Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SUX	40779	2024-11-19	2023-05-13	2.93	3.14	2.96	3.2	0.003	0.53	0.0	0.04	15.61	0.00	2.166	3.82	0.00	4.0	96.0	0.0	-0.31	0.56	0.70	2.87	3.2	0.003	0.60	0.0	0.04	18.10	0.01	2.568	4.02	2.26	3.6	96.4	0.0	-0.41	0.50	0.64	0.79	2.29	18101	2231	10	0	4	0	0	logfile
✔	8JD6	36177	2024-11-18	2023-05-12	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.11	0.00	2.218	12.40	0.35	5.9	94.0	0.0	-0.74	0.62	0.65	0.86	3.4	0.003	0.64	0.0	0.04	15.97	0.00	2.362	13.36	3.81	7.4	92.5	0.0	-1.04	1.57	0.67	0.72	1.29	17192	2312	8	0	1	0	0	logfile
✔	8JCY	36169	2024-11-16	2023-05-12	2.9	3.07	2.88	3.1	0.003	0.53	0.0	0.17	12.99	0.00	2.200	6.04	0.00	4.2	95.8	0.0	0.76	0.64	0.71	2.52	3.1	0.003	0.57	0.0	0.04	13.24	0.00	2.187	4.78	2.18	4.5	95.5	0.0	0.62	0.37	0.68	0.78	2.31	10874	1525	4	0	11	0	0	logfile
✔	8JD3	36174	2024-11-18	2023-05-12	3.3	3.50	3.27	3.5	0.004	0.53	0.0	0.10	13.40	0.00	2.210	6.60	0.13	4.0	96.0	0.0	-0.23	0.62	0.64	1.75	3.5	0.006	0.72	0.0	0.04	15.10	0.00	2.469	8.37	3.33	6.6	93.4	0.0	-0.68	0.55	0.66	0.70	1.94	15770	2148	8	0	5	0	0	logfile
✔	8JD1	36172	2024-11-16	2023-05-12	3.7	3.87	3.63	3.8	0.002	0.50	0.0	0.04	12.60	0.00	2.228	6.47	0.21	6.8	93.2	0.0	-0.72	0.66	0.71	1.21	3.8	0.004	0.67	0.0	0.04	14.58	0.00	2.535	9.75	2.55	7.2	92.7	0.1	-0.69	0.57	0.65	0.69	1.42	10766	1508	5	0	7	0	0	logfile
✔	8JCW	36167	2024-11-16	2023-05-12	3.0	3.17	2.95	3.1	0.003	0.61	0.0	0.17	13.68	0.00	2.218	5.90	0.22	5.5	94.5	0.0	0.47	0.69	0.77	1.98	3.1	0.005	0.68	0.0	0.04	14.26	0.01	2.513	6.80	3.70	7.1	92.9	0.0	0.17	1.15	0.72	0.85	2.72	10760	1527	4	0	6	0	0	logfile
✔	8JCV	36166	2024-11-16	2023-05-12	3.4	3.66	3.32	3.6	0.003	0.56	0.0	0.19	14.87	0.00	2.300	7.05	0.11	4.5	95.5	0.0	1.15	0.67	0.72	1.48	3.6	0.004	0.61	0.0	0.04	14.69	0.00	2.502	7.30	1.61	5.2	94.8	0.0	0.81	0.50	0.69	0.79	1.64	10667	1514	4	0	4	0	0	logfile
✔	8JD0	36171	2024-11-16	2023-05-12	3.3	3.56	3.24	3.5	0.004	0.49	0.0	0.04	13.56	0.00	2.278	5.98	0.10	4.3	95.7	0.0	0.18	0.66	0.69	1.55	3.5	0.003	0.57	0.0	0.04	14.06	0.00	2.449	7.42	2.59	5.4	94.6	0.0	-0.24	0.37	0.71	0.78	2.06	11264	1532	5	0	12	0	0	logfile
✔	8JD5	36176	2024-11-19	2023-05-12	3.6	3.48	—	3.5	0.005	0.64	1.0	0.04	14.13	0.00	2.201	9.27	0.39	6.7	93.2	0.1	-0.84	0.62	0.68	1.58	3.5	0.003	0.65	0.0	0.04	14.92	0.00	2.488	8.00	2.74	7.5	92.5	0.0	-0.75	0.57	0.69	0.73	1.60	18028	2389	8	0	10	0	0	logfile
✔	8JCU	36165	2024-11-16	2023-05-12	2.8	3.00	2.76	3.2	0.003	0.54	0.0	0.18	14.09	0.00	2.268	5.39	0.00	4.1	95.9	0.0	0.18	0.63	0.74	2.60	3.1	0.003	0.59	0.0	0.04	14.29	0.00	2.473	4.90	1.79	4.4	95.6	0.0	0.20	0.42	0.66	0.80	2.51	10830	1527	4	0	4	0	0	logfile
