Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X52	38059	2024-09-25	2023-11-16	2.9	3.11	2.86	3.3	0.009	1.13	7.0	0.07	14.34	0.01	1.598	7.57	0.88	4.7	95.2	0.2	-3.49	0.49	0.63	2.82	3.2	0.003	0.63	0.0	0.04	14.80	0.00	2.422	6.94	2.10	2.9	97.0	0.1	0.80	0.78	0.66	0.83	2.78	10907	1334	14	0	25	0	0	logfile
✔	8R54	18891	2024-09-27	2023-11-15	3.5	3.54	3.52	3.5	0.006	0.65	1.0	0.05	18.75	0.00	2.176	9.13	0.35	8.8	91.2	0.1	-1.09	0.83	0.85	2.67	3.5	0.005	0.82	1.0	0.05	17.17	0.00	2.454	7.40	2.89	7.0	93.0	0.0	-0.77	0.23	0.82	0.85	2.50	15900	1982	11	0	24	0	0	logfile
✔	8R51	18890	2024-09-26	2023-11-15	3.2	3.29	3.12	3.3	0.004	0.52	0.0	0.05	16.46	0.00	2.103	6.56	0.57	5.9	94.1	0.0	-0.39	0.77	0.88	3.90	3.3	0.003	0.54	0.0	0.04	16.59	0.00	2.346	5.94	3.53	4.9	95.1	0.0	-0.53	0.26	0.78	0.90	3.57	13978	1793	6	0	13	0	0	logfile
✔	8UZB	42838	2024-09-25	2023-11-14	2.63	2.93	2.72	2.9	0.003	0.53	0.0	0.04	20.26	0.00	2.147	5.73	0.00	3.7	96.3	0.0	0.49	0.67	0.78	2.83	2.9	0.003	0.54	0.0	0.04	21.22	0.00	2.463	5.14	1.48	3.4	96.6	0.0	0.99	0.34	0.68	0.81	2.39	10882	910	4	162	0	0	0	logfile
✔	8UZ1	42830	2024-09-24	2023-11-14	3.6	3.84	3.63	3.9	0.012	1.91	30.0	0.11	15.16	0.01	1.829	0.04	1.34	4.9	94.9	0.2	-1.77	0.76	0.83	3.08	3.9	0.004	0.65	0.0	0.04	15.74	0.00	1.197	4.34	1.63	3.7	96.3	0.0	-0.16	1.52	0.70	0.81	1.95	52410	3348	18	0	27	0	25941	logfile
✔	8UZ0	42829	2024-09-24	2023-11-14	2.8	3.08	2.94	3.1	0.012	1.89	40.0	0.11	15.93	0.02	1.973	0.23	3.11	3.7	96.2	0.1	-1.29	0.69	0.81	4.01	3.1	0.004	0.75	0.0	0.04	17.19	0.00	1.791	3.28	2.30	2.7	97.3	0.0	0.99	1.56	0.62	0.79	3.08	52371	3348	18	0	18	0	25938	logfile
✔	8UZA	42837	2024-09-25	2023-11-14	3.17	3.37	3.20	3.3	0.004	0.55	0.0	0.04	21.34	0.00	2.122	7.07	0.25	4.8	95.2	0.0	-0.15	0.77	0.84	2.56	3.3	0.004	0.54	0.0	0.04	21.41	0.00	2.268	5.17	1.97	5.0	95.0	0.0	0.13	0.23	0.77	0.84	2.04	11072	910	4	171	0	0	0	logfile
✔	8R47	18881	2024-09-23	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.041	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.37	0.00	2.532	7.20	1.52	5.5	94.5	0.0	-3.98	1.04	0.52	0.83	6.20	3780	498	6	0	0	0	0	logfile
✔	8UYF	42804	2024-09-24	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.79	0.00	2.490	6.03	1.95	1.9	98.1	0.0	1.60	0.98	0.75	0.87	3.62	6460	801	2	0	0	0	0	logfile
✔	8UYi	42807	2024-09-23	2023-11-13	3.13	3.34	3.23	3.4	0.004	0.67	0.0	0.04	12.68	0.00	2.057	4.03	1.08	2.1	97.9	0.0	-0.84	0.52	0.74	3.12	3.4	0.002	0.61	0.0	0.04	15.34	0.00	1.971	7.64	2.77	2.3	97.7	0.0	1.62	2.35	0.65	0.82	2.26	5980	738	4	0	6	0	0	logfile
