Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XXL	38752	2024-09-29	2024-01-18	2.9	2.97	2.92	2.9	0.005	0.82	0.0	0.05	21.86	0.01	2.070	5.84	0.58	6.2	93.4	0.4	-2.86	0.85	0.84	3.18	2.9	0.006	0.72	0.0	0.04	22.17	0.01	1.922	7.73	2.60	6.9	92.9	0.2	-0.72	0.38	0.87	0.87	2.79	76240	4975	41	1723	25	0	0	logfile
✔	8VQ9	43435	2024-09-25	2024-01-18	2.7	2.88	2.71	2.9	0.010	1.20	0.0	0.08	9.90	0.00	2.511	0.94	0.00	2.9	97.1	0.0	0.54	0.66	0.75	4.36	2.9	0.003	0.55	0.0	0.04	14.13	0.00	2.600	3.47	0.95	1.7	98.3	0.0	2.02	1.11	0.73	0.83	3.53	9513	1278	15	0	27	0	0	logfile
✔	8VQA	43436	2024-09-25	2024-01-18	3.5	3.83	3.41	3.9	0.011	1.34	0.0	0.09	9.89	0.00	2.443	0.78	0.77	2.6	96.7	0.7	0.07	0.62	0.70	3.56	3.9	0.003	0.61	0.0	0.04	12.83	0.00	2.629	3.17	0.64	3.5	96.5	0.0	0.69	1.16	0.71	0.78	3.32	9495	1290	18	0	30	0	0	logfile
✔	8XXM	38753	2024-09-29	2024-01-18	3.2	3.17	3.15	3.1	0.005	0.89	0.0	0.05	22.16	0.01	2.081	6.64	0.02	7.2	92.6	0.2	-2.18	0.85	0.83	2.41	3.1	0.003	0.65	0.0	0.04	22.30	0.00	1.973	9.37	2.14	6.8	93.0	0.1	-0.94	0.37	0.88	0.88	1.90	76934	5062	42	1723	26	0	0	logfile
✔	8XXQ	38758	2024-09-27	2024-01-18	2.75	3.85	2.87	3.4	0.002	0.48	0.0	0.04	8.14	0.00	2.142	4.76	0.43	1.9	98.0	0.1	-0.18	0.89	0.82	2.98	3.4	0.004	0.68	0.0	0.05	12.80	0.00	2.569	7.54	1.34	3.1	96.9	0.0	1.32	1.03	0.88	0.86	2.96	15172	1996	4	0	0	0	0	logfile
✔	8RQ4	19433	2024-09-25	2024-01-17	3.45	3.84	3.57	3.8	0.007	0.72	0.0	0.05	18.58	0.00	2.209	11.02	0.64	4.5	95.5	0.0	1.28	0.61	0.78	1.01	3.8	0.003	0.60	0.0	0.04	18.48	0.00	2.516	8.15	3.71	3.9	96.1	0.0	1.88	0.75	0.64	0.84	1.09	11210	1402	2	0	3	0	0	logfile
✔	8RQ3	19431	2024-09-25	2024-01-17	3.21	3.47	3.25	3.5	0.009	0.81	0.0	0.05	14.58	0.00	2.149	9.58	0.00	6.2	93.8	0.0	-0.39	0.61	0.85	2.21	3.5	0.003	0.58	0.0	0.04	16.43	0.00	2.521	5.42	1.81	4.2	95.8	0.0	1.69	0.73	0.54	0.82	1.16	11375	1432	1	0	0	0	0	logfile
✔	8VPP	43412	2024-09-25	2024-01-16	2.9	3.20	2.97	3.2	0.004	0.65	0.0	0.14	19.24	0.01	1.832	47.41	4.30	4.9	94.8	0.3	0.42	0.54	0.81	2.12	3.2	0.004	1.03	1.0	0.07	18.96	0.00	2.166	9.66	3.06	3.8	96.0	0.2	0.97	1.36	0.59	0.84	2.50	9930	1264	3	0	1	2	0	logfile
✔	8XVi	38705	2024-09-24	2024-01-15	3.32	2.33	3.41	2.2	0.004	0.62	0.0	0.04	16.87	0.00	2.200	9.83	0.43	5.0	95.0	0.0	-0.52	0.73	0.72	0.95	2.2	0.004	0.63	0.0	0.04	17.20	0.00	2.527	7.78	4.05	5.4	94.6	0.0	0.09	0.26	0.72	0.71	0.63	8587	1084	6	0	0	0	0	logfile
✔	8XW4	38730	2024-09-23	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✔	8XW1	38727	2024-09-23	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.70	0.0	0.04	14.05	0.00	2.321	11.29	0.00	5.6	94.4	0.0	0.84	1.08	0.57	0.81	—	5082	634	1	0	0	0	0	logfile
