Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TLT	41372	2024-08-07	2023-07-27	2.85	3.16	2.98	3.1	0.005	0.67	0.0	0.74	17.33	0.00	2.216	4.11	0.54	4.6	95.4	0.0	0.75	0.70	0.81	3.25	3.1	0.007	1.26	0.0	0.24	17.51	0.00	2.193	4.22	2.02	4.5	95.5	0.0	0.46	1.10	0.71	0.83	3.24	18644	2387	16	26	3	437	0	logfile
✔	8TLM	41370	2024-08-03	2023-07-27	2.9	3.41	2.91	3.3	0.003	0.49	0.0	0.04	11.71	0.00	2.057	4.62	0.00	2.8	97.2	0.0	1.36	0.71	0.81	3.76	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.463	4.81	2.63	2.8	97.2	0.0	1.19	0.45	0.71	0.83	3.14	5400	696	3	0	0	0	0	logfile
✔	8TLU	41373	2024-08-04	2023-07-27	3.8	3.91	3.80	3.9	0.003	0.54	0.0	0.04	12.89	0.00	2.061	7.96	0.00	1.6	98.4	0.0	1.57	0.58	0.79	1.40	3.9	0.003	0.51	0.0	0.04	14.80	0.00	2.451	8.41	1.22	2.5	97.5	0.0	2.00	0.95	0.60	0.79	1.47	11180	698	2	0	0	0	5703	logfile
✔	8TLQ	41371	2024-08-07	2023-07-27	3.53	3.90	3.69	3.8	0.004	0.63	0.0	0.72	17.38	0.00	2.253	3.95	0.13	4.0	96.0	0.0	1.03	0.79	0.81	1.92	3.8	0.007	1.24	0.0	0.23	17.80	0.00	2.224	5.12	2.91	5.6	94.4	0.0	0.36	1.11	0.81	0.84	2.15	19219	2520	14	26	3	43	0	logfile
✔	8K7T	36941	2024-08-03	2023-07-27	3.71	3.98	3.77	4.0	0.005	0.85	5.0	0.05	18.71	0.00	2.026	12.17	0.61	6.2	93.5	0.4	0.17	0.66	0.73	1.27	3.9	0.004	0.84	0.0	0.05	16.94	0.00	2.499	11.44	3.05	6.8	92.9	0.3	-0.47	1.47	0.69	0.78	1.87	8948	1084	13	0	23	0	0	logfile
✔	8TM1	41374	2024-08-02	2023-07-27	2.79	2.95	2.77	3.0	0.003	0.67	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.003	0.61	0.0	0.04	16.33	0.00	2.515	3.85	3.05	2.7	97.3	0.0	-0.43	1.18	0.79	0.85	3.98	4536	569	4	0	0	0	0	logfile
✔	8K7U	36943	2024-08-07	2023-07-27	3.37	3.47	3.36	3.5	0.006	0.74	0.0	0.05	14.05	0.00	2.046	7.47	0.00	6.9	93.1	0.0	-2.17	0.78	0.85	3.07	3.4	0.004	0.61	0.0	0.04	16.58	0.00	2.444	3.95	2.84	5.8	94.2	0.0	-1.28	0.43	0.79	0.87	2.18	20747	2555	4	0	0	0	0	logfile
✔	8K7A	36936	2024-08-03	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.638	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.7	0.003	0.75	0.0	0.04	14.00	0.00	1.931	11.74	0.00	4.5	95.2	0.3	-0.06	0.56	0.71	0.81	—	8918	1126	4	0	4	0	0	logfile
✔	8TL0	41358	2024-08-08	2023-07-26	3.1	3.94	3.26	3.7	0.007	0.84	0.0	0.05	13.38	0.01	2.221	5.54	0.04	5.1	94.9	0.0	-1.22	0.80	0.84	2.97	3.7	0.006	0.62	0.0	0.04	14.86	0.00	2.337	6.60	1.37	4.3	95.7	0.0	0.56	0.38	0.78	0.82	2.68	23119	2920	14	21	0	0	0	logfile
