	97.2	0.0	-0.14	0.83	0.72	0.85	1.52	12141	1494	2	0	0	0	0	logfile
✔	8Q88	18249	2024-08-02	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.004	0.73	0.0	0.05	13.95	0.00	2.617	5.52	2.02	1.6	98.4	0.0	-2.34	1.32	0.40	0.87	4.83	3468	456	6	0	0	0	0	logfile
✔	8TVH	41642	2024-08-03	2023-08-18	3.6	3.64	3.38	3.6	0.012	1.38	0.0	0.08	12.11	0.01	2.491	1.72	0.52	2.3	97.4	0.3	1.54	0.73	0.80	3.73	3.7	0.004	0.65	0.0	0.04	15.83	0.00	2.467	4.23	2.95	3.4	96.6	0.0	2.46	0.61	0.77	0.85	3.20	6744	939	12	0	3	0	0	logfile
✔	8TVF	41640	2024-08-04	2023-08-18	2.8	3.25	2.53	3.0	0.014	1.36	0.0	0.09	12.90	0.01	2.371	0.75	0.28	1.4	98.4	0.2	0.03	0.86	0.84	4.74	3.0	0.003	0.57	0.0	0.04	12.93	0.00	2.449	3.02	0.28	1.3	98.4	0.2	1.16	0.48	0.86	0.88	4.33	10461	1296	12	0	12	564	0	logfile
✔	8Q8C	18250	2024-08-03	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	8Q8D	18251	2024-08-03	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	3.0	0.003	0.54	0.0	0.05	15.95	0.00	2.460	1.27	1.52	1.6	98.4	0.0	-1.25	1.52	0.40	0.87	5.74	7074	456	6	0	0	0	3606	logfile
✔	8Q8L	18254	2024-08-02	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	3.2	0.005	0.80	0.0	0.05	14.85	0.00	2.510	4.03	2.56	3.9	96.1	0.0	-2.40	0.76	0.43	0.82	4.81	3405	447	6	0	0	0	0	logfile
✔	8TVG	41641	2024-08-03	2023-08-18	3.3	3.38	3.21	3.5	0.013	1.36	0.0	0.08	8.92	0.01	2.402	1.16	0.75	2.7	96.8	0.5	0.61	0.75	0.80	3.91	3.4	0.004	0.63	0.0	0.05	13.23	0.00	2.534	2.45	1.24	4.7	95.3	0.0	0.93	1.18	0.77	0.86	3.38	8310	1131	6	0	6	0	0	logfile
✔	8Q8M	18255	2024-08-03	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.004	1.22	0.0	0.05	15.14	0.00	1.807	3.68	1.01	3.6	96.4	0.0	-1.68	1.08	0.41	0.87	5.80	7074	456	6	0	0	0	3606	logfile
✔	8TVE	41639	2024-08-03	2023-08-18	3.9	4.16	3.79	4.1	0.013	1.52	0.0	0.09	9.81	0.01	2.433	3.65	0.33	2.2	97.8	0.0	0.30	0.76	0.82	3.62	4.1	0.003	0.65	0.0	0.04	14.01	0.00	2.585	3.82	3.21	3.5	96.5	0.0	1.63	0.64	0.79	0.85	2.30	9090	1227	6	0	6	0	0	logfile
✔	8Q8V	18262	2024-08-03	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.003	0.65	0.0	0.05	14.41	0.00	2.496	9.82	0.51	5.5	94.5	0.0	-3.15	2.98	0.32	0.78	4.63	7032	450	6	0	0	0	3588	logfile
✔	8Q8F	18253	2024-08-02	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.002	0.64	0.0	0.05	16.56	0.00	2.527	3.40	1.52	2.9	97.1	0.0	-1.75	3.51	0.42	0.89	4.01	3468	456	6	0	0	0	0	logfile
✔	8Q8U	18261	2024-08-03	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.002	0.58	0.0	0.05	13.40	0.00	2.632	3.02	0.27	1.4	98.6	0.0	-2.29	1.34	0.45	0.77	2.76	6642	426	6	0	0	0	3396	logfile
✔	8Q8R	18258	2024-08-02	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.004	0.75	0.0	0.05	16.88	0.00	2.597	4.39	3.28	7.7	92.3	0.0	-1.65	1.06	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile
✔	8Q8E	18252	2024-08-03	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.006	0.95	0.0	0.06	15.07	0.01	2.382	11.24	4.74	10.5	89.5	0.0	-3.41	1.88	0.36	0.80	3.35	6810	894	12	0	0	0	0	logfile
✔	8KGE	37218	2024-08-02	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.003	0.72	0.0	0.05	16.87	0.00	2.598	8.31	8.29	8.7	91.3	0.0	-2.06	0.38	0.48	0.81	2.59	3584	486	2	0	0	0	0	logfile

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