Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V0L	42860	2024-09-30	2023-11-17	3.0	3.23	3.06	3.2	0.004	0.77	0.0	0.05	14.19	0.01	2.299	2.62	0.00	4.9	95.1	0.0	-1.01	0.67	0.81	2.68	3.3	0.004	0.59	0.0	0.05	15.24	0.00	2.419	3.99	2.00	5.1	94.9	0.0	0.00	1.13	0.69	0.84	2.86	24849	3105	15	0	45	0	0	logfile
✔	8V0R	42867	2024-09-30	2023-11-17	3.0	3.22	3.18	3.3	0.004	0.74	0.0	0.05	13.57	0.01	2.244	2.74	0.00	4.3	95.7	0.1	-1.40	0.72	0.83	3.15	3.3	0.003	0.55	0.0	0.04	15.03	0.00	2.398	4.41	1.10	3.5	96.5	0.1	0.13	1.15	0.72	0.85	2.93	24903	3123	9	0	36	0	0	logfile
✔	8V0M	42861	2024-09-30	2023-11-17	3.2	3.44	3.28	3.5	0.007	0.93	0.0	0.05	14.11	0.01	1.974	3.26	0.00	5.3	94.7	0.0	-1.63	0.66	0.78	2.37	3.5	0.004	0.57	0.0	0.05	14.90	0.00	2.429	4.17	1.26	4.9	95.1	0.0	-0.65	0.39	0.66	0.80	2.23	24835	3105	15	0	44	0	0	logfile
✔	8V0Q	42866	2024-09-30	2023-11-17	3.9	4.16	3.93	4.1	0.004	0.82	0.0	0.06	14.49	0.01	2.279	3.47	0.00	4.7	95.3	0.0	-1.79	0.78	0.79	1.36	4.1	0.005	0.68	0.0	0.05	15.34	0.00	2.483	7.53	1.60	6.0	93.9	0.0	-0.64	0.44	0.79	0.81	1.22	24795	3105	12	0	42	0	0	logfile
✔	8V0N	42862	2024-09-30	2023-11-17	3.4	3.60	3.40	3.6	0.004	0.77	0.0	0.06	14.36	0.01	2.286	2.85	0.00	5.5	94.5	0.0	-1.17	0.69	0.80	2.19	3.6	0.003	0.56	0.0	0.04	15.10	0.00	2.462	3.93	1.90	4.9	95.1	0.0	-0.16	0.34	0.69	0.81	1.97	24690	3084	15	0	45	0	0	logfile
✔	8V0T	42869	2024-09-30	2023-11-17	3.1	3.35	3.20	3.4	0.006	0.82	1.0	0.06	14.43	0.01	2.310	3.20	0.04	5.8	94.1	0.0	-1.84	0.68	0.80	2.32	3.4	0.003	0.56	0.0	0.04	15.28	0.00	2.496	5.39	1.22	4.7	95.2	0.0	-0.39	1.15	0.69	0.83	2.18	24777	3123	6	0	27	0	0	logfile
✔	8V0S	42868	2024-09-30	2023-11-17	3.3	3.50	3.36	3.5	0.005	0.88	0.0	0.06	14.64	0.01	2.264	4.97	0.00	9.4	90.5	0.1	-3.00	0.66	0.70	1.67	3.5	0.003	0.62	0.0	0.05	15.72	0.00	2.384	8.23	2.24	8.1	91.9	0.0	-2.06	0.40	0.68	0.74	1.47	24950	3126	12	0	37	0	0	logfile
✔	8X5i	38070	2024-09-27	2023-11-17	3.01	3.31	3.19	3.2	0.007	1.05	0.0	0.06	15.26	0.01	2.113	3.05	0.64	4.8	95.2	0.0	-3.57	0.69	0.85	3.46	3.2	0.004	0.81	1.0	0.05	16.15	0.00	2.033	4.90	1.75	4.3	95.7	0.0	0.26	0.53	0.75	0.88	3.16	17006	2063	8	0	8	0	0	logfile
✔	8V0o	42863	2024-09-30	2023-11-17	3.3	3.45	3.42	3.5	0.005	0.77	1.0	0.06	14.09	0.01	2.264	2.93	0.00	4.7	95.3	0.1	-1.71	0.69	0.81	3.21	3.5	0.003	0.56	0.0	0.04	14.92	0.00	2.484	3.70	1.45	4.5	95.5	0.0	-0.22	0.33	0.70	0.84	2.90	24879	3105	15	0	48	0	0	logfile
✔	8V0W	42872	2024-09-30	2023-11-17	3.3	3.47	3.29	3.5	0.005	0.87	0.0	0.06	14.32	0.01	2.236	3.46	0.00	7.8	92.2	0.0	-1.92	0.62	0.76	2.31	3.5	0.003	0.58	0.0	0.04	15.17	0.00	2.465	5.43	1.29	6.2	93.8	0.0	-0.63	0.35	0.74	0.84	2.12	24964	3123	12	0	41	0	0	logfile
