Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KDC	37131	2024-08-07	2023-08-09	3.3	3.76	3.41	3.7	0.003	0.49	0.0	0.04	14.09	0.00	2.001	6.45	0.05	2.6	97.4	0.0	1.17	0.71	0.79	2.09	3.7	0.003	0.52	0.0	0.04	15.42	0.00	2.069	5.00	0.85	3.0	97.0	0.0	1.37	0.25	0.76	0.83	1.77	18808	2329	7	0	3	0	0	logfile
✔	8TR9	41574	2024-08-02	2023-08-09	3.2	3.80	3.19	3.6	0.002	0.54	0.0	0.04	13.53	0.00	2.224	9.75	0.00	3.7	96.3	0.0	-0.43	0.85	0.88	3.75	3.6	0.003	0.56	0.0	0.04	15.02	0.00	2.481	7.34	1.01	3.7	96.3	0.0	-0.25	0.59	0.85	0.89	3.98	5442	684	2	1	0	0	0	logfile
✔	8KCX	37113	2024-08-04	2023-08-08	2.96	3.37	2.90	3.3	0.005	0.77	0.0	0.06	20.46	0.00	2.273	4.87	0.39	1.8	98.2	0.0	-2.46	0.59	0.81	2.56	3.3	0.003	0.65	0.0	0.04	16.01	0.00	2.492	4.29	4.90	1.3	98.7	0.0	1.20	1.27	0.59	0.82	2.85	9486	1142	12	0	22	0	0	logfile
✔	8TQZ	41566	2024-08-08	2023-08-08	2.9	3.47	2.97	3.4	0.002	0.50	0.0	0.04	17.76	0.00	2.049	6.09	4.50	3.5	96.5	0.0	1.08	0.73	0.81	2.05	3.4	0.003	0.61	0.0	0.04	17.58	0.00	2.422	5.85	4.14	5.1	94.9	0.0	0.57	0.38	0.76	0.85	2.64	22334	2863	10	0	0	0	0	logfile
✔	8KCW	37112	2024-08-04	2023-08-08	2.77	3.13	2.73	3.1	0.005	0.82	0.0	0.05	18.78	0.01	2.126	5.92	0.18	2.8	97.2	0.0	-4.23	0.60	0.82	3.29	3.1	0.004	1.47	2.0	0.05	15.21	0.00	1.940	5.44	0.99	1.7	98.3	0.0	1.29	1.99	0.62	0.85	3.14	10484	1252	12	0	26	0	0	logfile
✔	8TQo	41510	2024-08-04	2023-08-08	3.1	3.83	3.25	3.7	0.002	0.54	0.0	0.04	16.86	0.00	2.202	8.77	0.16	4.5	95.5	0.0	0.14	0.76	0.83	1.75	3.7	0.003	0.58	0.0	0.04	17.04	0.00	2.496	7.38	3.74	4.4	95.6	0.0	0.55	1.02	0.71	0.80	2.59	11122	1437	4	0	0	0	0	logfile
✔	8KCC	37099	2024-08-06	2023-08-07	3.1	4.04	3.18	3.5	0.004	0.55	0.0	0.03	25.14	0.00	2.199	11.44	1.20	1.6	98.4	0.0	-0.05	0.86	0.80	1.22	3.5	0.003	0.59	0.0	0.03	26.04	0.00	2.312	10.54	1.20	2.7	97.3	0.0	2.38	0.75	0.89	0.85	1.51	16271	1270	12	300	2	0	0	logfile
✔	8TQi	41505	2024-08-09	2023-08-07	3.24	4.34	3.18	3.7	0.006	0.89	2.0	0.05	15.99	0.00	1.816	5.29	3.75	4.9	94.8	0.3	-0.63	0.77	0.81	3.46	3.7	0.003	0.52	0.0	0.04	14.89	0.00	2.398	2.22	1.03	4.9	95.0	0.2	-0.65	0.61	0.78	0.81	3.73	24359	1661	10	0	0	0	11831	logfile
✔	8KCB	37098	2024-08-05	2023-08-07	3.17	4.13	3.28	3.5	0.005	0.57	0.0	0.03	26.34	0.00	2.302	8.81	0.23	1.3	98.6	0.1	-1.26	0.83	0.77	0.89	3.5	0.004	0.65	0.0	0.03	27.44	0.00	2.143	10.29	2.42	2.1	97.9	0.0	2.48	1.07	0.85	0.86	0.99	14071	1184	12	252	2	0	0	logfile
✔	8KCi	37105	2024-08-04	2023-08-07	3.94	4.27	3.89	4.2	0.004	0.67	0.0	0.04	18.61	0.00	2.001	9.47	1.35	10.0	89.8	0.3	-0.20	0.63	0.70	0.56	4.2	0.003	0.68	0.0	0.04	18.57	0.00	1.992	7.81	3.00	9.6	90.4	0.0	-0.25	1.31	0.65	0.72	0.47	9515	1203	2	0	4	0	0	logfile
