Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WY0	37914	2024-09-23	2023-10-30	3.8	4.17	3.79	4.1	0.003	0.71	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.83	0.0	0.04	17.82	0.00	2.540	11.10	6.76	7.2	92.8	0.0	-0.61	0.64	0.61	0.75	1.38	4656	587	9	0	1	0	0	logfile
✔	8UT8	42533	2024-09-26	2023-10-30	3.2	3.53	3.40	3.5	0.007	1.15	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.6	0.004	0.71	0.0	0.04	15.60	0.00	2.438	10.10	2.77	4.6	95.3	0.1	-0.61	0.59	0.68	0.78	2.56	12707	1450	17	0	249	0	0	logfile
✔	8WY9	37920	2024-09-28	2023-10-30	2.57	3.04	2.67	2.9	0.002	0.51	0.0	0.04	17.96	0.00	2.086	9.74	3.47	1.8	98.2	0.0	0.70	0.84	0.89	3.35	2.9	0.003	0.57	0.0	0.04	17.65	0.00	2.543	7.55	2.43	1.7	98.3	0.0	1.18	0.92	0.78	0.87	3.24	20129	2419	4	0	0	0	0	logfile
✔	8WYF	37926	2024-09-29	2023-10-30	2.85	3.14	2.98	3.1	0.004	0.55	0.0	0.04	18.78	0.00	1.949	35.35	3.37	2.2	97.8	0.0	1.33	0.71	0.84	3.20	3.1	0.003	0.57	0.0	0.04	18.27	0.00	2.436	8.87	2.13	1.6	98.4	0.0	1.06	0.91	0.71	0.84	2.97	21408	2553	9	0	4	0	0	logfile
✔	8WY5	37916	2024-09-27	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.003	0.69	0.0	0.05	19.58	0.00	2.363	8.65	1.35	5.7	93.9	0.3	-1.15	1.03	0.65	0.76	1.98	16038	1770	12	76	4	0	0	logfile
✔	8WYE	37925	2024-09-29	2023-10-30	2.49	3.06	2.66	3.0	0.003	0.52	0.0	0.04	18.24	0.00	2.044	9.50	4.05	1.8	98.2	0.0	0.91	0.78	0.83	3.41	3.0	0.004	0.71	0.0	0.04	17.99	0.00	2.252	8.74	2.22	1.6	98.4	0.0	1.17	0.30	0.66	0.81	3.34	21232	2553	5	0	0	0	0	logfile
✔	8WYC	37923	2024-09-29	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.004	0.62	0.0	0.04	18.86	0.00	2.414	10.07	4.22	3.2	96.8	0.0	0.00	0.42	0.72	0.87	2.67	22385	2680	10	0	4	0	0	logfile
✔	8USX	42522	2024-09-28	2023-10-30	4.1	4.33	4.14	4.1	0.003	0.62	0.0	0.04	11.31	0.00	2.167	9.14	0.21	6.8	92.6	0.5	0.07	0.65	0.63	—	4.1	0.004	0.66	0.0	0.05	11.33	0.00	2.373	8.13	0.00	7.1	92.4	0.5	0.05	0.94	0.66	0.64	—	17926	2967	4	0	0	0	0	logfile
✔	8WXF	37905	2024-09-27	2023-10-29	4.0	4.27	4.10	4.2	0.003	0.71	0.0	0.05	17.29	0.01	2.188	15.21	0.75	4.8	95.1	0.1	-1.25	0.74	0.80	—	4.2	0.003	0.65	0.0	0.04	17.58	0.00	2.316	11.54	3.81	4.4	95.4	0.1	-0.45	0.37	0.78	0.81	—	16380	2190	3	0	0	0	0	logfile
✔	8USP	42510	2024-09-24	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.64	0.0	0.04	16.23	0.00	2.373	8.08	1.70	3.1	96.9	0.0	1.34	0.45	0.83	0.83	1.05	47406	5892	6	0	0	0	0	logfile
✔	8QZP	18779	2024-09-30	2023-10-28	4.15	4.36	4.20	4.2	0.005	0.80	0.0	0.04	14.08	0.01	2.205	22.06	1.23	8.0	91.4	0.6	-1.51	0.78	0.75	—	4.2	0.004	0.75	0.0	0.04	13.81	0.01	2.371	16.68	0.00	7.7	92.2	0.1	-1.01	0.46	0.78	0.76	—	25393	3273	8	0	0	0	0	logfile
✔	8WXE	37904	2024-09-23	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.89	0.0	0.04	18.41	0.00	2.476	12.77	8.76	4.8	95.2	0.0	-0.30	0.94	0.56	0.74	—	4388	548	9	0	1	0	0	logfile
✔	8WX3	37899	2024-09-24	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.17	0.00	2.587	5.73	2.56	3.1	96.7	0.2	1.65	1.81	0.56	0.84	2.50	7498	974	2	0	0	0	0	logfile
✔	8WX2	37898	2024-09-24	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.033	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.85	0.0	0.05	16.35	0.01	2.531	11.43	2.99	7.6	92.4	0.0	0.95	0.63	0.59	0.74	0.53	6800	880	2	0	0	0	0	logfile
✔	8WX0	37896	2024-09-26	2023-10-27	3.7	3.44	3.68	3.6	0.003	0.58	0.0	0.05	18.73	0.00	2.207	10.32	0.57	4.5	95.3	0.2	0.35	0.65	0.82	2.04	3.6	0.005	0.68	0.0	0.05	18.84	0.00	2.464	8.36	6.75	5.1	94.8	0.2	0.20	0.22	0.68	0.83	1.75	13672	1782	7	15	0	0	0	logfile
✔	8WX5	37901	2024-09-23	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.004	0.76	0.0	0.04	16.95	0.00	2.543	12.05	2.99	6.2	93.8	0.0	0.72	1.01	0.52	0.81	1.19	3857	504	2	0	0	0	0	logfile
✔	8WX4	37900	2024-09-24	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	1.335	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.003	0.55	0.0	0.04	15.15	0.00	2.578	5.39	2.04	2.5	97.5	0.0	1.43	1.31	0.57	0.82	2.42	7512	976	6	0	0	0	0	logfile
✔	8QYM	18758	2024-09-29	2023-10-26	2.73	3.22	2.84	3.1	0.002	0.47	0.0	0.04	13.61	0.01	2.215	2.77	0.04	2.4	97.6	0.0	1.18	0.81	0.89	3.16	3.1	0.004	0.81	1.0	0.04	15.73	0.00	1.693	3.06	0.88	2.6	97.4	0.0	1.21	0.90	0.80	0.90	2.80	22235	2848	14	0	18	0	0	logfile
✔	8WWP	37895	2024-09-26	2023-10-26	3.12	3.73	3.38	3.6	0.003	0.51	0.0	0.04	17.17	0.00	2.262	9.97	0.07	4.3	95.5	0.2	0.23	0.74	0.72	0.91	3.6	0.004	0.65	0.0	0.05	17.73	0.00	2.470	10.88	7.25	5.0	95.0	0.0	0.28	0.95	0.68	0.69	1.10	13125	1749	3	0	0	0	0	logfile
✔	8QZC	18774	2024-09-25	2023-10-26	3.29	3.49	3.36	3.5	0.004	0.81	0.0	0.05	13.36	0.01	2.246	3.27	0.00	4.4	95.6	0.0	-1.37	0.72	0.78	2.47	3.6	0.003	0.61	0.0	0.04	15.12	0.00	2.342	6.11	1.52	4.2	95.8	0.0	0.53	0.34	0.74	0.81	1.87	11468	1402	4	0	4	0	0	logfile

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