Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SWW	40823	2024-11-17	2023-05-19	3.4	3.55	3.37	3.5	0.021	1.69	0.0	0.12	10.73	0.01	2.231	0.95	0.00	2.7	97.3	0.0	0.60	0.60	0.80	3.83	3.5	0.003	0.65	0.0	0.04	14.42	0.00	2.414	6.65	2.78	3.3	96.7	0.0	-0.22	1.63	0.58	0.82	2.66	14799	1657	20	0	267	0	0	logfile
✔	8SWF	40811	2024-11-19	2023-05-18	3.39	3.71	3.54	3.6	0.012	1.17	1.0	0.07	10.73	0.00	2.263	1.39	0.00	3.7	95.6	0.7	-0.95	0.75	0.78	2.43	3.6	0.003	0.70	0.0	0.04	14.43	0.00	2.475	9.33	1.01	6.8	93.2	0.0	-0.54	1.61	0.74	0.81	2.30	53244	6676	8	0	0	0	0	logfile
✔	8JFT	36217	2024-11-16	2023-05-18	3.31	4.08	3.58	3.9	0.008	1.27	2.0	0.09	18.18	0.01	2.264	11.41	0.90	2.9	97.1	0.0	0.00	0.70	0.72	2.30	3.9	0.003	0.57	0.0	0.04	18.64	0.00	2.520	8.35	1.99	2.4	97.6	0.0	0.78	1.21	0.66	0.69	2.01	11176	1151	3	86	0	0	0	logfile
✔	8SWH	40814	2024-11-14	2023-05-18	3.88	4.03	3.87	3.9	0.021	1.93	0.0	0.12	12.95	0.01	2.378	1.51	0.27	3.2	96.8	0.0	-0.15	0.61	0.66	2.42	3.9	0.005	0.91	0.0	0.05	16.07	0.01	2.458	20.47	4.92	8.4	91.4	0.2	-1.93	2.56	0.63	0.69	1.88	3390	422	5	0	5	0	0	logfile
✔	8P3Q	17392	2024-11-19	2023-05-18	2.95	3.72	3.13	3.5	0.010	1.37	2.0	0.08	18.61	0.01	2.310	13.78	9.79	5.9	93.2	1.0	-1.51	0.69	0.84	2.07	3.5	0.003	0.74	0.0	0.04	16.73	0.00	2.487	10.15	2.53	3.1	96.7	0.2	1.72	1.69	0.63	0.79	1.87	18047	2299	19	0	16	7	0	logfile
✔	8P3U	17395	2024-11-18	2023-05-18	3.77	4.35	3.68	3.9	0.012	1.43	10.0	0.10	15.17	0.01	2.166	13.39	3.81	2.5	96.9	0.6	0.03	0.60	0.66	1.33	3.9	0.007	0.85	0.0	0.05	15.44	0.00	2.204	20.32	2.92	3.0	96.9	0.1	0.76	0.78	0.63	0.76	0.94	16888	2241	8	0	0	0	0	logfile
✔	8P3S	17393	2024-11-19	2023-05-18	2.95	3.61	3.08	3.4	0.012	1.46	5.0	0.11	15.80	0.01	2.216	4.98	1.80	4.3	95.2	0.5	-0.32	0.53	0.50	2.45	3.4	0.004	0.78	0.0	0.04	15.78	0.00	2.363	9.77	1.69	2.5	97.3	0.2	1.73	0.86	0.65	0.81	2.32	18195	2316	21	0	16	7	0	logfile
✔	8P3Z	17400	2024-11-18	2023-05-18	3.46	3.90	3.32	3.6	0.013	1.65	2.0	0.11	14.12	0.02	2.217	8.69	1.02	4.4	95.3	0.4	-1.65	0.56	0.57	0.42	3.6	0.004	0.73	0.0	0.04	15.59	0.00	2.355	10.71	2.22	2.3	97.7	0.0	1.70	1.83	0.66	0.82	1.41	16974	2284	8	0	0	0	0	logfile
✔	8P3V	17396	2024-11-18	2023-05-18	3.53	3.91	3.30	3.6	0.011	1.33	3.0	0.10	15.53	0.01	2.259	11.55	5.25	2.9	96.6	0.6	0.15	0.62	0.70	2.12	3.6	0.004	0.65	0.0	0.04	15.52	0.00	2.513	9.72	2.80	1.5	98.5	0.0	2.34	0.68	0.68	0.83	2.15	16914	2247	8	0	0	0	0	logfile