✔	8TQK	41506	2024-08-10	2023-08-07	3.2	4.28	3.15	3.5	0.005	1.00	3.0	0.06	17.68	0.00	1.019	12.45	2.37	5.3	94.5	0.2	-1.26	0.84	0.76	2.09	3.6	0.005	0.61	0.0	0.04	17.34	0.00	2.283	7.55	2.13	6.6	93.2	0.1	-0.66	0.80	0.86	0.84	1.99	29229	1912	9	0	0	0	14504	logfile
✔	8TQM	41508	2024-08-03	2023-08-07	3.2	3.40	3.14	3.4	0.007	0.92	0.0	0.04	13.43	0.00	1.724	12.07	0.00	2.5	97.5	0.0	2.28	0.62	0.78	2.62	3.4	0.003	0.50	0.0	0.04	15.14	0.00	2.331	6.94	0.79	2.6	97.4	0.0	2.46	0.62	0.58	0.80	2.13	7231	843	2	0	7	0	0	logfile
✔	8KC7	37096	2024-08-05	2023-08-06	3.46	4.35	3.40	3.6	0.003	0.70	0.0	0.04	16.70	0.00	2.211	9.82	0.93	6.6	93.4	0.0	-1.18	0.84	0.79	1.58	3.7	0.006	0.74	0.0	0.04	17.17	0.00	2.525	12.87	2.55	8.9	91.1	0.0	-0.01	1.81	0.86	0.85	1.77	14326	1748	6	0	0	0	0	logfile
✔	8KC2	37090	2024-08-03	2023-08-05	2.6	2.24	2.62	2.0	0.005	0.75	0.0	0.05	14.84	0.01	1.829	5.70	0.87	6.9	93.0	0.1	-0.90	0.79	0.81	3.58	2.0	0.004	0.66	0.0	0.04	16.81	0.00	1.947	2.53	2.18	6.7	93.3	0.0	-0.30	0.48	0.84	0.85	3.68	6471	790	4	0	5	0	0	logfile
✔	8TPN	41478	2024-08-03	2023-08-04	4.07	4.04	4.01	4.0	0.002	0.46	0.0	0.04	15.10	0.00	2.220	5.18	0.00	2.8	97.2	0.0	2.66	0.74	0.81	—	4.0	0.004	0.57	0.0	0.04	15.07	0.00	2.222	3.77	0.00	2.5	97.5	0.0	1.98	0.35	0.75	0.82	—	8612	1102	4	0	4	0	0	logfile
✔	8TPP	41480	2024-08-03	2023-08-04	3.64	3.68	3.65	3.8	0.003	0.53	0.0	0.04	16.55	0.00	2.227	6.28	0.11	2.5	97.5	0.0	2.18	0.76	0.81	1.00	3.8	0.002	0.54	0.0	0.04	17.18	0.00	2.340	4.39	3.46	2.8	97.2	0.0	2.49	0.29	0.77	0.81	1.05	9116	1168	4	0	4	0	0	logfile
✔	8Q3K	18129	2024-08-10	2023-08-04	2.92	3.31	—	3.1	0.003	0.51	0.0	0.04	14.83	0.00	1.824	5.45	0.15	2.0	98.0	0.0	0.61	0.80	0.90	3.50	3.1	0.006	0.82	1.0	0.05	16.05	0.00	1.943	8.97	1.39	2.6	97.4	0.0	0.59	0.93	0.78	0.89	3.15	28932	3633	12	0	7	0	0	logfile
✔	8TPA	41471	2024-08-06	2023-08-04	3.0	3.16	3.09	3.2	0.022	1.81	0.0	0.11	10.43	0.01	2.338	1.47	0.00	1.3	98.7	0.0	1.11	0.73	0.82	4.65	3.2	0.003	0.68	0.0	0.05	15.09	0.00	2.504	7.76	2.35	2.1	97.9	0.0	0.27	1.34	0.73	0.84	3.17	17286	2154	18	0	18	0	0	logfile
✔	8TP9	41470	2024-08-06	2023-08-04	3.1	3.33	3.17	3.4	0.020	1.82	7.0	0.11	10.91	0.01	2.334	2.44	0.00	1.9	98.1	0.0	0.64	0.71	0.76	3.47	3.4	0.004	0.70	0.0	0.04	15.15	0.00	2.542	8.35	2.20	4.1	95.9	0.0	-0.76	1.81	0.71	0.80	3.42	17118	2142	15	0	15	0	0	logfile
✔	8TP6	41468	2024-08-06	2023-08-04	3.1	3.47	3.28	3.4	0.021	1.77	3.0	0.11	11.87	0.01	2.326	2.28	0.00	1.2	98.8	0.0	1.02	0.74	0.80	3.71	3.4	0.005	0.86	1.0	0.05	14.34	0.00	2.319	8.21	1.45	3.0	97.0	0.0	0.18	1.80	0.71	0.80	2.87	17008	2126	18	0	27	0	0	logfile

• ← previous
• Page 53 of 485
• next →