Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q7E	18214	2024-08-10	2023-08-16	4.4	6.88	4.07	3.4	0.003	0.49	0.0	0.04	4.57	0.00	2.245	1.35	0.00	0.6	99.4	0.0	0.43	0.64	0.62	—	3.3	0.003	0.55	0.0	0.03	3.67	0.00	2.408	1.37	0.00	4.3	95.7	0.0	1.75	0.95	0.76	0.80	—	29815	6016	12	0	0	0	0	logfile
✔	8Q7R	18230	2024-08-05	2023-08-16	3.71	2.48	3.70	2.0	0.004	0.74	0.0	0.04	16.34	0.01	1.987	9.49	1.26	8.2	91.8	0.0	-1.10	0.73	0.66	1.76	2.2	0.002	0.61	0.0	0.04	16.64	0.00	2.463	6.45	3.12	6.4	93.5	0.1	-0.11	0.45	0.75	0.70	1.65	12536	1726	10	0	4	0	0	logfile
✔	8Q7P	18228	2024-08-02	2023-08-16	3.28	3.24	3.20	3.3	0.011	1.82	0.0	0.09	11.62	0.01	2.479	0.00	0.00	1.4	98.6	0.0	-1.91	0.36	0.78	5.16	3.2	0.005	0.66	0.0	0.05	16.27	0.00	2.508	4.04	3.33	1.1	98.9	0.0	-2.26	1.40	0.42	0.87	5.21	3402	450	6	0	0	0	0	logfile
✔	8TUP	41628	2024-08-05	2023-08-16	3.3	3.44	3.30	3.4	0.002	0.41	0.0	0.04	14.81	0.00	2.277	4.52	0.00	2.2	97.8	0.0	2.02	0.65	0.78	2.89	3.4	0.003	0.51	0.0	0.04	15.34	0.00	2.612	5.58	2.85	1.3	98.7	0.0	2.53	0.33	0.59	0.81	2.71	12869	1590	12	0	3	66	0	logfile
✔	8Q7F	18215	2024-08-02	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.004	0.72	0.0	0.05	16.00	0.00	2.486	7.65	1.79	0.7	99.3	0.0	-1.67	0.78	0.39	0.81	3.82	3402	450	6	0	0	0	0	logfile
✔	8Q7M	18224	2024-08-02	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.005	0.75	0.0	0.05	15.14	0.00	2.612	4.41	1.54	2.0	98.0	0.0	-2.04	0.91	0.36	0.87	3.57	5109	669	9	0	0	0	0	logfile
✔	8Q7C	18212	2024-08-08	2023-08-16	2.9	4.06	3.13	3.6	0.004	0.54	0.0	0.04	14.30	0.00	2.140	7.64	3.64	3.1	96.9	0.0	-0.10	0.90	0.90	4.16	3.6	0.004	0.61	0.0	0.04	14.70	0.00	2.449	4.98	1.99	2.9	97.1	0.0	0.11	0.24	0.90	0.89	3.98	21348	2670	3	0	0	0	0	logfile
✔	8TU6	41617	2024-08-07	2023-08-15	3.12	3.16	3.01	3.2	0.004	0.59	0.0	0.04	16.95	0.00	2.021	5.71	0.88	3.0	97.0	0.0	0.51	0.66	0.78	3.49	3.3	0.004	0.54	0.0	0.04	16.95	0.00	2.200	4.43	1.85	3.3	96.7	0.0	1.03	0.49	0.74	0.83	3.41	20338	1233	2	0	0	0	10170	logfile
✔	8KFA	37203	2024-08-07	2023-08-15	3.04	3.87	3.20	3.4	0.002	0.48	0.0	0.04	13.59	0.00	2.226	9.28	0.00	2.9	97.1	0.0	-0.20	0.83	0.82	2.55	3.4	0.003	0.60	0.0	0.04	15.15	0.00	2.449	9.03	2.16	3.2	96.8	0.0	-0.42	0.37	0.84	0.84	2.42	18665	2421	9	0	0	0	0	logfile
✔	8TU9	41620	2024-08-03	2023-08-15	3.26	3.58	3.38	3.6	0.011	1.68	0.0	0.08	14.55	0.02	2.275	2.59	0.00	4.4	95.6	0.0	-0.68	0.66	0.81	2.08	3.6	0.004	0.65	0.0	0.04	15.37	0.00	2.375	3.31	1.30	4.4	95.6	0.0	0.87	0.48	0.63	0.84	2.51	8390	1066	4	0	8	0	0	logfile