✔	8P3Y	17399	2024-11-18	2023-05-18	3.55	3.90	3.43	3.6	0.013	1.69	1.0	0.12	14.45	0.01	2.163	11.07	2.22	4.4	95.0	0.5	-1.70	0.61	0.66	1.59	3.6	0.006	0.89	1.0	0.05	15.00	0.00	2.244	11.58	2.28	3.1	96.8	0.1	1.52	0.87	0.67	0.82	1.64	17012	2291	8	0	0	0	0	logfile
✔	8P3W	17397	2024-11-19	2023-05-18	3.53	3.95	3.35	3.6	0.012	1.63	19.0	0.13	15.87	0.02	1.988	8.93	3.17	3.0	96.9	0.1	-0.44	0.65	0.75	2.71	3.6	0.004	0.67	0.0	0.04	15.59	0.00	2.448	9.08	1.70	1.7	98.3	0.0	2.20	1.58	0.66	0.80	2.03	17485	2251	24	0	14	33	0	logfile
✔	8P3T	17394	2024-11-18	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.6	0.003	0.63	0.0	0.04	15.61	0.00	2.553	9.41	3.53	1.3	98.7	0.0	2.43	0.71	0.67	0.83	2.15	16861	2237	8	0	0	0	0	logfile
✔	8P34	17383	2024-11-13	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.005	0.64	0.0	0.05	13.81	0.00	2.682	0.69	1.23	4.3	95.7	0.0	-1.79	0.21	0.28	0.88	6.57	711	94	1	0	0	0	0	logfile
✔	8SW7	40810	2024-11-18	2023-05-17	3.37	3.85	3.96	3.9	0.022	1.72	0.0	0.13	11.37	0.01	2.188	1.14	0.14	2.2	97.8	0.1	0.77	0.58	0.77	2.95	3.8	0.007	1.02	1.0	0.05	14.81	0.01	2.171	11.56	4.54	4.6	95.4	0.0	-0.52	1.31	0.52	0.79	2.26	15133	1664	17	0	289	0	0	logfile
✔	8P36	17384	2024-11-13	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.002	0.51	0.0	0.04	18.14	0.00	2.636	5.73	2.36	4.4	95.6	0.0	1.44	0.51	0.30	0.87	2.95	1223	161	2	0	2	0	0	logfile
✔	8P31	17382	2024-11-20	2023-05-16	3.24	3.64	3.30	3.5	0.004	0.61	0.0	0.04	14.19	0.01	2.026	6.72	0.68	3.0	97.0	0.0	1.09	0.71	0.82	2.24	3.5	0.003	0.58	0.0	0.04	14.44	0.00	2.088	5.80	1.88	3.1	96.9	0.0	1.77	0.62	0.70	0.83	2.04	20752	2644	12	0	26	0	0	logfile
✔	8P2E	17362	2024-11-17	2023-05-16	3.2	4.02	3.24	3.7	0.018	1.79	0.0	0.09	10.29	0.01	1.972	5.06	0.14	1.9	97.7	0.4	1.22	0.82	0.72	1.85	3.7	0.004	0.81	0.0	0.04	14.81	0.01	2.514	13.45	2.85	3.8	96.2	0.0	0.12	2.00	0.83	0.75	2.21	12786	1691	8	0	0	0	0	logfile
✔	8JF0	36205	2024-11-14	2023-05-16	3.5	3.90	3.44	3.7	0.015	1.80	0.0	0.08	12.10	0.01	2.235	9.31	0.28	6.8	93.2	0.0	-2.70	0.74	0.78	2.30	3.7	0.004	0.90	0.0	0.05	15.65	0.00	2.423	13.52	2.96	2.3	97.7	0.0	1.23	1.49	0.72	0.75	1.66	6578	872	2	0	0	0	0	logfile
✔	8JEK	36191	2024-11-15	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.09	0.0	0.06	16.81	0.01	1.798	6.26	2.26	5.1	94.8	0.1	0.45	0.21	0.71	0.88	4.17	8623	1089	5	0	6	0	0	logfile
✔	8JEY	36203	2024-11-14	2023-05-16	2.6	2.46	2.42	2.7	0.004	0.75	0.0	0.06	11.67	0.00	2.339	4.75	0.00	4.3	95.7	0.0	-4.60	0.41	0.80	6.81	2.7	0.004	0.65	0.0	0.05	16.57	0.00	2.643	1.74	2.24	5.7	94.3	0.0	-3.40	0.45	0.44	0.83	6.71	3060	432	6	0	0	0	0	logfile

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