Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XAW	38205	2024-09-23	2023-12-05	2.73	2.98	2.85	3.0	0.005	0.81	1.0	0.05	18.55	0.01	2.039	6.68	0.60	2.9	97.1	0.0	-2.09	0.73	0.81	2.86	3.0	0.003	0.56	0.0	0.04	18.54	0.00	1.939	8.24	2.28	2.6	97.4	0.0	-0.08	1.46	0.65	0.81	3.40	48983	5887	26	26	12	0	0	logfile
✔	8XAY	38207	2024-09-24	2023-12-05	2.81	3.06	2.92	3.1	0.005	0.83	1.0	0.05	17.84	0.01	1.996	6.40	0.29	2.5	97.5	0.0	-1.94	0.75	0.85	3.21	3.1	0.002	0.53	0.0	0.04	18.20	0.00	1.932	6.44	2.06	2.4	97.6	0.0	0.17	0.48	0.70	0.85	3.32	48987	5887	26	26	12	0	0	logfile
✔	8RBZ	19040	2024-09-29	2023-12-05	3.7	3.61	3.88	3.2	0.004	0.85	0.0	0.05	13.32	0.01	2.184	2.46	0.25	3.5	96.5	0.0	1.71	0.79	0.69	1.36	3.2	0.003	0.69	0.0	0.04	15.10	0.00	2.055	8.46	1.28	3.6	96.4	0.0	1.48	1.21	0.80	0.70	1.32	74102	10096	23	0	13	0	0	logfile
✔	8XAJ	38200	2024-09-25	2023-12-04	3.29	3.52	4.38	3.4	0.009	1.09	0.0	0.05	16.78	0.01	1.547	16.03	0.00	11.3	88.7	0.0	-1.52	0.68	0.76	2.25	3.4	0.003	0.71	0.0	0.04	17.42	0.01	2.561	11.13	1.93	9.7	90.3	0.0	0.08	1.14	0.65	0.75	1.70	11668	1410	3	0	7	0	0	logfile
✔	8V7Z	43011	2024-09-24	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.005	0.66	0.0	0.04	19.28	0.00	1.920	10.18	6.18	5.8	94.1	0.1	-0.23	0.22	0.57	0.76	1.67	8977	1104	2	0	10	0	0	logfile
✔	8V81	43014	2024-09-25	2023-12-04	3.6	2.82	3.57	3.6	0.003	0.53	0.0	0.04	19.32	0.00	1.993	6.01	0.50	3.7	96.3	0.0	-0.73	0.63	0.79	1.20	3.6	0.003	0.52	0.0	0.04	18.96	0.00	1.992	5.16	5.84	2.9	97.1	0.0	-0.08	0.28	0.62	0.78	0.98	9258	1132	2	0	11	0	0	logfile
✔	8V85	43023	2024-09-23	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile
✔	8V7L	43003	2024-09-30	2023-12-04	2.9	3.39	2.93	3.1	0.010	1.36	0.0	0.08	21.51	0.01	2.316	1.99	2.32	3.6	96.2	0.3	-1.48	0.76	0.57	3.23	3.1	0.004	0.59	0.0	0.03	25.48	0.00	1.846	11.47	0.97	4.5	95.4	0.1	1.16	1.56	0.86	0.81	2.69	25545	1203	12	280	2	0	10096	logfile
✔	8RBM	19032	2024-09-25	2023-12-04	3.24	3.96	3.31	3.8	0.007	0.91	0.0	0.23	19.32	0.00	2.218	6.53	2.06	3.2	96.5	0.3	0.31	0.76	0.83	2.56	3.8	0.003	0.71	0.0	0.04	13.82	0.00	2.440	7.01	1.88	5.2	94.5	0.2	1.38	0.53	0.75	0.88	2.18	11259	1425	12	0	20	0	0	logfile
✔	8RB5	19026	2024-09-24	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.003	0.58	0.0	0.03	17.45	0.01	2.432	7.53	0.64	2.8	97.2	0.0	1.72	1.43	0.30	0.80	1.92	8772	540	3	0	0	0	4422	logfile
