Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VG1	43197	2024-09-26	2023-12-22	2.48	3.12	2.46	2.9	0.005	0.68	0.0	0.04	26.21	0.00	2.351	0.69	0.51	1.3	98.6	0.1	2.20	0.82	0.85	3.37	2.9	0.005	0.61	0.0	0.04	27.92	0.00	2.435	4.68	1.91	1.8	98.1	0.1	2.38	0.30	0.82	0.85	3.17	14434	930	13	342	1	0	0	logfile
✔	8VFV	43190	2024-09-29	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.20	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.004	0.90	1.0	0.04	14.07	0.00	1.985	8.21	2.75	3.5	96.4	0.0	0.33	0.49	0.71	0.86	3.28	21240	2607	29	0	72	0	0	logfile
✔	8VFY	43194	2024-09-26	2023-12-22	2.89	3.58	2.87	3.2	0.005	0.68	0.0	0.04	26.42	0.00	2.203	1.42	0.27	1.7	98.1	0.1	2.05	0.88	0.85	2.26	3.2	0.004	0.65	0.0	0.03	28.08	0.00	2.400	7.36	1.62	2.1	97.8	0.1	2.28	1.41	0.88	0.85	1.74	14046	881	11	342	0	0	0	logfile
✔	8VFX	43193	2024-09-27	2023-12-22	2.65	3.26	2.73	3.1	0.005	0.64	0.0	0.04	24.47	0.00	2.067	1.29	0.39	1.8	98.2	0.0	2.04	0.80	0.83	4.19	3.1	0.004	0.61	0.0	0.04	26.77	0.00	2.507	5.11	2.22	1.8	98.2	0.0	2.06	0.42	0.84	0.87	3.45	16124	1222	12	316	0	0	0	logfile
✔	8VG0	43196	2024-09-26	2023-12-22	3.07	3.70	3.12	3.5	0.005	0.71	0.0	0.04	27.18	0.00	2.082	1.11	0.00	0.9	99.1	0.0	2.77	0.80	0.82	2.89	3.5	0.005	0.59	0.0	0.03	27.96	0.00	2.541	5.36	1.46	1.7	98.3	0.0	3.11	0.29	0.83	0.85	2.38	13042	823	12	318	1	0	0	logfile
✔	8RK0	19254	2024-09-24	2023-12-22	3.38	4.52	3.57	4.1	0.005	0.92	0.0	0.06	23.31	0.01	2.111	16.47	0.14	12.9	87.1	0.0	-2.41	0.73	0.81	1.31	4.1	0.003	0.83	0.0	0.05	14.18	0.01	2.272	11.92	5.10	12.7	87.3	0.0	-2.24	0.40	0.73	0.81	1.22	6940	812	24	0	46	0	0	logfile
✔	8XJL	38400	2024-09-24	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.002	0.54	0.0	0.04	14.58	0.00	2.382	5.14	1.69	1.6	98.4	0.0	2.17	0.59	0.67	0.79	2.95	8846	1140	6	0	1	0	0	logfile
✔	8RJJ	19243	2024-09-24	2023-12-21	3.55	4.74	3.73	4.2	0.005	0.88	0.0	0.06	22.55	0.00	2.086	18.05	0.24	12.0	88.0	0.0	-1.62	0.74	0.81	1.22	4.2	0.003	0.79	0.0	0.05	14.69	0.00	2.280	13.43	3.85	11.9	88.1	0.0	-1.28	0.90	0.74	0.81	1.47	8672	1078	24	0	46	0	0	logfile
✔	8XJM	38401	2024-09-24	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.54	0.0	0.04	14.74	0.00	2.440	5.71	2.22	1.6	98.4	0.0	2.22	0.53	0.68	0.83	3.80	8849	1140	6	0	1	0	0	logfile
✔	8XJ6	38394	2024-09-29	2023-12-20	3.32	3.84	3.59	3.7	0.005	0.75	0.0	0.05	14.55	0.00	2.196	12.87	0.40	3.7	95.8	0.5	-0.25	0.76	0.78	1.67	3.7	0.005	0.71	0.0	0.05	15.22	0.00	2.378	11.41	1.66	4.3	95.4	0.3	-0.32	1.23	0.77	0.81	1.61	22688	2807	12	0	8	0	0	logfile
✔	8XJ7	38395	2024-09-28	2023-12-20	2.74	3.10	2.92	3.0	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.003	0.60	0.0	0.04	16.71	0.00	2.036	6.45	2.06	5.2	94.5	0.3	-0.32	0.33	0.74	0.84	3.07	19595	2420	13	6	9	0	0	logfile
✔	8XJ4	38393	2024-09-23	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.70	0.0	0.04	18.40	0.01	2.424	4.08	1.10	3.3	96.7	0.0	1.50	1.18	0.70	0.79	2.64	5820	693	6	0	12	0	0	logfile
✔	8XiU	38390	2024-09-23	2023-12-20	4.0	4.13	4.19	4.1	0.002	0.55	0.0	0.04	10.64	0.00	2.357	6.37	1.08	1.5	98.5	0.0	2.65	0.48	0.70	—	4.1	0.003	0.79	0.0	0.04	15.54	0.01	2.534	12.17	6.45	2.4	97.6	0.0	1.63	0.52	0.50	0.71	—	2615	348	1	0	0	0	0	logfile
✔	8VES	43173	2024-09-26	2023-12-20	3.22	3.49	3.36	3.5	0.003	0.38	0.0	0.03	13.07	0.00	2.158	4.47	0.00	1.4	98.6	0.0	2.34	0.76	0.85	1.92	3.5	0.003	0.50	0.0	0.03	16.32	0.00	2.552	5.28	1.01	1.5	98.5	0.0	3.20	1.60	0.73	0.83	1.37	14303	1714	9	19	0	2	0	logfile
✔	8XJ8	38396	2024-09-27	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.002	0.60	0.0	0.04	17.71	0.00	2.097	4.98	1.89	3.9	95.6	0.5	0.22	2.93	0.74	0.86	2.90	15904	1957	10	6	6	0	0	logfile
✔	8VE3	43163	2024-09-23	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.002	0.61	0.0	0.05	13.12	0.01	2.589	8.57	5.08	2.2	97.8	0.0	0.27	0.42	0.75	0.78	3.69	3210	466	4	0	0	0	0	logfile
✔	8VE7	43167	2024-09-23	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.62	0.0	0.04	15.09	0.00	2.515	8.36	2.54	3.1	96.9	0.0	2.88	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8VE0	43160	2024-09-23	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.003	0.56	0.0	0.05	15.25	0.00	2.542	6.83	1.42	1.5	98.5	0.0	0.93	0.68	0.73	0.81	3.87	3527	466	6	0	2	0	0	logfile
✔	8VE1	43161	2024-09-23	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.003	0.60	0.0	0.05	15.74	0.00	2.352	5.47	1.56	2.4	97.6	0.0	-0.15	0.39	0.76	0.87	5.33	3656	466	10	0	2	27	0	logfile
✔	8VE6	43166	2024-09-23	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.002	0.61	0.0	0.05	12.10	0.01	2.610	4.11	0.00	1.5	98.5	0.0	-0.17	0.43	0.78	0.79	—	3178	465	5	0	1	0	0	logfile

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