Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q2L	18112	2024-08-02	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.007	0.73	0.0	0.05	19.42	0.00	2.594	3.27	2.38	1.9	98.1	0.0	-1.88	1.25	0.41	0.93	7.30	3300	432	6	0	0	0	0	logfile
✔	8Q2J	18109	2024-08-02	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.005	0.65	0.0	0.05	17.45	0.00	2.433	4.07	0.50	0.2	99.8	0.0	-2.03	1.55	0.43	0.90	7.38	3507	462	6	0	0	0	0	logfile
✔	8TNW	41427	2024-08-03	2023-08-02	3.17	3.12	2.81	3.2	0.005	0.80	0.0	0.06	16.69	0.01	2.170	8.67	3.90	4.4	95.6	0.0	0.74	0.58	0.85	2.05	3.2	0.005	0.65	0.0	0.04	16.44	0.00	2.534	6.69	3.67	4.7	95.3	0.0	1.12	0.30	0.57	0.87	2.05	8874	1210	4	0	2	0	0	logfile
✔	8TNH	41416	2024-08-06	2023-08-01	3.32	4.67	3.47	4.0	0.005	0.77	0.0	0.06	18.14	0.00	2.191	6.17	0.48	9.1	90.7	0.2	-1.36	0.85	0.80	2.47	4.1	0.004	0.78	0.0	0.05	16.15	0.00	2.364	6.69	2.36	8.3	91.6	0.1	-1.08	1.72	0.87	0.85	2.53	17667	2113	35	0	76	0	0	logfile
✔	8TNi	41417	2024-08-07	2023-08-01	3.61	4.53	3.73	3.9	0.005	0.88	0.0	0.05	18.76	0.01	2.151	13.17	0.54	9.9	89.7	0.4	-1.94	0.83	0.73	2.00	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.336	12.52	3.55	9.0	90.5	0.5	-1.65	1.04	0.88	0.86	2.08	19399	2356	31	0	72	0	0	logfile
✔	8TNG	41415	2024-08-06	2023-08-01	3.58	4.91	3.71	4.2	0.005	0.82	0.0	0.06	18.19	0.00	2.093	8.47	0.60	10.8	88.8	0.4	-2.42	0.83	0.76	2.05	4.2	0.003	0.86	0.0	0.05	15.96	0.00	2.170	9.72	2.41	9.4	90.2	0.4	-2.16	1.34	0.87	0.84	2.04	17495	2101	35	0	76	0	0	logfile
✔	8K9i	36987	2024-08-03	2023-08-01	4.2	2.69	4.05	3.8	0.018	1.41	0.0	0.10	15.71	0.01	2.377	21.05	5.67	6.7	93.3	0.0	-1.38	0.61	0.54	—	3.8	0.003	0.69	0.0	0.04	14.64	0.00	2.481	13.79	0.00	2.9	97.1	0.0	0.86	1.29	0.65	0.59	—	7657	939	4	0	0	0	0	logfile
✔	8TN9	41411	2024-08-04	2023-08-01	3.05	3.46	—	3.3	0.003	0.67	0.0	0.05	14.36	0.00	2.022	10.85	0.25	10.0	90.0	0.0	-2.35	0.78	0.78	2.58	3.3	0.003	0.70	0.0	0.05	15.95	0.00	2.422	8.30	2.29	9.1	90.9	0.0	-2.64	0.43	0.78	0.78	2.55	11145	1368	2	0	4	0	0	logfile
✔	8Q27	18070	2024-08-03	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.57	0.0	0.05	15.75	0.00	2.561	0.86	0.25	3.9	96.1	0.0	-1.48	1.11	0.34	0.88	7.35	7002	453	6	0	0	0	3567	logfile
✔	8K9G	36986	2024-08-06	2023-08-01	3.49	4.85	3.52	3.8	0.005	0.85	0.0	0.06	21.18	0.01	2.201	10.24	0.25	6.5	93.5	0.0	-1.99	0.77	0.60	0.80	3.8	0.003	0.66	0.0	0.04	20.97	0.00	2.384	12.69	2.04	4.7	95.3	0.0	-0.65	0.64	0.92	0.81	0.82	16759	1811	8	90	0	0	0	logfile
