Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TP5	41467	2024-08-06	2023-08-04	2.9	3.29	2.95	3.2	0.021	1.86	1.0	0.11	10.61	0.01	2.336	1.75	0.11	1.8	98.2	0.0	1.07	0.76	0.79	3.53	3.2	0.003	0.65	0.0	0.04	15.22	0.00	2.475	6.25	2.07	2.8	97.2	0.0	0.63	1.24	0.78	0.85	3.48	17508	2205	18	0	18	0	0	logfile
✔	8TP6	41468	2024-08-06	2023-08-04	3.1	3.47	3.28	3.4	0.021	1.77	3.0	0.11	11.87	0.01	2.326	2.28	0.00	1.2	98.8	0.0	1.02	0.74	0.80	3.71	3.4	0.005	0.86	1.0	0.05	14.34	0.00	2.319	8.21	1.45	3.0	97.0	0.0	0.18	1.80	0.71	0.80	2.87	17008	2126	18	0	27	0	0	logfile
✔	8Q3K	18129	2024-08-10	2023-08-04	2.92	3.31	—	3.1	0.003	0.51	0.0	0.04	14.83	0.00	1.824	5.45	0.15	2.0	98.0	0.0	0.61	0.80	0.90	3.50	3.1	0.006	0.82	1.0	0.05	16.05	0.00	1.943	8.97	1.39	2.6	97.4	0.0	0.59	0.93	0.78	0.89	3.15	28932	3633	12	0	7	0	0	logfile
✔	8TP3	41465	2024-08-05	2023-08-04	3.6	3.91	3.62	3.9	0.020	1.72	0.0	0.11	10.55	0.01	2.336	0.86	0.07	1.7	98.3	0.0	0.78	0.72	0.73	2.35	3.9	0.003	0.68	0.0	0.04	14.85	0.00	2.501	7.84	2.84	2.4	97.6	0.0	0.33	1.47	0.72	0.73	1.91	13691	1700	14	0	20	0	0	logfile
✔	8Q3N	18130	2024-08-07	2023-08-04	2.63	3.29	2.65	3.0	0.003	0.64	0.0	0.04	16.08	0.00	1.991	9.33	1.54	1.6	98.4	0.0	0.95	0.86	0.85	2.16	3.0	0.003	0.69	0.0	0.04	16.10	0.00	1.997	7.49	1.68	2.2	97.8	0.0	0.84	1.21	0.87	0.90	2.19	19912	2508	12	0	10	0	0	logfile
✔	8Q3F	18126	2024-08-02	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.56	0.0	0.04	15.76	0.00	2.640	3.89	0.99	1.6	98.4	0.0	1.54	0.93	0.90	0.81	0.79	4599	578	1	0	0	0	0	logfile
✔	8TP2	41464	2024-08-05	2023-08-04	3.1	3.01	3.03	3.2	0.021	1.69	0.0	0.10	10.56	0.01	2.009	1.70	0.00	2.2	97.8	0.0	0.79	0.77	0.85	4.18	3.1	0.003	0.61	0.0	0.04	14.50	0.00	2.450	5.26	1.43	2.6	97.4	0.0	0.49	1.36	0.77	0.86	3.13	13485	1678	11	0	19	0	0	logfile
✔	8Toi	41453	2024-08-04	2023-08-03	2.64	2.63	2.63	3.0	0.010	1.86	0.0	0.05	24.38	0.01	2.318	2.95	0.00	3.6	96.4	0.0	-1.60	0.80	0.84	2.77	2.9	0.003	1.10	0.0	0.04	20.06	0.00	2.268	6.29	0.84	3.8	96.2	0.0	1.80	0.48	0.81	0.88	3.15	11414	1298	4	0	40	0	0	logfile
✔	8ToK	41454	2024-08-04	2023-08-03	3.84	3.53	3.75	3.8	0.004	0.60	0.0	0.04	17.56	0.01	2.195	4.14	0.00	4.2	95.8	0.0	1.87	0.75	0.81	1.14	3.8	0.003	0.57	0.0	0.04	17.81	0.00	2.240	3.88	2.76	4.9	95.1	0.0	2.05	0.30	0.74	0.82	1.41	9908	1258	4	0	4	0	0	logfile
✔	8KAE	37008	2024-08-03	2023-08-03	3.18	3.46	3.28	3.5	0.013	1.06	0.0	0.06	13.54	0.01	2.147	7.23	0.00	7.2	92.8	0.0	-1.16	0.61	0.81	3.21	3.5	0.003	0.59	0.0	0.04	14.42	0.00	2.523	5.02	1.87	4.3	95.7	0.0	0.88	0.37	0.62	0.82	2.01	8440	1105	6	0	1	0	0	logfile