✔	8R4B	18884	2024-09-24	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.005	0.80	0.0	0.05	17.28	0.00	2.399	13.85	4.31	9.7	90.0	0.3	-2.60	1.58	0.77	0.72	1.48	7600	1031	4	0	1	0	0	logfile
✔	8UYH	42806	2024-09-23	2023-11-13	2.84	2.98	2.94	3.1	0.006	0.76	0.0	0.04	13.96	0.01	2.074	3.66	1.52	1.1	98.9	0.0	-1.53	0.55	0.80	3.13	3.1	0.003	0.51	0.0	0.04	15.80	0.00	1.945	5.48	2.73	2.1	97.9	0.0	1.51	1.25	0.60	0.82	2.16	6036	745	4	0	5	0	0	logfile
✔	8R4D	18886	2024-09-23	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.67	0.0	0.04	17.00	0.00	2.504	13.24	3.57	10.4	88.9	0.7	-2.50	1.50	0.52	0.58	2.14	3573	478	3	0	1	0	0	logfile
✔	8R4C	18885	2024-09-23	2023-11-13	3.55	2.98	3.52	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.004	0.74	0.0	0.04	18.39	0.01	2.521	10.85	6.74	10.4	89.6	0.0	-2.84	0.23	0.63	0.76	1.71	4027	553	2	0	0	0	0	logfile
✔	8UXX	42788	2024-09-30	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.003	0.62	0.0	0.04	15.97	0.00	0.978	4.25	1.64	3.3	96.7	0.0	-0.16	2.06	0.72	0.84	2.45	77402	4916	26	0	27	5	38340	logfile
✔	8UXW	42787	2024-09-30	2023-11-11	2.7	2.92	2.78	3.0	0.013	1.92	15.0	0.10	15.35	0.02	1.860	0.28	2.69	3.0	97.0	0.0	-1.20	0.48	0.72	4.73	3.0	0.003	0.61	0.0	0.04	16.70	0.00	1.868	3.16	1.48	2.0	98.0	0.0	0.75	1.11	0.62	0.85	3.86	77359	4916	25	0	20	0	38330	logfile
✔	8R3T	18874	2024-09-23	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.007	1.45	0.0	0.06	14.10	0.00	2.514	4.42	3.21	7.0	93.0	0.0	-3.10	1.75	0.38	0.76	5.01	5438	354	6	0	0	0	2804	logfile
✔	8R3Z	18878	2024-09-24	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.002	0.56	0.0	0.04	17.72	0.00	2.034	11.54	2.71	2.3	97.7	0.0	0.47	0.51	0.82	0.77	1.68	6389	755	3	6	1	0	0	logfile
✔	8R3G	18864	2024-09-26	2023-11-09	4.4	4.64	4.35	4.4	0.013	1.54	0.0	0.10	19.04	0.01	2.243	11.87	0.18	1.7	98.3	0.0	-1.19	0.73	0.52	—	4.3	0.003	0.70	0.0	0.04	18.34	0.00	2.397	14.03	0.00	2.7	97.3	0.0	0.67	1.51	0.85	0.76	—	11985	1340	6	82	0	0	0	logfile
✔	8X2H	38010	2024-09-28	2023-11-09	2.9	3.07	2.88	3.0	0.005	0.85	1.0	0.05	20.16	0.00	2.037	16.30	13.38	8.7	91.1	0.2	-4.22	0.60	0.58	0.86	3.0	0.003	0.74	0.0	0.05	19.45	0.00	2.386	10.34	5.01	7.2	92.7	0.1	-1.83	1.29	0.63	0.62	0.79	19088	2363	2	0	1	0	0	logfile

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