Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XoA	38524	2024-09-23	2023-12-31	3.03	3.24	3.01	3.3	0.007	1.00	1.0	0.06	11.52	0.01	2.346	6.05	0.00	1.3	98.7	0.0	0.90	0.57	0.77	2.21	3.3	0.003	0.66	0.0	0.04	13.69	0.01	2.577	5.86	1.45	2.4	97.6	0.0	2.17	0.32	0.55	0.78	1.69	2713	376	2	0	1	0	0	logfile
✔	8XoB	38525	2024-09-23	2023-12-31	3.15	3.40	3.18	3.4	0.005	0.80	0.0	0.04	12.87	0.01	2.358	3.44	0.00	4.2	95.8	0.0	-1.77	0.62	0.83	2.37	3.4	0.005	0.74	0.0	0.04	14.62	0.01	2.539	2.41	1.67	4.4	95.6	0.0	1.72	0.29	0.58	0.83	1.55	2858	387	1	0	0	0	0	logfile
✔	8RKT	19282	2024-09-26	2023-12-30	2.35	2.45	2.50	2.5	0.006	0.96	0.0	0.07	22.00	0.01	2.046	3.02	0.00	1.9	98.1	0.0	-0.24	0.63	0.85	5.74	2.6	0.006	0.73	0.0	0.05	23.23	0.01	1.857	5.87	0.81	1.1	98.9	0.0	1.76	1.08	0.65	0.88	4.74	13794	853	14	312	3	323	0	logfile
✔	8XNG	38503	2024-09-25	2023-12-29	3.56	3.95	3.59	3.8	0.008	0.89	0.0	0.05	14.28	0.01	2.146	17.51	0.00	10.2	89.8	0.0	-1.58	0.60	0.75	1.94	3.8	0.003	0.72	0.0	0.04	16.64	0.00	2.534	10.90	2.09	6.0	94.0	0.0	0.21	1.18	0.59	0.73	1.85	10922	1366	2	0	0	0	0	logfile
✔	8XN4	38497	2024-09-28	2023-12-29	2.34	2.61	2.44	2.2	0.005	0.81	1.0	0.05	18.21	0.01	2.200	11.08	3.23	2.5	97.4	0.1	1.34	0.86	0.87	3.46	2.2	0.003	0.70	0.0	0.04	18.14	0.00	2.493	8.42	3.47	2.2	97.8	0.0	1.90	0.43	0.86	0.87	2.91	19173	2506	14	0	0	0	0	logfile
✔	8XMT	38488	2024-09-30	2023-12-28	3.31	2.36	3.26	2.2	0.004	0.64	1.0	0.05	13.24	0.01	2.202	10.21	0.11	4.0	95.7	0.3	0.46	0.68	0.72	2.73	2.1	0.005	0.65	0.0	0.05	15.46	0.00	2.514	7.70	3.07	4.9	95.0	0.0	0.07	0.63	0.78	0.80	2.85	24217	3045	6	0	27	0	0	logfile
✔	8XN3	38496	2024-09-25	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.003	0.73	0.0	0.05	16.82	0.01	2.349	11.65	2.73	4.1	95.9	0.0	0.60	0.72	0.73	0.72	2.46	6505	791	3	0	7	0	0	logfile
✔	8XN2	38495	2024-09-25	2023-12-28	2.79	2.29	2.72	2.9	0.004	0.63	0.0	0.06	14.75	0.01	2.206	7.92	0.00	3.3	96.7	0.0	1.32	0.63	0.64	1.62	3.0	0.003	0.72	0.0	0.04	16.52	0.00	2.295	9.65	1.44	3.3	96.7	0.0	0.92	0.72	0.74	0.75	1.53	6527	791	4	0	9	0	0	logfile
✔	8XMG	38476	2024-09-30	2023-12-27	2.9	2.26	2.89	2.0	0.004	0.61	0.0	0.06	12.81	0.01	2.216	6.94	0.11	3.7	96.3	0.0	0.23	0.78	0.79	3.45	2.0	0.005	0.66	0.0	0.05	15.70	0.00	2.220	7.27	2.83	3.7	96.3	0.0	0.30	1.02	0.78	0.81	3.12	24476	3062	6	0	38	0	0	logfile
✔	8XM5	38463	2024-09-30	2023-12-27	2.61	2.22	2.60	2.1	0.004	0.64	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.003	0.62	0.0	0.05	15.90	0.00	2.406	7.09	2.25	4.2	95.8	0.0	0.35	1.29	0.78	0.80	3.03	24226	3047	6	0	27	0	0	logfile
