Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VT2	43516	2024-09-25	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.004	0.60	0.0	0.05	14.23	0.00	2.520	3.97	1.03	5.5	94.5	0.0	0.03	0.28	0.65	0.81	3.29	10674	1362	12	0	18	0	0	logfile
✔	8VSP	43501	2024-09-25	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.029	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.56	0.0	0.04	14.00	0.00	2.580	5.40	2.38	3.2	96.8	0.0	2.19	0.55	0.77	0.79	3.05	11388	1476	12	0	3	0	0	logfile
✔	8VSU	43506	2024-09-27	2024-01-24	2.86	3.11	2.98	3.2	0.013	1.76	0.0	0.09	12.49	0.01	2.529	0.13	0.12	1.8	98.2	0.0	-1.20	0.70	0.85	4.70	3.2	0.004	0.92	0.0	0.04	15.92	0.00	2.322	1.71	0.84	2.1	97.9	0.0	1.62	1.83	0.64	0.86	3.53	15240	941	4	0	1	0	7646	logfile
✔	8VSB	43492	2024-09-24	2024-01-23	2.93	3.23	2.99	3.2	0.009	0.95	0.0	0.05	12.83	0.01	2.198	5.48	0.00	7.7	92.3	0.0	-2.77	0.71	0.82	4.21	3.2	0.002	0.63	0.0	0.04	15.72	0.00	2.546	3.34	2.17	4.0	96.0	0.0	-1.61	0.78	0.65	0.81	3.23	7519	969	3	0	0	0	0	logfile
✔	8RRR	19462	2024-09-23	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile
✔	8VS6	43489	2024-09-26	2024-01-23	2.73	2.90	2.73	2.9	0.004	0.74	0.0	0.05	16.49	0.00	1.899	1.66	1.65	3.2	96.8	0.0	-0.31	0.72	0.79	3.25	2.9	0.003	0.59	0.0	0.05	15.99	0.00	1.850	3.72	2.70	4.0	96.0	0.0	-0.75	0.37	0.71	0.79	3.05	12453	800	10	0	23	0	6015	logfile
✔	8VSD	43494	2024-09-27	2024-01-23	3.2	3.33	—	3.3	0.005	0.72	0.0	0.05	13.63	0.00	1.833	7.10	0.00	4.8	95.2	0.0	-1.79	0.72	0.81	2.95	3.3	0.003	0.57	0.0	0.04	14.37	0.00	1.937	4.54	1.55	4.1	95.9	0.0	-1.15	0.34	0.73	0.83	2.36	16276	2109	12	0	23	0	0	logfile
✔	8Y16	38826	2024-09-24	2024-01-23	2.98	4.25	3.28	3.0	0.004	0.68	1.0	0.06	14.69	0.01	2.088	7.41	0.12	5.8	93.9	0.4	-0.19	0.71	0.47	1.89	3.0	0.003	0.67	0.0	0.04	14.69	0.00	2.026	6.58	0.78	5.1	94.8	0.1	-0.20	0.99	0.84	0.81	1.87	39510	4820	31	0	84	0	0	logfile
✔	8Y0Y	38823	2024-09-24	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile
✔	8VSC	43493	2024-09-28	2024-01-23	3.0	3.24	3.00	3.2	0.004	0.73	0.0	0.04	14.82	0.01	2.169	4.09	0.42	2.9	97.1	0.0	-1.07	0.64	0.76	3.33	3.2	0.003	0.59	0.0	0.04	15.63	0.00	2.394	5.34	1.98	4.3	95.7	0.0	-1.14	0.94	0.64	0.78	2.69	17630	1139	3	0	0	0	8786	logfile
✔	8VRW	43488	2024-09-25	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.030	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.003	0.66	0.0	0.04	13.86	0.01	2.384	11.75	2.52	4.1	95.9	0.0	-0.83	1.14	0.67	0.67	2.26	10413	1272	9	0	0	0	0	logfile
✔	8XZD	38793	2024-09-25	2024-01-21	3.47	2.63	3.52	2.8	0.018	1.68	10.0	0.15	16.41	0.01	2.052	12.09	5.31	3.0	96.8	0.1	2.42	0.80	0.75	2.60	2.2	0.003	0.67	0.0	0.04	17.36	0.00	2.348	7.16	2.73	3.0	97.0	0.0	1.33	1.14	0.78	0.81	3.06	6436	791	3	0	1	0	0	logfile
✔	8XZJ	38798	2024-09-24	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.005	0.71	0.0	0.05	15.03	0.00	2.540	8.03	1.81	2.4	97.5	0.1	1.00	1.18	0.74	0.80	3.40	9106	1162	6	0	0	0	0	logfile
✔	8XZF	38794	2024-09-24	2024-01-21	3.0	2.18	—	2.9	0.007	0.72	1.0	0.05	12.98	0.00	2.091	9.31	0.51	4.3	95.5	0.2	-2.36	0.79	0.81	4.27	2.9	0.004	0.62	0.0	0.04	15.68	0.00	2.444	6.97	2.55	3.5	96.4	0.1	0.30	0.52	0.80	0.83	3.29	9062	1161	7	0	1	0	0	logfile
✔	8XZG	38795	2024-09-24	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	3.6	0.003	0.57	0.0	0.04	15.96	0.00	2.428	4.14	2.85	2.9	97.1	0.0	0.14	0.43	0.57	0.76	1.51	7172	919	5	0	0	0	0	logfile
✔	8XZB	38792	2024-09-25	2024-01-21	3.12	4.44	3.15	3.8	0.007	1.64	8.0	0.13	17.47	0.01	1.941	19.64	4.45	1.7	97.8	0.5	2.75	0.82	0.70	2.45	3.8	0.003	0.67	0.0	0.04	17.19	0.00	2.500	6.63	0.43	2.7	97.3	0.0	1.94	1.25	0.89	0.85	2.16	6412	787	3	0	1	0	0	logfile
✔	8XZH	38796	2024-09-24	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.003	0.58	0.0	0.04	16.37	0.00	2.457	5.52	2.24	2.5	97.5	0.0	1.14	0.48	0.77	0.85	4.08	9048	1159	6	0	0	0	0	logfile
✔	8XYZ	38784	2024-09-25	2024-01-20	2.96	2.61	3.07	2.2	0.006	1.02	2.0	0.07	19.01	0.01	2.056	12.35	1.86	1.9	97.8	0.3	0.97	0.81	0.78	2.79	2.4	0.003	0.64	0.0	0.04	19.27	0.00	2.069	5.74	3.01	3.0	97.0	0.0	1.26	0.86	0.80	0.84	2.81	6429	791	3	0	1	0	0	logfile
✔	8XXW	38763	2024-09-24	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.003	0.55	0.0	0.04	16.40	0.00	2.397	5.17	1.33	2.1	97.9	0.0	1.49	0.41	0.79	0.81	2.41	7723	950	6	0	4	0	0	logfile
✔	8XXM	38753	2024-09-29	2024-01-18	3.2	3.17	3.15	3.1	0.005	0.89	0.0	0.05	22.16	0.01	2.081	6.64	0.02	7.2	92.6	0.2	-2.18	0.85	0.83	2.41	3.1	0.003	0.65	0.0	0.04	22.30	0.00	1.973	9.37	2.14	6.8	93.0	0.1	-0.94	0.37	0.88	0.88	1.90	76934	5062	42	1723	26	0	0	logfile

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