Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WZB	37949	2024-09-28	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.006	0.80	0.0	0.05	18.01	0.01	2.464	14.02	4.49	4.8	95.1	0.0	-0.90	0.55	0.82	0.81	2.37	17594	2181	11	0	0	0	0	logfile
✔	8UTW	42552	2024-09-25	2023-10-31	3.4	2.15	3.43	4.0	0.005	0.87	1.0	0.05	19.46	0.01	1.938	6.12	1.89	6.5	93.3	0.2	-0.80	0.51	0.74	1.87	4.0	0.003	0.62	0.0	0.04	17.92	0.01	1.872	5.81	2.92	6.0	93.9	0.1	0.67	0.43	0.51	0.73	1.74	9787	1227	6	1	3	0	0	logfile
✔	8UTo	42544	2024-09-29	2023-10-31	3.2	2.44	3.17	3.3	0.005	0.81	0.0	0.05	18.60	0.01	1.940	3.67	0.59	3.8	95.9	0.3	-0.12	0.64	0.84	3.00	3.3	0.003	0.60	0.0	0.04	17.23	0.00	1.932	5.02	2.38	3.4	96.4	0.2	0.63	0.94	0.65	0.86	2.75	23792	2982	16	2	11	0	0	logfile
✔	8UTV	42551	2024-09-26	2023-10-31	3.0	2.58	3.11	3.2	0.005	0.85	0.0	0.05	17.97	0.01	2.091	4.84	0.70	4.1	95.9	0.1	-0.10	0.59	0.82	3.19	3.3	0.004	0.77	1.0	0.05	17.37	0.00	2.142	8.61	2.09	4.0	96.0	0.0	0.43	1.39	0.60	0.86	2.90	13337	1679	9	1	6	0	0	logfile
✔	8WYi	37929	2024-09-23	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.003	0.84	0.0	0.04	19.03	0.00	2.361	10.47	6.88	11.0	88.1	0.9	-0.27	1.22	0.61	0.76	0.82	4659	589	8	0	0	0	0	logfile
✔	8UTT	42549	2024-09-29	2023-10-31	3.1	2.46	3.19	3.3	0.007	0.96	0.0	0.06	19.18	0.01	1.190	6.78	1.60	5.3	94.3	0.4	-0.45	0.60	0.84	2.90	3.3	0.003	0.65	0.0	0.04	17.28	0.00	1.928	5.63	2.07	4.1	95.7	0.1	1.04	0.54	0.60	0.86	2.62	23744	2974	16	2	11	0	0	logfile
✔	8UTN	42543	2024-09-29	2023-10-31	3.1	2.25	3.07	2.2	0.006	0.89	2.0	0.05	18.88	0.01	1.920	5.11	1.64	3.7	95.5	0.8	-0.26	0.63	0.82	3.47	2.2	0.003	0.60	0.0	0.04	17.22	0.00	1.972	5.02	2.69	3.6	96.4	0.1	0.72	0.95	0.63	0.83	3.14	23784	2981	16	2	11	0	0	logfile
✔	8UTU	42550	2024-09-26	2023-10-31	3.0	2.25	2.97	2.2	0.006	0.97	1.0	0.05	18.78	0.01	1.969	5.30	1.50	3.7	96.1	0.2	-0.42	0.57	0.83	3.42	2.2	0.003	0.61	0.0	0.04	17.66	0.00	1.977	4.33	2.32	3.5	96.5	0.0	0.89	0.46	0.57	0.83	3.14	13615	1709	9	1	7	0	0	logfile
✔	8UTP	42545	2024-09-29	2023-10-31	3.2	2.45	3.19	3.3	0.005	0.85	1.0	0.05	18.53	0.01	1.930	4.23	0.94	4.2	95.4	0.4	-0.04	0.65	0.85	3.10	3.3	0.003	0.60	0.0	0.04	17.32	0.00	1.903	4.78	2.69	3.5	96.3	0.1	0.87	1.74	0.65	0.86	2.82	23792	2982	16	2	11	0	0	logfile
✔	8UTR	42547	2024-09-25	2023-10-31	3.3	2.47	3.29	3.4	0.004	0.78	0.0	0.05	18.17	0.01	1.777	3.27	0.66	4.2	95.6	0.2	0.03	0.59	0.84	3.09	3.4	0.003	0.61	0.0	0.04	17.12	0.00	1.960	5.19	1.89	3.5	96.5	0.0	1.02	0.48	0.60	0.85	2.77	9792	1230	7	1	4	0	0	logfile