✔	8PS8	17846	2024-08-07	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.63	0.0	0.04	4.23	0.00	2.532	1.62	0.00	6.9	93.1	0.0	0.14	0.65	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8K7C	36938	2024-08-04	2023-07-26	3.9	4.56	4.09	4.5	0.009	0.96	0.0	0.05	13.87	0.01	1.837	13.49	0.21	8.8	91.2	0.0	-1.19	0.66	0.84	2.01	4.5	0.003	0.63	0.0	0.04	16.50	0.00	1.931	5.91	2.36	4.9	95.1	0.0	0.62	0.45	0.61	0.80	1.53	9271	1174	4	0	6	0	0	logfile
✔	8K6K	36921	2024-08-03	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.004	1.08	0.0	0.06	17.50	0.00	1.802	6.59	1.02	4.2	95.8	0.0	0.95	0.23	0.76	0.90	4.63	8593	1088	5	0	6	0	0	logfile
✔	8K6L	36922	2024-08-02	2023-07-25	2.92	3.27	2.96	3.2	0.005	1.00	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.003	0.63	0.0	0.05	15.28	0.00	2.555	2.44	2.89	3.3	96.7	0.0	1.46	0.59	0.61	0.82	3.26	4155	547	3	0	4	0	0	logfile
✔	8K6M	36923	2024-08-04	2023-07-25	3.3	2.42	3.36	2.2	0.005	0.72	3.0	0.05	12.80	0.01	2.085	8.51	0.29	5.4	94.2	0.3	0.45	0.75	0.75	2.41	2.2	0.003	0.63	0.0	0.04	15.58	0.00	2.410	5.44	2.83	5.1	94.9	0.0	0.64	0.39	0.76	0.77	2.06	9327	1182	6	0	0	0	0	logfile
✔	8TKP	41356	2024-08-05	2023-07-25	2.9	3.69	3.00	3.2	0.005	0.91	3.0	0.05	16.84	0.01	1.152	7.90	0.94	2.1	97.9	0.0	2.30	0.59	0.61	2.02	3.3	0.003	0.76	0.0	0.04	15.78	0.00	2.217	8.04	1.47	2.0	98.0	0.0	1.88	2.00	0.64	0.82	1.63	14666	1698	14	0	54	0	0	logfile
✔	8K6J	36920	2024-08-03	2023-07-25	2.77	3.51	2.84	3.3	0.030	1.26	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.005	1.09	0.0	0.06	17.36	0.00	1.792	6.89	1.93	4.5	95.5	0.0	0.76	0.27	0.75	0.85	3.53	8580	1087	5	0	6	0	0	logfile
✔	8K69	36919	2024-08-03	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	2.4	0.002	0.55	0.0	0.04	15.82	0.00	2.289	3.96	1.78	2.9	97.1	0.0	2.61	1.12	0.74	0.89	5.36	7744	916	6	0	18	126	0	logfile
✔	8TK1	41321	2024-08-08	2023-07-25	2.98	2.28	3.01	2.0	0.003	0.54	0.0	0.04	13.82	0.00	2.031	3.43	0.08	3.9	96.1	0.0	-0.10	0.78	0.76	2.95	2.0	0.004	0.62	0.0	0.04	17.07	0.00	2.492	4.32	1.50	4.2	95.8	0.0	0.32	1.31	0.77	0.80	2.93	23424	2877	8	0	0	0	0	logfile
✔	8K6o	36925	2024-08-04	2023-07-25	3.3	2.34	3.29	3.2	0.002	0.58	0.0	0.04	12.87	0.00	2.255	6.19	0.10	1.8	98.2	0.0	2.01	0.72	0.65	2.18	2.2	0.003	0.63	0.0	0.04	15.83	0.00	2.527	6.62	1.66	2.7	97.3	0.0	1.57	0.74	0.75	0.76	2.25	9333	1183	6	0	0	0	0	logfile
✔	8TKo	41355	2024-08-05	2023-07-25	3.05	3.87	3.11	3.5	0.002	0.48	0.0	0.04	14.07	0.00	2.204	6.16	1.25	4.7	95.3	0.1	0.81	0.88	0.86	2.50	3.5	0.003	0.52	0.0	0.04	14.45	0.00	2.616	4.85	1.53	5.2	94.8	0.1	1.01	3.79	0.89	0.88	2.65	14282	1903	3	0	0	0	0	logfile

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