Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KEF	37154	2024-08-06	2023-08-11	3.44	3.70	3.36	3.5	0.015	1.90	30.0	0.11	14.96	0.01	1.989	8.10	1.44	6.0	94.0	0.0	-0.51	0.45	0.73	2.90	3.5	0.004	0.68	0.0	0.05	15.81	0.00	2.542	9.60	1.92	6.2	93.8	0.0	-0.33	0.47	0.49	0.85	2.86	17802	2226	12	0	0	0	0	logfile
✔	8KE9	37150	2024-08-02	2023-08-11	3.76	4.61	3.81	3.9	0.003	0.70	0.0	0.08	14.47	0.00	1.931	12.94	7.55	5.7	94.1	0.2	-1.09	0.74	0.78	0.99	3.9	0.004	0.72	0.0	0.04	14.35	0.00	2.493	15.83	2.21	5.7	94.1	0.2	-0.52	1.82	0.76	0.86	1.44	4929	654	3	0	0	0	0	logfile
✔	8KEi	37159	2024-08-04	2023-08-11	3.56	4.04	3.68	3.9	0.004	0.73	0.0	0.05	18.45	0.00	2.150	9.02	0.46	6.0	94.0	0.0	-0.29	0.69	0.83	1.56	3.9	0.003	0.68	0.0	0.04	17.64	0.00	2.476	7.55	6.11	6.4	93.6	0.0	-0.20	0.31	0.69	0.83	1.51	10209	1272	9	0	11	0	0	logfile
✔	8TSH	41592	2024-08-08	2023-08-11	3.1	3.43	—	3.3	0.003	0.57	0.0	0.04	18.66	0.00	2.003	6.81	0.19	2.4	97.6	0.0	1.77	0.72	0.86	2.52	3.3	0.004	0.57	0.0	0.04	18.77	0.00	1.935	7.61	4.15	2.3	97.7	0.0	2.12	0.23	0.73	0.87	2.34	24254	3000	14	0	4	0	0	logfile
✔	8TSi	41593	2024-08-07	2023-08-11	4.4	4.04	3.79	4.0	0.004	1.20	0.0	0.05	17.52	0.00	2.225	8.10	0.68	3.9	96.1	0.0	0.86	0.63	0.75	—	4.0	0.003	0.66	0.0	0.04	14.80	0.00	2.466	7.59	0.00	3.3	96.7	0.0	1.26	3.46	0.65	0.77	—	20248	2488	14	0	4	0	0	logfile
✔	8TSL	41595	2024-08-07	2023-08-11	3.4	3.46	—	3.4	0.004	0.67	0.0	0.05	17.49	0.01	2.231	6.97	0.47	3.0	97.0	0.0	0.93	0.73	0.86	2.61	3.4	0.004	0.75	1.0	0.04	17.74	0.00	2.024	8.78	3.80	3.0	97.0	0.0	1.58	1.13	0.72	0.86	2.76	21392	2646	12	0	0	0	0	logfile
✔	8TSR	41599	2024-08-03	2023-08-11	3.9	4.25	3.96	4.2	0.005	0.83	0.0	0.05	16.02	0.01	2.219	11.20	0.51	3.2	96.8	0.0	0.80	0.71	0.76	0.88	4.2	0.003	0.77	0.0	0.04	17.18	0.00	2.543	9.71	3.69	3.3	96.7	0.0	1.63	1.21	0.70	0.76	0.88	8888	1146	2	0	0	0	0	logfile
✔	8TSP	41597	2024-08-03	2023-08-11	3.9	4.19	3.93	4.2	0.004	0.75	0.0	0.05	16.52	0.01	2.201	10.09	0.72	3.0	97.0	0.0	0.50	0.68	0.74	0.50	4.2	0.003	0.64	0.0	0.04	17.46	0.00	2.584	7.99	4.92	3.2	96.8	0.0	1.70	0.60	0.68	0.72	0.50	8888	1146	2	0	0	0	0	logfile
✔	8TSQ	41598	2024-08-03	2023-08-11	3.6	3.91	3.59	3.9	0.004	0.65	0.0	0.04	16.89	0.00	2.234	10.06	0.51	4.3	95.7	0.0	1.04	0.67	0.72	0.85	4.0	0.003	0.66	0.0	0.04	17.32	0.00	2.502	9.35	3.48	4.2	95.8	0.0	1.07	3.22	0.68	0.76	0.55	8918	1150	2	0	0	0	0	logfile
✔	8Q6J	18188	2024-08-04	2023-08-11	3.3	4.21	3.41	3.8	0.007	0.76	0.0	0.05	15.11	0.01	2.029	19.52	5.69	9.6	90.4	0.1	-1.61	0.86	0.75	1.78	3.8	0.005	0.70	0.0	0.05	14.52	0.01	2.111	12.98	3.35	8.4	91.5	0.1	-1.34	1.31	0.87	0.78	1.32	11535	1494	8	0	9	0	0	logfile
