Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VUS	43538	2024-09-30	2024-01-29	3.99	4.28	4.05	4.1	0.004	0.67	0.0	0.04	16.76	0.00	2.100	12.56	0.34	13.2	86.4	0.4	-2.35	0.82	0.81	1.49	4.1	0.005	0.74	0.0	0.05	17.07	0.00	2.377	9.86	5.72	14.0	85.6	0.4	-2.15	0.31	0.82	0.81	1.39	25006	3475	8	0	0	0	0	logfile
✔	8Y3R	38896	2024-09-27	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.006	0.90	2.0	0.05	15.86	0.01	2.207	7.75	3.01	4.7	95.2	0.1	-0.90	0.62	0.72	0.76	1.88	15735	2001	9	0	0	0	0	logfile
✔	8VUL	43532	2024-09-24	2024-01-29	3.83	4.04	6.77	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.003	0.67	0.0	0.04	17.25	0.00	2.429	5.94	4.50	9.3	90.4	0.3	-1.52	0.30	0.74	0.82	1.89	7158	963	4	0	0	0	0	logfile
✔	8Y3P	38894	2024-09-27	2024-01-29	3.48	3.68	3.58	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	3.7	0.003	0.60	0.0	0.04	15.48	0.00	2.535	9.15	1.71	5.5	94.5	0.0	-1.17	0.36	0.72	0.84	2.42	17028	2163	9	0	0	0	0	logfile
✔	8RTT	19496	2024-09-28	2024-01-29	3.56	3.72	3.51	3.6	0.004	0.52	0.0	0.04	16.49	0.00	1.740	5.80	0.20	2.2	97.8	0.0	0.18	0.79	0.85	1.76	3.6	0.003	0.58	0.0	0.04	16.85	0.00	1.965	6.38	2.10	2.5	97.5	0.0	1.11	0.38	0.79	0.86	1.89	18155	2274	16	0	14	0	0	logfile
✔	8VUR	43537	2024-09-30	2024-01-29	3.84	4.14	3.91	4.1	0.003	0.60	0.0	0.04	16.37	0.00	2.140	8.53	0.42	11.6	88.0	0.4	-1.26	0.75	0.81	1.36	4.1	0.003	0.61	0.0	0.04	16.62	0.00	2.491	6.14	5.89	10.8	88.9	0.3	-0.86	0.90	0.75	0.83	0.95	24978	3587	6	0	0	0	0	logfile
✔	8VUV	43541	2024-09-24	2024-01-29	3.69	3.94	3.73	3.9	0.003	0.63	0.0	0.04	17.33	0.00	2.159	8.86	0.11	7.7	92.1	0.2	-1.24	0.68	0.74	1.50	3.9	0.005	0.69	0.0	0.05	17.67	0.00	2.542	7.07	5.09	9.1	90.7	0.2	-1.32	0.32	0.68	0.74	1.53	8586	1154	4	0	0	0	0	logfile
✔	8RU0	19501	2024-09-26	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.002	0.55	0.0	0.04	16.27	0.00	2.026	4.89	2.41	2.6	97.3	0.1	0.61	1.31	0.64	0.83	2.24	11660	1476	8	0	11	0	0	logfile
✔	8Y3M	38889	2024-09-27	2024-01-29	3.25	2.64	—	3.2	0.007	1.17	0.0	0.06	11.37	0.01	2.299	4.87	0.11	11.1	88.3	0.6	-5.56	0.67	0.56	1.24	3.3	0.004	0.74	0.0	0.04	15.11	0.00	2.352	8.63	1.40	9.7	90.0	0.4	-1.51	1.94	0.77	0.75	1.87	16793	2017	3	0	0	0	0	logfile
✔	8Y3o	38893	2024-09-27	2024-01-29	2.75	3.08	2.94	3.1	0.003	0.75	0.0	0.05	13.07	0.01	2.217	6.58	0.00	4.1	95.9	0.0	-1.28	0.64	0.76	3.15	3.1	0.008	0.75	0.0	0.05	16.11	0.01	2.453	10.90	2.51	5.5	94.5	0.0	-1.44	0.38	0.62	0.78	3.23	17058	2163	9	0	0	0	0	logfile
✔	8RU2	19503	2024-09-27	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.67	0.0	0.04	18.27	0.00	1.962	10.87	3.36	4.3	95.6	0.1	-0.23	1.33	0.72	0.76	0.89	14773	1849	8	0	6	0	0	logfile
✔	8VUH	43530	2024-09-30	2024-01-29	4.42	4.85	4.53	4.4	0.010	0.73	0.0	0.04	13.20	0.01	2.020	19.56	0.05	13.0	86.7	0.3	-1.76	0.62	0.47	—	4.4	0.004	0.71	0.0	0.04	13.01	0.00	2.327	16.47	0.05	11.9	87.8	0.3	-1.63	0.95	0.66	0.66	—	25161	3587	8	0	0	0	0	logfile
✔	8RT7	19481	2024-09-25	2024-01-25	2.93	4.03	2.97	3.2	0.009	0.75	1.0	0.05	13.72	0.01	2.051	8.94	0.07	2.5	97.5	0.0	-0.67	0.72	0.75	3.20	3.3	0.005	0.83	0.0	0.05	14.93	0.00	2.363	10.51	1.08	2.5	97.5	0.0	0.15	1.25	0.79	0.89	2.45	55802	7184	46	0	0	0	0	logfile
✔	8RT9	19483	2024-09-28	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.004	0.69	0.0	0.04	16.54	0.00	2.363	9.76	1.93	1.7	98.3	0.0	2.96	0.71	0.69	0.87	2.61	17866	2395	10	0	0	0	0	logfile
✔	8RTB	19485	2024-09-26	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.006	0.88	0.0	0.05	16.06	0.01	2.396	18.43	2.33	5.1	94.9	0.0	-0.38	1.75	0.70	0.85	1.12	14132	1804	9	0	0	0	0	logfile
✔	8Y2C	38850	2024-09-23	2024-01-25	3.16	3.42	3.25	3.5	0.003	0.51	0.0	0.04	19.03	0.00	2.160	5.35	0.00	4.2	95.8	0.0	0.76	0.55	0.83	1.39	3.5	0.002	0.48	0.0	0.04	17.73	0.00	2.626	3.45	4.28	3.6	96.4	0.0	1.17	0.17	0.55	0.83	0.89	4207	529	2	0	2	0	0	logfile
✔	8RT5	19479	2024-09-27	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.006	1.00	0.0	0.06	16.09	0.00	2.462	14.19	1.21	0.4	99.6	0.0	0.15	3.13	0.89	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8Y2D	38851	2024-09-23	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.003	0.52	0.0	0.04	16.94	0.00	2.223	1.79	2.48	4.0	96.0	0.0	1.04	0.23	0.60	0.86	2.03	4189	528	2	0	4	4	0	logfile
✔	8VT2	43516	2024-09-25	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.004	0.60	0.0	0.05	14.23	0.00	2.520	3.97	1.03	5.5	94.5	0.0	0.03	0.28	0.65	0.81	3.29	10674	1362	12	0	18	0	0	logfile
✔	8RT6	19480	2024-09-25	2024-01-25	3.18	4.21	3.30	3.5	0.011	0.80	0.0	0.05	13.56	0.01	2.066	9.74	0.07	3.0	97.0	0.0	-0.79	0.69	0.72	2.59	3.5	0.004	0.72	0.0	0.04	14.73	0.00	2.287	8.79	1.13	2.0	98.0	0.0	0.45	0.64	0.78	0.88	2.07	55802	7184	46	0	0	0	0	logfile

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