✔	8V0V	42871	2024-09-30	2023-11-17	3.1	3.36	3.20	3.4	0.005	0.81	0.0	0.06	14.52	0.01	2.286	3.19	0.00	5.1	94.8	0.1	-1.56	0.63	0.79	2.60	3.4	0.004	0.59	0.0	0.04	15.26	0.00	2.426	3.98	1.47	4.8	95.1	0.1	-0.26	0.31	0.65	0.81	2.45	25051	3132	12	0	41	0	0	logfile
✔	8V0U	42870	2024-09-30	2023-11-17	3.3	3.50	3.28	3.5	0.005	0.76	0.0	0.05	14.48	0.01	2.280	3.18	0.00	4.7	95.2	0.0	-1.64	0.69	0.79	2.64	3.5	0.004	0.56	0.0	0.04	15.30	0.00	2.504	3.96	1.11	4.5	95.5	0.0	-0.39	0.33	0.75	0.85	2.70	24811	3105	12	0	39	0	0	logfile
✔	8V0X	42873	2024-09-30	2023-11-17	3.3	3.51	3.34	3.5	0.004	0.79	0.0	0.05	14.55	0.01	2.304	3.00	0.00	5.8	94.2	0.0	-1.76	0.67	0.77	2.58	3.5	0.003	0.57	0.0	0.04	15.39	0.00	2.485	5.08	1.55	3.7	96.3	0.0	-0.43	0.40	0.70	0.82	2.41	24796	3123	6	0	29	0	0	logfile
✔	8X5E	38067	2024-09-23	2023-11-17	3.61	3.77	3.58	3.7	0.007	1.27	1.0	0.07	14.32	0.00	2.438	11.64	2.53	7.8	92.2	0.0	-1.30	0.51	0.81	2.40	3.7	0.003	0.62	0.0	0.04	15.65	0.00	2.406	5.50	6.01	5.2	94.8	0.0	1.42	1.42	0.51	0.81	2.38	3216	390	2	0	8	0	0	logfile
✔	8R5o	18935	2024-09-25	2023-11-17	2.49	2.13	—	1.4	0.002	0.45	0.0	0.04	11.77	0.00	2.042	4.11	0.44	2.7	97.2	0.0	0.35	0.83	0.86	5.83	1.4	0.003	0.54	0.0	0.04	15.13	0.00	1.962	4.39	1.08	2.9	97.0	0.0	1.27	0.39	0.84	0.87	5.27	54473	6680	41	0	3	255	0	logfile
✔	8V0P	42864	2024-09-30	2023-11-17	3.3	3.60	3.41	3.6	0.005	0.79	0.0	0.06	14.49	0.01	2.294	3.21	0.00	5.0	95.0	0.0	-1.57	0.70	0.78	2.54	3.6	0.002	0.54	0.0	0.04	15.16	0.00	2.422	4.69	1.44	4.3	95.7	0.0	-0.10	0.37	0.73	0.83	2.12	24925	3111	15	0	47	0	0	logfile
✔	8X53	38060	2024-09-25	2023-11-16	3.0	3.15	2.99	3.2	0.010	1.21	12.0	0.08	14.53	0.01	1.597	5.63	0.53	4.8	95.1	0.1	-3.49	0.35	0.54	2.55	3.2	0.003	0.63	0.0	0.04	14.40	0.00	2.382	6.36	2.46	3.1	96.8	0.1	0.85	0.58	0.60	0.80	2.39	10947	1334	14	0	26	0	0	logfile
✔	8X51	38058	2024-09-24	2023-11-16	2.92	3.16	2.94	3.2	0.008	1.27	0.0	0.07	18.47	0.01	2.328	1.89	0.00	7.3	92.3	0.3	-3.65	0.56	0.76	3.45	3.2	0.004	0.69	0.0	0.05	20.56	0.00	2.336	5.72	3.07	6.2	93.5	0.3	-0.69	1.34	0.61	0.80	2.69	8095	885	6	42	2	0	0	logfile
✔	8X52	38059	2024-09-25	2023-11-16	2.9	3.11	2.86	3.3	0.009	1.13	7.0	0.07	14.34	0.01	1.598	7.57	0.88	4.7	95.2	0.2	-3.49	0.49	0.63	2.82	3.2	0.003	0.63	0.0	0.04	14.80	0.00	2.422	6.94	2.10	2.9	97.0	0.1	0.80	0.78	0.66	0.83	2.78	10907	1334	14	0	25	0	0	logfile
✔	8X54	38061	2024-09-25	2023-11-16	2.9	3.26	3.00	3.2	0.010	1.15	6.0	0.07	14.62	0.01	1.597	6.23	1.05	4.6	95.4	0.0	-3.47	0.40	0.59	2.75	3.2	0.003	0.62	0.0	0.04	14.49	0.00	2.407	4.65	2.01	2.7	97.2	0.1	0.94	1.28	0.61	0.82	2.69	11009	1337	14	0	27	0	0	logfile

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