✔	8Q63	18183	2024-08-04	2023-08-10	3.68	3.75	3.69	3.8	0.007	1.03	0.0	0.09	18.50	0.00	2.121	12.49	0.09	4.5	95.5	0.0	0.60	0.74	0.73	1.25	3.8	0.003	0.69	0.0	0.04	19.58	0.00	2.478	12.03	2.72	3.7	96.3	0.0	0.61	0.45	0.74	0.73	1.37	11346	1244	6	69	1	0	0	logfile
✔	8KD3	37123	2024-08-09	2023-08-09	2.9	2.96	2.85	3.0	0.004	0.77	1.0	0.04	24.41	0.01	1.281	7.68	0.13	5.1	94.9	0.0	-1.28	0.74	0.66	1.31	3.0	0.004	0.65	0.0	0.04	24.58	0.00	1.956	10.84	2.81	4.4	95.6	0.0	-0.10	0.70	0.83	0.87	2.35	27576	2563	17	328	1	0	0	logfile
✔	8KD2	37122	2024-08-08	2023-08-09	3.02	3.13	2.97	3.0	0.004	0.70	0.0	0.04	25.70	0.01	1.457	8.15	0.68	4.3	95.7	0.0	-0.56	0.78	0.74	1.28	3.0	0.004	0.64	0.0	0.04	25.37	0.00	2.108	11.70	3.91	4.3	95.7	0.0	0.26	0.91	0.82	0.82	1.81	24694	2164	16	348	0	0	0	logfile
✔	8KD4	37124	2024-08-09	2023-08-09	2.93	3.01	2.89	2.9	0.004	0.81	0.0	0.04	24.50	0.01	2.023	8.53	0.59	5.0	95.0	0.0	-1.48	0.77	0.74	1.45	2.9	0.005	0.70	0.0	0.04	24.80	0.00	1.993	11.55	3.15	4.5	95.5	0.0	-0.05	1.23	0.83	0.86	2.38	27064	2498	17	328	1	0	0	logfile
✔	8KDB	37130	2024-08-07	2023-08-09	2.7	2.73	2.75	2.8	0.003	0.53	0.0	0.04	13.33	0.00	1.999	5.31	0.04	2.0	98.0	0.0	1.35	0.78	0.86	2.98	2.8	0.004	0.59	0.0	0.04	15.56	0.00	1.999	4.34	1.27	2.2	97.8	0.0	1.72	1.14	0.77	0.87	2.70	20861	2584	8	0	3	0	0	logfile
✔	8KD5	37125	2024-08-09	2023-08-09	2.9	3.00	3.01	3.0	0.003	0.75	0.0	0.04	24.46	0.01	2.044	8.17	0.54	4.3	95.6	0.1	-1.18	0.76	0.74	1.52	3.0	0.004	0.65	0.0	0.04	24.71	0.00	2.037	11.17	2.74	4.7	95.3	0.0	0.25	0.67	0.82	0.86	2.48	26908	2502	17	319	1	0	0	logfile
✔	8Q5H	18179	2024-08-04	2023-08-09	4.5	4.83	4.50	4.3	0.004	0.82	0.0	0.04	15.49	0.01	2.072	15.56	0.00	3.5	96.5	0.1	0.62	0.66	0.45	—	4.3	0.003	0.75	0.0	0.04	15.52	0.00	2.379	13.88	0.00	3.4	96.5	0.1	0.60	1.87	0.76	0.66	—	9574	1173	7	0	0	0	0	logfile
✔	8KDE	37133	2024-08-08	2023-08-09	2.6	2.45	—	3.0	0.007	1.18	0.0	0.04	17.45	0.01	2.069	4.73	0.00	3.8	96.0	0.2	1.46	0.81	0.84	3.51	3.0	0.004	0.62	1.0	0.04	16.11	0.00	2.200	7.42	1.01	3.4	96.4	0.1	1.82	0.33	0.81	0.86	3.02	22087	2344	28	0	72	0	0	logfile
✔	8TR9	41574	2024-08-02	2023-08-09	3.2	3.80	3.19	3.6	0.002	0.54	0.0	0.04	13.53	0.00	2.224	9.75	0.00	3.7	96.3	0.0	-0.43	0.85	0.88	3.75	3.6	0.003	0.56	0.0	0.04	15.02	0.00	2.481	7.34	1.01	3.7	96.3	0.0	-0.25	0.59	0.85	0.89	3.98	5442	684	2	1	0	0	0	logfile
✔	8TR3	41569	2024-08-06	2023-08-09	3.74	4.06	3.63	3.9	0.005	0.72	0.0	0.05	16.05	0.00	2.243	11.81	0.34	8.5	91.5	0.0	-0.94	0.79	0.80	1.34	3.9	0.004	0.73	0.0	0.05	16.42	0.00	2.499	10.67	4.07	8.0	92.0	0.0	-1.26	0.44	0.79	0.82	1.23	16401	2028	21	0	39	0	0	logfile

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