✔	8K9B	36983	2024-08-10	2023-07-31	4.5	3.89	4.64	3.7	0.002	0.44	0.0	0.04	8.28	0.00	1.993	3.33	0.03	2.2	97.6	0.2	1.00	0.75	0.48	—	3.6	0.010	0.70	0.0	0.04	11.83	0.01	2.413	14.25	0.00	4.3	95.5	0.2	-0.47	1.46	0.80	0.70	—	28440	3643	6	0	1	0	0	logfile
✔	8K8T	36961	2024-08-04	2023-07-31	3.8	2.70	—	3.7	0.014	0.97	0.0	0.05	18.59	0.01	2.197	15.42	2.79	4.4	95.6	0.0	0.47	0.69	0.72	1.42	2.2	0.005	0.80	0.0	0.05	19.38	0.00	2.450	14.41	5.58	5.3	94.7	0.0	0.76	0.56	0.71	0.73	1.26	9926	1210	4	0	0	0	0	logfile
✔	8K8U	36962	2024-08-05	2023-07-31	3.05	3.23	3.08	3.2	0.009	0.68	0.0	0.05	12.04	0.00	1.873	1.34	0.00	2.5	97.3	0.2	0.06	0.65	0.72	2.56	3.2	0.004	0.63	0.0	0.04	15.83	0.00	1.898	7.53	1.78	3.7	96.2	0.1	-0.02	1.41	0.72	0.79	2.53	13969	1640	6	27	4	2	0	logfile
✔	8K98	36980	2024-08-05	2023-07-31	2.9	3.17	3.02	3.2	0.003	0.58	0.0	0.04	19.22	0.00	2.179	9.35	3.15	6.0	93.8	0.2	-0.15	0.63	0.75	1.48	3.2	0.005	0.67	0.0	0.05	19.43	0.00	2.397	9.27	3.83	7.2	92.7	0.1	-0.50	0.91	0.64	0.76	1.54	13415	1619	4	0	0	0	0	logfile
✔	8K8J	36951	2024-08-03	2023-07-30	2.88	3.12	—	3.1	0.004	0.58	0.0	0.04	15.12	0.00	2.190	9.34	0.11	5.3	94.7	0.0	0.30	0.66	0.84	3.80	3.1	0.002	0.55	0.0	0.04	16.88	0.00	2.518	7.25	2.03	4.4	95.6	0.0	0.81	0.38	0.65	0.84	3.16	8155	1031	6	0	1	0	0	logfile
✔	8K8E	36948	2024-08-04	2023-07-29	2.6	3.29	2.56	3.0	0.005	0.68	0.0	0.05	16.42	0.00	2.218	8.92	1.33	5.7	94.3	0.0	0.45	0.69	0.87	2.88	3.0	0.005	0.67	0.0	0.04	15.28	0.00	2.476	5.86	2.13	5.2	94.8	0.0	1.01	0.42	0.70	0.88	3.05	10716	1324	11	0	17	0	0	logfile
✔	8K88	36947	2024-08-03	2023-07-29	2.6	2.26	2.70	2.1	0.002	0.58	0.0	0.04	20.29	0.00	1.973	7.12	0.96	2.4	97.6	0.0	1.49	0.83	0.85	3.70	2.1	0.003	0.56	0.0	0.04	20.10	0.00	1.988	6.42	1.77	2.6	97.4	0.0	1.46	0.35	0.83	0.85	3.34	6686	726	5	44	1	0	0	logfile
✔	8TMA	41382	2024-08-02	2023-07-29	3.2	3.37	3.02	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.003	0.67	0.0	0.04	15.02	0.00	2.531	4.42	3.67	5.0	95.0	0.0	-0.44	1.72	0.80	0.84	3.87	3254	410	3	0	0	0	0	logfile
✔	8K87	36946	2024-08-05	2023-07-29	2.9	3.06	2.96	3.0	0.004	0.77	0.0	0.04	20.69	0.01	1.929	14.82	2.09	3.6	96.4	0.0	0.41	0.84	0.81	1.67	3.1	0.003	0.71	0.0	0.04	20.41	0.00	1.966	9.87	3.05	3.3	96.7	0.0	0.60	0.42	0.84	0.80	1.86	13372	1452	10	88	2	0	0	logfile
✔	8Q0N	18056	2024-08-06	2023-07-28	4.2	4.02	3.99	4.1	0.002	0.48	0.0	0.04	13.78	0.00	2.181	5.46	0.00	1.7	98.3	0.0	1.28	0.56	0.43	—	3.9	0.004	0.63	0.0	0.04	14.46	0.00	2.326	7.53	0.00	5.0	95.0	0.0	0.56	1.05	0.68	0.65	—	15917	1009	4	0	2	0	7910	logfile

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