Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XD6	38267	2024-09-23	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.004	0.56	0.0	0.04	16.23	0.00	2.521	5.68	1.46	1.4	98.6	0.0	1.52	0.42	0.47	0.92	4.79	3402	419	2	0	4	44	0	logfile
✔	8XCT	38254	2024-09-23	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.005	0.56	0.0	0.04	16.54	0.00	2.478	4.07	1.18	3.4	96.4	0.2	1.55	1.73	0.43	0.90	4.40	3358	417	2	0	1	28	0	logfile
✔	8XCo	38249	2024-09-23	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.003	0.51	0.0	0.04	17.33	0.00	2.441	3.77	1.18	3.1	96.9	0.0	1.97	0.56	0.50	0.93	4.27	3335	416	2	0	1	14	0	logfile
✔	8XD1	38262	2024-09-23	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.003	0.56	0.0	0.04	17.26	0.01	2.528	6.08	0.88	3.9	96.1	0.0	1.67	0.48	0.42	0.88	3.06	3307	416	2	0	1	9	0	logfile
✔	8XCS	38253	2024-09-23	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.54	0.0	0.04	16.72	0.00	2.446	4.06	1.47	1.9	98.1	0.0	1.74	0.89	0.49	0.93	5.70	3360	418	2	0	3	20	0	logfile
✔	8XCW	38257	2024-09-23	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.003	0.53	0.0	0.04	16.94	0.00	2.428	4.98	1.47	2.7	97.3	0.0	1.91	0.41	0.48	0.92	3.31	3347	416	2	0	2	17	0	logfile
✔	8XD0	38261	2024-09-23	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.005	0.57	0.0	0.05	17.88	0.00	2.551	5.71	1.47	2.9	96.9	0.2	1.47	0.83	0.45	0.91	3.74	3357	417	2	0	2	14	0	logfile
✔	8XCM	38247	2024-09-24	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.61	0.00	1.803	11.43	3.95	4.8	95.2	0.0	0.41	0.48	0.74	0.83	2.43	8605	1089	5	0	6	0	0	logfile
✔	8XCi	38244	2024-09-24	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.004	0.79	0.0	0.05	18.06	0.01	2.297	13.19	5.12	10.6	89.0	0.4	-2.00	0.49	0.50	0.75	1.78	8842	1143	3	0	0	0	0	logfile
✔	8XCJ	38245	2024-09-28	2023-12-09	2.98	3.11	2.98	3.1	0.004	0.69	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.008	0.80	0.0	0.05	18.43	0.01	2.464	7.94	5.26	4.6	95.0	0.4	-0.80	0.23	0.76	0.89	4.08	19809	2526	6	0	0	0	0	logfile
✔	8XCN	38248	2024-09-24	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.34	0.01	1.610	14.34	3.28	4.2	95.8	0.0	0.32	1.16	0.74	0.83	2.28	8601	1089	5	0	6	0	0	logfile
✔	8RDU	19075	2024-09-26	2023-12-08	2.3	2.53	—	2.6	0.006	0.89	0.0	0.06	19.92	0.01	1.739	3.45	0.77	2.7	97.3	0.0	-1.13	0.69	0.77	4.20	2.6	0.005	0.70	0.0	0.04	21.41	0.01	1.835	7.82	2.18	2.6	97.4	0.0	0.89	0.86	0.68	0.81	3.26	61430	6103	71	526	33	862	0	logfile
✔	8XBS	38227	2024-09-25	2023-12-07	2.21	2.40	2.28	2.5	0.006	1.17	24.0	0.08	22.13	0.01	2.189	8.39	3.17	3.6	96.4	0.0	1.61	0.70	0.86	4.39	2.5	0.003	0.62	0.0	0.04	17.70	0.00	2.496	5.10	2.46	3.2	96.8	0.0	2.04	1.11	0.70	0.87	4.17	10658	1282	8	0	22	0	0	logfile
✔	8XBW	38231	2024-09-23	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.27	0.0	0.06	23.55	0.00	2.473	27.75	2.48	3.4	96.6	0.0	-2.17	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	8XC1	38236	2024-09-26	2023-12-07	2.21	2.60	2.41	2.6	0.004	1.19	21.0	0.09	24.88	0.01	1.869	10.58	2.05	3.9	96.1	0.0	1.19	0.63	0.81	3.49	2.6	0.003	0.65	0.0	0.04	21.09	0.00	2.297	6.36	2.22	3.3	96.7	0.0	1.04	1.58	0.62	0.80	3.31	13542	1320	12	120	22	0	0	logfile
✔	8RC6	19049	2024-09-26	2023-12-06	3.3	2.08	3.27	3.4	0.005	0.59	0.0	0.04	12.31	0.00	1.989	6.15	0.58	1.4	98.4	0.1	-1.45	0.77	0.77	3.60	3.4	0.004	0.60	0.0	0.04	15.83	0.00	2.375	6.81	2.47	5.5	94.4	0.1	-0.70	0.66	0.76	0.77	3.05	12194	780	6	0	0	0	6076	logfile
✔	8XB8	38214	2024-09-24	2023-12-06	3.4	3.65	3.41	3.6	0.003	0.50	0.0	0.05	16.09	0.00	2.241	12.12	0.30	2.0	98.0	0.0	1.47	0.75	0.78	3.23	3.6	0.003	0.51	0.0	0.05	16.74	0.00	2.590	11.01	2.58	2.5	97.5	0.0	1.74	0.24	0.76	0.80	2.90	50400	5940	60	0	0	0	0	logfile
✔	8RBZ	19040	2024-09-29	2023-12-05	3.7	3.61	3.88	3.2	0.004	0.85	0.0	0.05	13.32	0.01	2.184	2.46	0.25	3.5	96.5	0.0	1.71	0.79	0.69	1.36	3.2	0.003	0.69	0.0	0.04	15.10	0.00	2.055	8.46	1.28	3.6	96.4	0.0	1.48	1.21	0.80	0.70	1.32	74102	10096	23	0	13	0	0	logfile
✔	8XAY	38207	2024-09-24	2023-12-05	2.81	3.06	2.92	3.1	0.005	0.83	1.0	0.05	17.84	0.01	1.996	6.40	0.29	2.5	97.5	0.0	-1.94	0.75	0.85	3.21	3.1	0.002	0.53	0.0	0.04	18.20	0.00	1.932	6.44	2.06	2.4	97.6	0.0	0.17	0.48	0.70	0.85	3.32	48987	5887	26	26	12	0	0	logfile
✔	8XAX	38206	2024-09-24	2023-12-05	2.92	3.17	3.05	3.2	0.004	0.81	2.0	0.05	18.85	0.01	2.068	7.34	0.88	3.4	96.6	0.0	-2.30	0.73	0.83	2.52	3.2	0.004	0.59	0.0	0.04	18.61	0.00	1.956	8.65	3.03	3.0	97.0	0.0	-0.36	0.51	0.70	0.85	2.97	48954	5887	25	26	9	0	0	logfile

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