✔	8XM7	38466	2024-09-28	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.004	0.77	0.0	0.05	14.79	0.01	1.989	22.88	0.00	7.1	92.9	0.0	-1.31	0.57	0.86	0.79	—	17190	2123	4	0	2	0	0	logfile
✔	8XLN	38454	2024-09-25	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.002	0.60	0.0	0.04	16.27	0.00	2.495	4.82	1.01	5.2	94.8	0.0	0.55	0.38	0.79	0.82	1.37	6593	789	8	0	15	0	0	logfile
✔	8RK4	19259	2024-09-24	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.920	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.65	0.0	0.04	11.91	0.00	2.570	9.10	0.00	4.0	95.7	0.3	-0.96	0.95	0.94	0.72	—	8373	1119	3	0	0	0	0	logfile
✔	8RK8	19264	2024-09-25	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.476	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.13	0.0	0.05	16.96	0.01	2.284	25.27	5.13	4.3	95.7	0.0	-0.52	1.27	0.78	0.84	1.16	11226	1512	6	0	0	0	0	logfile
✔	8XKi	38418	2024-09-30	2023-12-23	3.2	3.40	3.22	3.4	0.004	0.58	0.0	0.05	19.04	0.00	2.156	6.18	0.30	5.8	94.1	0.1	-2.04	0.75	0.82	2.39	3.3	0.004	0.72	1.0	0.05	16.88	0.00	1.931	4.40	3.05	4.7	95.2	0.1	-1.15	1.02	0.77	0.88	2.20	24431	3121	13	0	32	0	0	logfile
✔	8RK9	19265	2024-09-23	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.8	0.003	0.77	0.0	0.05	16.84	0.01	2.538	15.49	3.53	7.1	92.9	0.0	-3.47	4.08	0.30	0.09	0.60	6138	816	6	0	0	0	0	logfile
✔	8RKB	19267	2024-09-24	2023-12-23	3.12	2.74	3.26	3.0	0.003	0.50	0.0	0.03	13.64	0.00	0.214	21.59	0.00	4.5	95.4	0.2	2.03	0.65	0.68	0.98	3.0	0.003	0.62	0.0	0.04	16.87	0.00	2.523	6.10	2.20	4.0	95.8	0.2	1.83	0.94	0.77	0.85	2.46	50484	6504	24	0	0	0	0	logfile
✔	8RKA	19266	2024-09-24	2023-12-23	3.12	3.09	3.24	3.1	0.002	0.49	0.0	0.04	13.37	0.00	2.094	8.66	0.00	4.5	95.5	0.0	2.40	0.74	0.69	0.79	3.0	0.003	0.59	0.0	0.04	16.66	0.00	2.374	6.28	2.20	4.3	95.7	0.0	2.23	1.29	0.83	0.86	2.35	50484	6504	24	0	0	0	0	logfile
✔	8VG0	43196	2024-09-26	2023-12-22	3.07	3.70	3.12	3.5	0.005	0.71	0.0	0.04	27.18	0.00	2.082	1.11	0.00	0.9	99.1	0.0	2.77	0.80	0.82	2.89	3.5	0.005	0.59	0.0	0.03	27.96	0.00	2.541	5.36	1.46	1.7	98.3	0.0	3.11	0.29	0.83	0.85	2.38	13042	823	12	318	1	0	0	logfile
✔	8VFZ	43195	2024-09-27	2023-12-22	4.1	4.63	4.39	4.2	0.005	0.68	0.0	0.04	25.93	0.01	2.063	1.78	1.20	2.0	97.7	0.3	3.06	0.82	0.78	—	4.2	0.008	0.86	0.0	0.05	27.59	0.01	2.337	24.55	0.00	4.5	95.3	0.2	0.35	2.79	0.84	0.83	—	14906	984	12	342	0	0	0	logfile

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