✔	8WYX	37940	2024-09-24	2023-10-31	3.5	3.89	3.49	3.4	0.005	0.57	0.0	0.04	13.61	0.00	2.029	10.00	0.20	3.2	96.8	0.0	-0.06	0.75	0.62	0.72	3.5	0.005	0.80	1.0	0.05	16.40	0.00	2.001	15.80	3.34	4.7	95.3	0.0	-0.63	1.57	0.79	0.69	1.11	8809	1070	2	0	1	0	0	logfile
✔	8UTF	42539	2024-09-25	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.45	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.004	0.59	0.0	0.05	15.98	0.00	2.491	3.53	2.24	1.5	98.5	0.0	1.36	1.46	0.77	0.86	2.95	9827	1248	15	0	9	134	0	logfile
✔	8UTQ	42546	2024-09-27	2023-10-31	3.1	3.03	3.11	3.4	0.005	0.81	0.0	0.05	18.60	0.01	1.891	3.87	0.22	4.1	95.8	0.1	0.10	0.67	0.86	3.21	3.4	0.004	0.65	0.0	0.04	16.26	0.00	1.843	5.47	1.77	4.1	95.9	0.0	0.91	0.94	0.66	0.88	2.96	16825	2110	12	2	8	0	0	logfile
✔	8UTM	42542	2024-09-26	2023-10-31	4.32	3.34	4.34	2.2	0.009	1.55	9.0	0.09	7.59	0.01	2.603	0.05	0.00	2.7	97.3	0.0	-1.95	0.75	0.74	—	2.2	0.005	0.66	0.0	0.04	4.71	0.00	2.360	1.52	0.00	4.9	95.1	0.0	0.72	1.81	0.79	0.77	—	14176	2856	8	0	0	0	0	logfile
✔	8UTY	42553	2024-09-29	2023-10-31	3.3	2.75	3.27	3.5	0.006	0.88	0.0	0.05	18.43	0.01	1.941	5.20	1.45	4.4	94.8	0.8	-0.11	0.56	0.83	2.61	3.4	0.006	0.98	3.0	0.05	16.61	0.00	1.827	8.60	2.58	3.9	95.9	0.1	0.70	1.37	0.57	0.84	2.35	23765	2979	16	2	11	0	0	logfile
✔	8WY0	37914	2024-09-23	2023-10-30	3.8	4.17	3.79	4.1	0.003	0.71	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.83	0.0	0.04	17.82	0.00	2.540	11.10	6.76	7.2	92.8	0.0	-0.61	0.64	0.61	0.75	1.38	4656	587	9	0	1	0	0	logfile
✔	8WYC	37923	2024-09-29	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.004	0.62	0.0	0.04	18.86	0.00	2.414	10.07	4.22	3.2	96.8	0.0	0.00	0.42	0.72	0.87	2.67	22385	2680	10	0	4	0	0	logfile
✔	8WY5	37916	2024-09-27	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.003	0.69	0.0	0.05	19.58	0.00	2.363	8.65	1.35	5.7	93.9	0.3	-1.15	1.03	0.65	0.76	1.98	16038	1770	12	76	4	0	0	logfile
✔	8WY4	37915	2024-09-27	2023-10-30	2.81	2.99	2.90	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.004	0.74	0.0	0.05	17.62	0.00	2.477	5.00	1.87	5.1	94.9	0.0	0.16	0.52	0.69	0.79	2.37	14864	1804	8	0	4	0	0	logfile
✔	8UT6	42531	2024-09-26	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.95	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.005	0.69	0.0	0.05	15.14	0.00	2.407	6.94	1.57	4.1	95.9	0.0	-0.37	1.10	0.61	0.80	4.45	13046	1460	11	0	257	0	0	logfile

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