✔	8JCZ	36170	2024-11-16	2023-05-12	3.0	3.18	2.98	3.2	0.003	0.57	0.0	0.18	14.97	0.00	2.247	9.10	0.22	4.4	95.6	0.0	0.07	0.65	0.75	2.15	3.2	0.004	0.60	0.0	0.04	14.02	0.00	2.538	6.83	1.62	6.3	93.7	0.0	-0.06	0.37	0.67	0.81	2.23	10540	1504	4	0	4	0	0	logfile
✔	8P1i	17350	2024-11-18	2023-05-12	2.97	3.40	3.11	3.3	0.005	0.55	0.0	0.04	13.76	0.00	1.885	4.52	0.00	3.3	96.7	0.0	1.24	0.55	0.82	4.03	3.3	0.004	0.54	0.0	0.04	15.48	0.00	2.319	3.10	0.52	2.4	97.6	0.0	1.39	0.30	0.55	0.84	3.77	47270	3076	6	0	4	0	23762	logfile
✔	8P1M	17354	2024-11-20	2023-05-12	3.23	3.48	3.23	3.5	0.003	0.54	0.0	0.04	14.93	0.00	1.946	8.09	0.00	7.1	92.6	0.3	-0.85	0.65	0.77	3.19	3.5	0.004	0.54	0.0	0.04	15.91	0.00	1.858	5.58	0.70	6.5	93.2	0.3	-0.61	0.32	0.62	0.77	2.74	21135	1298	3	5	3	0	10539	logfile
✔	8P1U	17356	2024-11-15	2023-05-12	3.3	3.59	3.29	3.7	0.003	0.56	0.0	0.04	15.31	0.00	2.269	10.25	0.21	4.1	95.9	0.0	0.73	0.63	0.74	1.66	3.6	0.003	0.56	0.0	0.04	16.09	0.00	2.411	8.31	2.63	3.7	96.3	0.0	0.93	0.40	0.60	0.75	1.88	9149	1179	5	0	0	0	0	logfile
✔	8P1K	17352	2024-11-17	2023-05-12	3.24	3.51	3.35	3.5	0.003	0.53	0.0	0.04	12.48	0.00	2.156	6.55	0.00	3.0	97.0	0.0	1.65	0.54	0.70	2.48	3.5	0.002	0.52	0.0	0.04	14.28	0.00	2.609	5.78	0.59	2.6	97.3	0.1	1.84	1.92	0.65	0.82	2.31	12261	1518	1	0	0	0	0	logfile
✔	8JCD	36158	2024-11-16	2023-05-11	3.14	4.04	3.34	3.7	0.003	0.57	0.0	0.04	28.68	0.00	2.208	9.70	0.69	2.6	97.2	0.1	1.81	0.86	0.85	1.25	3.7	0.004	0.64	0.0	0.04	28.81	0.00	2.392	9.64	2.74	3.6	96.2	0.1	2.68	0.49	0.86	0.84	0.60	10506	704	10	240	0	0	0	logfile
✔	8P0U	17338	2024-11-16	2023-05-10	2.92	3.55	3.03	2.9	0.002	0.46	0.0	0.04	17.81	0.00	1.895	5.14	3.00	2.5	97.5	0.1	0.72	0.92	0.87	3.28	3.0	0.003	0.58	0.0	0.04	17.74	0.00	2.029	6.80	1.37	2.2	97.8	0.0	1.18	1.00	0.93	0.91	3.17	10912	1310	6	18	1	0	0	logfile
✔	8P0A	17331	2024-11-14	2023-05-10	3.67	3.86	3.69	3.9	0.003	0.65	0.0	0.05	16.31	0.00	2.036	19.63	0.00	5.7	94.3	0.0	-1.96	0.67	0.69	1.79	3.9	0.003	0.77	0.0	0.05	17.83	0.00	2.035	17.64	2.91	6.4	93.6	0.0	-1.75	0.48	0.66	0.68	1.57	5764	718	5	0	4	0	0	logfile
✔	8JC0	36149	2024-11-14	2023-05-10	3.4	3.92	3.63	3.9	0.003	0.65	0.0	0.04	15.87	0.00	2.236	7.32	0.00	5.3	94.7	0.0	-1.74	0.35	0.55	1.77	3.9	0.002	0.54	0.0	0.04	16.43	0.00	2.544	3.92	2.87	4.9	95.1	0.0	-0.51	0.33	0.56	0.75	1.41	4691	589	9	0	1	0	0	logfile
✔	8JCC	36157	2024-11-16	2023-05-10	3.42	4.56	3.52	3.8	0.005	0.60	0.0	0.04	28.83	0.00	2.246	11.14	0.34	2.9	97.1	0.0	1.53	0.85	0.77	1.27	3.8	0.004	0.77	0.0	0.04	28.54	0.01	2.146	14.69	4.10	3.3	96.7	0.0	0.78	1.28	0.89	0.86	0.77	10358	707	10	232	0	0	0	logfile

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