Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ST3	40756	2024-11-18	2023-05-09	2.93	3.08	2.92	3.0	0.005	0.55	0.0	0.04	15.96	0.00	1.807	5.01	0.07	4.3	95.7	0.0	0.15	0.78	0.86	3.82	3.0	0.003	0.54	0.0	0.04	15.72	0.00	2.263	3.07	0.94	3.4	96.6	0.0	0.15	0.51	0.78	0.87	3.56	50327	3155	20	0	21	7	24962	logfile
✔	8oZL	17313	2024-11-14	2023-05-09	3.4	3.28	1.87	3.4	0.012	1.52	0.0	0.10	10.88	0.00	2.574	1.49	0.00	1.2	98.8	0.0	2.33	0.37	0.73	3.42	3.4	0.003	0.50	0.0	0.04	13.80	0.00	2.599	1.49	0.97	0.6	99.4	0.0	2.57	0.43	0.54	0.87	1.92	6675	870	5	0	0	0	0	logfile
✔	8JBG	36145	2024-11-15	2023-05-08	2.8	2.88	2.76	2.9	0.002	0.54	0.0	0.04	17.54	0.00	2.106	9.23	4.36	3.9	96.1	0.0	-0.10	0.67	0.82	2.97	2.9	0.003	0.60	0.0	0.04	17.61	0.00	2.470	7.08	2.94	4.4	95.6	0.0	0.81	0.30	0.65	0.83	2.90	8750	1139	6	0	0	0	0	logfile
✔	8JBE	36143	2024-11-16	2023-05-08	3.25	3.61	3.37	3.5	0.003	0.58	0.0	0.04	14.01	0.00	2.209	6.39	0.40	5.7	93.9	0.4	-0.14	0.77	0.83	2.87	3.5	0.004	0.59	0.0	0.04	15.65	0.00	2.446	4.54	1.59	5.7	94.2	0.1	0.40	0.37	0.79	0.86	2.53	11260	1400	3	0	0	0	0	logfile
✔	8JBF	36144	2024-11-15	2023-05-08	3.0	2.24	2.87	2.0	0.007	0.86	0.0	0.06	12.83	0.01	2.214	4.23	0.22	5.7	94.3	0.0	-5.19	0.78	0.78	4.30	2.0	0.003	0.65	0.0	0.04	15.29	0.00	2.522	8.12	1.86	4.0	96.0	0.0	-0.75	0.44	0.78	0.79	3.59	8784	1145	6	0	0	0	0	logfile
✔	8JB5	36141	2024-11-19	2023-05-08	2.9	2.97	2.93	2.9	0.008	0.88	2.0	0.06	17.40	0.01	1.861	14.17	6.34	5.7	94.0	0.3	-1.73	0.68	0.81	2.82	2.9	0.002	0.58	0.0	0.05	17.66	0.00	2.036	5.85	2.49	4.4	95.5	0.0	0.50	1.22	0.69	0.86	2.59	19027	2355	2	0	1	0	0	logfile
✔	8SS9	40748	2024-11-18	2023-05-08	2.72	2.88	2.72	2.9	0.014	1.36	0.0	0.23	17.97	0.01	2.329	4.43	0.36	3.9	95.8	0.3	-4.92	0.67	0.78	3.56	2.9	0.003	0.79	0.0	0.06	18.57	0.00	2.434	7.34	2.32	3.3	96.7	0.0	0.97	3.75	0.69	0.82	3.14	16319	1986	12	0	26	15	0	logfile
✔	8SS4	40743	2024-11-19	2023-05-08	3.3	3.54	3.39	3.5	0.009	1.23	0.0	0.06	10.77	0.01	2.238	3.21	0.36	8.5	91.2	0.4	-5.98	0.61	0.78	3.04	3.5	0.004	0.69	0.0	0.04	14.35	0.00	2.535	6.97	3.15	7.5	92.3	0.2	-0.28	1.22	0.64	0.79	2.05	17978	2278	7	0	1	0	0	logfile
✔	8SS5	40744	2024-11-18	2023-05-08	3.56	3.87	3.72	3.8	0.006	1.22	0.0	0.06	11.20	0.01	2.029	3.90	0.24	10.6	88.3	1.1	-5.78	0.57	0.74	2.01	3.8	0.003	0.72	0.0	0.04	15.20	0.01	2.520	10.31	1.60	10.1	89.7	0.2	-1.22	2.42	0.61	0.73	1.56	15637	1998	5	0	1	0	0	logfile
✔	8SSB	40750	2024-11-19	2023-05-08	3.66	3.93	3.74	3.9	0.009	1.55	0.0	0.06	17.48	0.01	2.258	7.33	0.72	11.4	87.4	1.2	-5.92	0.67	0.77	1.98	3.8	0.004	0.88	0.0	0.05	17.47	0.01	2.403	15.69	3.27	10.3	89.7	0.0	-1.13	3.73	0.70	0.81	1.59	19048	2304	12	0	29	0	0	logfile