✔	8Q74	18203	2024-08-02	2023-08-15	3.68	4.60	3.68	4.2	0.004	1.02	0.0	0.05	14.01	0.01	1.633	20.98	0.15	15.9	83.2	0.9	-2.37	0.66	0.80	1.25	4.3	0.003	0.87	0.0	0.05	16.41	0.01	2.112	15.48	2.62	12.4	86.7	0.9	-1.33	1.03	0.66	0.80	0.78	5943	783	2	0	1	0	0	logfile
✔	8Q75	18204	2024-08-02	2023-08-15	3.2	4.13	3.25	3.8	0.006	1.56	0.0	0.05	14.77	0.01	1.828	20.97	0.62	12.3	86.1	1.6	-2.02	0.69	0.83	1.72	3.8	0.004	0.87	0.0	0.05	16.30	0.01	1.904	13.73	2.19	11.0	88.2	0.8	-0.97	0.67	0.69	0.83	1.25	5870	774	2	0	2	0	0	logfile
✔	8Q73	18202	2024-08-02	2023-08-15	3.58	5.00	3.87	4.6	0.004	0.92	0.0	0.05	14.50	0.01	2.243	12.12	0.00	12.6	86.4	1.0	-2.53	0.65	0.76	0.56	4.6	0.004	0.86	0.0	0.05	16.21	0.00	2.502	15.38	1.86	12.2	86.9	0.9	-1.62	1.07	0.66	0.79	0.56	5909	779	1	0	0	0	0	logfile
✔	8TTL	41610	2024-08-02	2023-08-14	2.6	2.56	2.61	2.8	0.013	2.14	8.0	0.13	13.17	0.01	2.584	0.00	1.35	7.1	92.0	0.9	-3.09	0.42	0.79	4.83	2.8	0.002	0.62	0.0	0.05	16.14	0.01	2.514	2.51	2.02	4.4	95.6	0.0	-2.30	1.51	0.37	0.87	5.35	5190	351	6	0	0	0	2607	logfile
✔	8Q6P	18192	2024-08-06	2023-08-14	3.53	3.92	3.77	3.9	0.002	0.48	0.0	0.04	14.14	0.00	2.234	5.07	0.11	2.4	97.6	0.0	1.50	0.55	0.78	1.46	3.9	0.003	0.66	0.0	0.04	16.89	0.00	2.489	8.04	2.42	2.9	97.1	0.0	1.15	1.68	0.53	0.79	1.25	16794	2104	12	0	5	0	0	logfile
✔	8TTE	41605	2024-08-02	2023-08-13	3.26	3.39	2.96	3.5	0.006	0.92	0.0	0.06	16.55	0.00	2.301	10.89	0.94	4.2	95.8	0.0	0.55	0.58	0.80	2.53	3.5	0.004	0.75	0.0	0.04	17.58	0.00	2.608	11.71	4.39	4.5	95.5	0.0	1.89	0.32	0.56	0.80	2.34	2991	385	2	0	0	0	0	logfile
✔	8TTF	41606	2024-08-02	2023-08-13	3.61	3.77	3.24	3.8	0.003	0.60	0.0	0.04	13.41	0.00	2.144	9.30	0.00	2.4	97.6	0.0	1.37	0.61	0.77	1.92	3.8	0.003	0.64	0.0	0.04	15.75	0.00	2.567	7.52	3.29	3.3	96.7	0.0	1.65	0.35	0.60	0.77	1.72	4763	621	3	0	0	0	0	logfile
✔	8TTG	41607	2024-08-02	2023-08-13	3.35	3.48	3.26	3.6	0.004	0.74	0.0	0.04	16.51	0.00	2.114	12.06	0.62	2.3	97.7	0.0	2.06	0.55	0.77	1.24	3.5	0.004	0.68	0.0	0.04	17.01	0.01	2.529	9.61	6.81	2.6	97.4	0.0	1.98	0.90	0.56	0.80	1.26	3026	389	2	0	0	0	0	logfile
✔	8TSW	41601	2024-08-07	2023-08-12	3.1	3.49	—	3.4	0.003	0.62	0.0	0.04	17.90	0.00	2.210	6.74	0.32	3.3	96.7	0.0	0.87	0.71	0.85	2.60	3.4	0.003	0.58	0.0	0.04	17.98	0.00	2.501	7.23	2.58	2.9	97.1	0.0	1.41	0.28	0.72	0.85	2.56	20326	2508	12	0	0	0	0	logfile
✔	8TSL	41595	2024-08-07	2023-08-11	3.4	3.46	—	3.4	0.004	0.67	0.0	0.05	17.49	0.01	2.231	6.97	0.47	3.0	97.0	0.0	0.93	0.73	0.86	2.61	3.4	0.004	0.75	1.0	0.04	17.74	0.00	2.024	8.78	3.80	3.0	97.0	0.0	1.58	1.13	0.72	0.86	2.76	21392	2646	12	0	0	0	0	logfile

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