✔	8RB7	19027	2024-09-23	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.61	0.0	0.04	17.94	0.00	2.317	8.21	0.32	2.5	97.5	0.0	1.87	2.08	0.28	0.76	1.70	5848	360	2	0	0	0	2948	logfile
✔	8RB8	19028	2024-09-26	2023-12-03	3.41	4.14	3.49	3.8	0.006	0.87	0.0	0.22	19.00	0.00	2.169	5.23	1.51	4.5	95.3	0.2	0.92	0.77	0.84	1.81	3.9	0.003	0.65	0.0	0.04	13.60	0.00	2.465	6.21	1.03	4.7	95.3	0.1	1.79	0.61	0.77	0.90	1.64	12585	1605	13	0	22	0	0	logfile
✔	8RB9	19029	2024-09-26	2023-12-03	3.19	3.83	3.27	3.6	0.007	0.94	0.0	0.22	20.53	0.00	2.148	5.77	1.99	5.0	94.9	0.1	0.54	0.79	0.85	2.38	3.6	0.003	0.63	0.0	0.04	14.07	0.00	2.440	5.69	1.51	4.7	95.2	0.1	1.54	1.02	0.77	0.90	1.95	12743	1605	13	0	26	0	0	logfile
✔	8RB4	19025	2024-09-26	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.003	0.62	0.0	0.04	17.29	0.00	2.385	8.07	2.05	2.4	97.5	0.1	1.44	2.23	0.48	0.79	1.38	14620	900	5	0	0	0	7370	logfile
✔	8V6N	42997	2024-09-29	2023-12-01	2.59	2.81	2.72	2.9	0.008	1.22	0.0	0.05	16.90	0.01	2.274	3.79	0.00	5.6	94.4	0.0	-6.02	0.59	0.78	3.84	2.9	0.003	0.64	0.0	0.04	17.45	0.00	2.306	5.29	2.03	5.4	94.6	0.0	0.66	1.13	0.65	0.86	3.48	22185	2544	12	0	33	184	0	logfile
✔	8V6L	42995	2024-09-29	2023-12-01	3.68	3.99	3.86	3.9	0.004	0.63	0.0	0.04	16.49	0.00	2.001	8.76	5.12	13.4	86.6	0.0	-1.18	0.68	0.82	2.42	4.0	0.003	0.77	0.0	0.04	17.88	0.00	2.334	8.21	4.65	11.2	88.7	0.0	-0.84	4.77	0.70	0.82	1.35	22387	2612	8	0	27	0	0	logfile
✔	8V62	42987	2024-09-27	2023-12-01	3.4	2.29	3.50	2.1	0.002	0.56	0.0	0.04	10.43	0.01	2.027	2.06	0.00	0.9	99.1	0.0	0.61	0.75	0.77	3.19	2.1	0.004	0.60	0.0	0.04	14.45	0.00	2.511	4.93	2.13	2.1	97.9	0.0	0.61	0.46	0.76	0.78	2.85	15234	1980	9	0	0	0	0	logfile
✔	8V6o	42998	2024-09-29	2023-12-01	2.83	3.17	2.98	3.2	0.009	1.36	0.0	0.04	20.28	0.01	2.290	4.32	0.35	5.5	94.5	0.0	-6.54	0.61	0.74	3.73	3.1	0.002	0.64	0.0	0.04	18.64	0.00	2.479	7.88	1.23	5.4	94.6	0.0	0.92	1.11	0.67	0.85	3.16	22683	2560	12	0	43	44	0	logfile
✔	8V54	42979	2024-09-27	2023-11-30	4.1	2.60	3.83	1.7	0.003	0.48	0.0	0.04	13.24	0.00	2.178	9.69	0.81	4.4	95.6	0.0	0.98	0.75	0.74	—	1.9	0.003	0.61	0.0	0.04	14.47	0.00	2.504	8.23	0.13	3.4	96.6	0.0	1.16	1.09	0.73	0.72	—	15728	1787	5	46	0	0	0	logfile
✔	8V5D	42982	2024-09-24	2023-11-30	3.0	3.76	3.05	3.6	0.003	0.52	0.0	0.04	9.90	0.00	2.219	12.09	1.84	4.1	95.9	0.0	0.80	0.69	0.61	1.04	3.6	0.004	0.88	0.0	0.05	14.86	0.01	2.451	17.08	1.84	5.5	94.4	0.1	-0.14	1.24	0.68	0.62	0.80	6694	851	1	0	0	0	0	logfile

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