✔	8JAU	36134	2024-11-19	2023-05-07	3.22	3.52	3.25	3.6	0.004	0.52	0.0	0.04	14.40	0.00	2.183	7.18	0.05	4.0	96.0	0.0	-0.99	0.70	0.75	3.31	3.5	0.003	0.53	0.0	0.04	16.52	0.00	2.485	8.89	1.78	4.7	95.3	0.0	0.49	0.41	0.71	0.84	2.61	17064	2096	11	0	1	0	0	logfile
✔	8JAJ	36127	2024-11-17	2023-05-06	3.9	4.09	3.79	3.8	0.002	0.51	0.0	0.04	12.66	0.00	2.064	6.03	0.00	3.2	96.6	0.2	0.70	0.52	0.74	0.61	3.8	0.004	0.64	0.0	0.04	15.01	0.00	2.546	6.31	1.51	4.8	94.7	0.5	-0.14	1.70	0.56	0.86	1.45	47664	6312	12	0	0	0	0	logfile
✔	8JAL	36129	2024-11-19	2023-05-06	3.3	3.48	3.27	3.4	0.003	0.63	0.0	0.04	14.49	0.00	2.255	7.12	0.00	3.2	96.8	0.0	-1.29	0.71	0.77	2.72	3.4	0.003	0.57	0.0	0.04	16.63	0.00	2.503	9.45	1.28	3.6	96.4	0.0	0.94	0.48	0.77	0.88	2.25	17226	2115	11	0	1	0	0	logfile
✔	8SRS	40740	2024-11-17	2023-05-06	2.79	3.33	2.87	3.1	0.004	0.83	0.0	0.05	19.79	0.01	2.029	3.26	0.58	3.0	97.0	0.0	-1.01	0.82	0.89	3.34	3.1	0.004	0.52	0.0	0.04	19.70	0.00	1.883	4.49	0.99	2.7	97.3	0.0	0.70	0.96	0.84	0.90	3.62	14148	1341	7	149	4	1	0	logfile
✔	8JA7	36125	2024-11-17	2023-05-05	3.02	3.83	3.16	3.5	0.004	0.63	0.0	0.04	13.42	0.00	2.158	15.41	0.00	4.8	95.2	0.0	-3.10	0.71	0.86	2.48	3.5	0.003	0.66	0.0	0.04	14.95	0.00	2.424	10.13	1.27	3.9	96.1	0.0	-0.50	0.95	0.69	0.86	1.91	13601	1784	6	0	2	0	0	logfile
✔	8J9X	36118	2024-11-17	2023-05-05	3.0	4.16	3.04	3.3	0.003	0.59	0.0	0.04	17.55	0.00	2.224	10.24	0.29	4.8	95.2	0.0	0.43	0.92	0.84	1.64	3.4	0.004	0.69	0.0	0.04	18.90	0.00	2.041	10.90	0.73	5.5	94.5	0.0	0.41	0.57	0.93	0.89	2.02	13890	1556	10	60	4	0	0	logfile
✔	8SRo	40736	2024-11-14	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.60	0.0	0.04	25.99	0.00	2.560	7.58	1.79	6.8	93.2	0.0	-0.93	0.91	0.65	0.79	3.09	4132	345	8	72	0	0	0	logfile
✔	8SRP	40737	2024-11-15	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.04	28.46	0.00	2.469	10.19	7.01	7.7	92.3	0.0	-0.41	1.24	0.74	0.72	2.58	9516	849	14	214	0	0	0	logfile
✔	8J9Y	36119	2024-11-16	2023-05-05	3.16	3.43	3.20	3.5	0.002	0.50	0.0	0.04	15.11	0.00	2.167	5.43	0.76	2.2	97.8	0.0	0.63	0.70	0.82	2.44	3.5	0.002	0.48	0.0	0.04	15.91	0.00	2.588	5.18	2.14	2.0	98.0	0.0	1.25	0.34	0.69	0.83	2.76	12154	1494	2	0	0	0	0	logfile
✔	8J9W	36117	2024-11-17	2023-05-05	2.76	3.63	2.76	3.1	0.005	0.84	3.0	0.05	18.06	0.01	2.175	8.03	0.07	4.3	95.7	0.0	-1.21	0.88	0.80	1.55	3.1	0.003	0.72	0.0	0.04	18.42	0.00	2.273	10.64	1.84	4.9	95.1	0.1	0.10	1.95	0.89	0.81	1.64	13841	1550	9	60	4	0	0	logfile

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