✔	8ToF	41449	2024-08-10	2023-08-03	2.8	3.39	2.88	3.1	0.010	1.00	3.0	0.04	24.37	0.01	1.828	11.53	3.09	6.6	93.0	0.5	0.08	0.78	0.70	2.65	3.1	0.004	0.77	1.0	0.04	24.28	0.00	2.000	9.75	2.55	5.5	94.2	0.3	0.91	0.48	0.80	0.83	2.26	29102	2689	20	352	15	0	0	logfile
✔	8Q3B	18120	2024-08-10	2023-08-03	2.69	3.40	2.70	3.3	0.003	0.56	0.0	0.04	15.89	0.00	1.424	4.67	0.52	2.0	98.0	0.0	0.94	0.79	0.89	3.59	3.3	0.005	0.63	0.0	0.05	16.44	0.00	2.182	6.03	1.57	2.1	97.9	0.0	0.76	1.69	0.66	0.79	3.37	29389	3724	12	0	7	0	0	logfile
✔	8ToB	41442	2024-08-08	2023-08-03	3.14	3.34	2.61	2.9	0.002	0.45	0.0	0.04	13.68	0.00	2.194	4.63	0.00	3.1	96.9	0.1	0.69	0.78	0.93	4.49	2.9	0.003	0.52	0.0	0.04	15.04	0.00	2.408	3.56	1.52	3.0	97.0	0.0	0.95	0.26	0.79	0.94	4.34	22242	3058	44	0	0	0	0	logfile
✔	8KB4	37069	2024-08-02	2023-08-03	3.1	3.80	3.15	3.6	0.004	0.70	0.0	0.04	19.10	0.00	2.151	19.36	0.00	6.1	93.9	0.0	1.68	0.65	0.85	2.49	3.6	0.002	0.57	0.0	0.04	16.19	0.00	2.545	3.84	0.84	4.5	95.5	0.0	2.14	1.25	0.64	0.84	2.08	3367	402	2	0	4	0	0	logfile
✔	8ToM	41456	2024-08-11	2023-08-03	3.1	3.47	3.43	3.6	0.007	0.67	0.0	0.05	15.48	0.00	2.005	8.60	4.60	7.8	92.0	0.2	-1.74	0.49	0.47	0.19	3.4	0.003	0.71	1.0	0.04	17.77	0.00	2.053	7.40	2.85	5.6	94.4	0.1	-0.42	1.32	0.71	0.81	1.73	31753	3827	12	80	7	0	0	logfile
✔	8KB5	37070	2024-08-04	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.005	0.61	0.0	0.04	28.30	0.00	2.530	3.62	2.07	0.8	99.2	0.0	2.76	0.23	0.78	0.85	3.64	11953	758	10	290	0	0	0	logfile
✔	8To1	41433	2024-08-11	2023-08-02	2.8	3.12	2.91	3.1	0.010	1.09	3.0	0.07	14.80	0.01	1.933	13.48	4.78	7.3	91.8	0.9	-1.28	0.67	0.84	2.73	3.1	0.004	0.74	1.0	0.04	16.75	0.00	2.193	6.03	2.60	5.2	94.7	0.0	0.02	0.62	0.71	0.87	2.47	31386	3822	12	70	7	0	0	logfile
✔	8TNY	41429	2024-08-03	2023-08-02	3.55	3.95	3.71	3.9	0.006	0.86	0.0	0.05	17.95	0.00	2.118	12.14	5.02	5.3	94.6	0.2	0.96	0.61	0.81	1.85	3.9	0.004	0.64	0.0	0.04	17.33	0.00	2.563	7.26	6.13	4.0	96.0	0.0	1.74	1.06	0.63	0.83	1.83	8026	1090	4	0	2	0	0	logfile
✔	8TNX	41428	2024-08-03	2023-08-02	3.03	3.42	3.12	3.4	0.007	0.90	0.0	0.06	16.34	0.02	2.278	7.41	4.12	2.8	96.8	0.4	0.06	0.59	0.80	2.75	3.4	0.003	0.58	0.0	0.04	14.96	0.00	2.584	4.20	3.38	2.0	98.0	0.0	1.75	0.94	0.55	0.81	3.00	8272	1152	4	0	2	0	0	logfile
✔	8Q2L	18112	2024-08-02	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.007	0.73	0.0	0.05	19.42	0.00	2.594	3.27	2.38	1.9	98.1	0.0	-1.88	1.25	0.41	0.93	7.30	3300	432	6	0	0	0	0	logfile

• ← previous
• Page 54 of 485
• next →