✔	8XVX	38721	2024-09-25	2024-01-15	3.32	3.60	3.32	3.6	0.007	0.76	0.0	0.05	14.52	0.01	2.136	11.14	0.00	10.0	90.0	0.0	-0.50	0.66	0.81	2.26	3.5	0.003	0.62	0.0	0.04	16.47	0.01	2.572	5.97	2.23	7.8	92.2	0.0	0.63	0.36	0.64	0.80	1.27	11110	1392	2	0	0	0	0	logfile
✔	8XVY	38723	2024-09-25	2024-01-15	3.71	3.97	3.78	3.9	0.004	0.81	0.0	0.05	14.04	0.01	2.128	15.85	0.17	9.8	90.2	0.0	-0.57	0.64	0.80	1.49	3.9	0.003	0.76	0.0	0.04	16.36	0.00	2.504	11.60	2.79	7.9	92.1	0.0	0.38	0.56	0.64	0.79	1.19	10923	1361	2	0	0	0	0	logfile
✔	8XVV	38720	2024-09-26	2024-01-15	3.2	3.11	3.21	3.2	0.002	0.52	0.0	0.14	13.99	0.00	2.084	5.54	0.25	3.7	96.3	0.0	-1.78	0.55	0.54	0.83	3.2	0.003	0.59	0.0	0.04	15.76	0.00	2.325	6.40	1.13	5.0	95.0	0.0	0.56	1.67	0.70	0.81	1.58	59257	3651	3	0	1	0	29886	logfile
✔	8XVH	38704	2024-09-24	2024-01-15	3.26	2.34	3.37	2.1	0.002	0.57	0.0	0.04	15.34	0.00	2.140	6.39	0.21	2.3	97.7	0.0	-0.56	0.74	0.73	1.62	2.1	0.003	0.66	0.0	0.04	16.17	0.00	2.493	6.62	3.74	2.6	97.4	0.0	0.54	0.40	0.73	0.73	1.70	8544	1080	6	0	0	0	0	logfile
✔	8XVZ	38724	2024-09-24	2024-01-15	3.78	3.95	3.77	3.8	0.011	1.05	0.0	0.05	13.53	0.01	1.969	17.84	0.00	16.2	83.5	0.3	-2.09	0.67	0.81	2.88	3.8	0.003	0.82	0.0	0.04	15.94	0.01	2.449	10.95	2.55	12.0	87.6	0.3	-0.55	1.16	0.64	0.78	1.67	8690	1223	2	0	0	0	0	logfile
✔	8XW2	38728	2024-09-25	2024-01-15	3.59	3.94	3.75	3.9	0.005	0.76	0.0	0.05	13.68	0.01	2.169	11.00	0.00	5.2	94.8	0.0	0.69	0.65	0.81	2.45	3.9	0.003	0.70	0.0	0.04	16.08	0.00	2.326	8.10	0.85	4.0	96.0	0.0	1.14	0.47	0.65	0.81	1.73	10150	1268	2	0	0	0	0	logfile
✔	8XVE	38702	2024-09-24	2024-01-15	3.0	2.32	3.07	2.1	0.004	0.63	0.0	0.04	16.63	0.01	2.050	7.99	0.65	2.0	98.0	0.0	0.79	0.77	0.78	2.64	2.1	0.004	0.66	0.0	0.04	17.68	0.00	2.446	6.40	4.73	2.6	97.4	0.0	1.06	0.43	0.77	0.79	2.17	8524	1078	6	0	0	0	0	logfile
✔	8XW0	38725	2024-09-25	2024-01-15	3.11	3.37	2.97	3.4	0.005	0.91	0.0	0.05	19.55	0.01	2.126	10.61	0.83	9.7	90.3	0.0	-0.53	0.60	0.81	2.07	3.4	0.003	0.62	0.0	0.04	17.70	0.00	2.398	7.39	1.41	7.8	92.2	0.0	0.43	1.55	0.65	0.84	1.50	11320	1392	4	0	4	0	0	logfile
✔	8XW3	38729	2024-09-25	2024-01-15	3.63	3.91	3.69	3.9	0.005	0.73	0.0	0.04	13.29	0.00	2.085	8.25	0.00	4.6	95.4	0.0	1.53	0.66	0.83	2.11	3.9	0.003	0.65	0.0	0.04	15.42	0.00	2.536	6.97	1.70	3.5	96.5	0.0	1.74	1.15	0.65	0.82	1.94	10150	1268	2	0	0	0	0	logfile

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