Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SRM	40735	2024-11-14	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.60	0.0	0.04	5.02	0.00	2.434	1.56	0.00	6.0	94.0	0.0	0.75	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8JA0	36123	2024-11-17	2023-05-05	3.52	3.71	3.53	3.6	0.002	0.57	0.0	0.04	20.78	0.00	2.187	9.41	0.00	5.6	93.7	0.6	-0.68	0.73	0.79	1.35	3.6	0.003	0.61	0.0	0.04	20.54	0.00	2.503	7.96	1.74	6.9	92.7	0.4	-0.28	0.32	0.73	0.80	1.54	11291	1114	3	115	0	0	0	logfile
✔	8J9Y	36119	2024-11-16	2023-05-05	3.16	3.43	3.20	3.5	0.002	0.50	0.0	0.04	15.11	0.00	2.167	5.43	0.76	2.2	97.8	0.0	0.63	0.70	0.82	2.44	3.5	0.002	0.48	0.0	0.04	15.91	0.00	2.588	5.18	2.14	2.0	98.0	0.0	1.25	0.34	0.69	0.83	2.76	12154	1494	2	0	0	0	0	logfile
✔	8J9Z	36120	2024-11-16	2023-05-05	3.13	3.40	3.17	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.002	0.44	0.0	0.04	17.13	0.00	2.513	3.87	1.83	2.0	98.0	0.0	1.30	0.27	0.72	0.85	3.02	12154	1494	2	0	0	0	0	logfile
✔	8SR0	40716	2024-11-16	2023-05-05	3.53	3.69	3.52	3.6	0.005	0.80	2.0	0.05	14.06	0.01	2.139	9.79	0.34	8.0	92.0	0.0	-2.68	0.70	0.72	2.32	3.6	0.003	0.60	0.0	0.04	14.76	0.00	2.371	4.90	1.19	6.7	93.3	0.0	-2.18	0.47	0.70	0.73	2.09	11414	816	8	0	2	0	5426	logfile
✔	8SQU	40713	2024-11-15	2023-05-04	3.28	4.37	3.34	4.0	0.003	0.63	0.0	0.05	18.10	0.00	1.967	11.66	0.00	6.3	93.7	0.0	-0.59	0.75	0.62	1.04	4.0	0.003	0.73	0.0	0.04	19.90	0.00	2.039	12.72	1.33	5.1	94.9	0.0	-0.30	2.15	0.78	0.69	1.08	7761	841	5	41	1	0	0	logfile
✔	8J9o	36112	2024-11-14	2023-05-04	3.4	2.47	3.47	2.1	0.003	0.75	0.0	0.04	13.17	0.01	2.192	7.33	0.00	5.6	94.4	0.0	-1.72	0.73	0.72	2.33	2.1	0.003	0.68	0.0	0.04	15.85	0.01	2.109	9.27	3.97	6.2	93.8	0.0	-0.75	0.95	0.74	0.75	2.00	7441	999	4	0	0	0	0	logfile
✔	8SQH	40705	2024-11-17	2023-05-04	3.69	4.64	3.73	4.1	0.005	1.12	1.0	0.06	19.15	0.01	1.955	3.72	0.17	4.0	96.0	0.0	-1.51	0.91	0.86	2.12	4.1	0.003	0.58	0.0	0.04	19.41	0.00	1.937	7.80	1.65	3.5	96.5	0.0	0.96	1.92	0.92	0.87	1.78	14101	1341	7	147	4	0	0	logfile
✔	8J9P	36114	2024-11-18	2023-05-04	3.4	4.20	3.32	3.8	0.003	0.62	0.0	0.04	19.68	0.00	2.020	10.67	0.26	7.0	93.0	0.0	-1.61	0.86	0.82	1.76	3.8	0.004	0.68	0.0	0.05	19.94	0.00	1.910	8.72	4.56	8.5	91.5	0.0	-1.72	0.33	0.86	0.82	1.73	16013	1743	10	83	2	0	0	logfile
✔	8SQL	40709	2024-11-16	2023-05-04	3.1	3.40	3.18	3.5	0.005	0.75	0.0	0.04	14.01	0.00	1.781	7.73	0.16	3.0	97.0	0.0	0.23	0.65	0.80	3.07	3.4	0.004	0.65	0.0	0.04	15.86	0.00	2.499	7.16	2.06	3.2	96.8	0.0	1.32	1.14	0.57	0.77	1.89	11218	1396	3	0	15	0	0	logfile
✔	8SQB	40701	2024-11-17	2023-05-04	3.8	4.16	3.90	4.1	0.008	0.84	0.0	0.05	14.86	0.00	1.936	33.89	1.02	19.3	80.6	0.1	-5.64	0.69	0.70	1.35	4.0	0.003	0.73	0.0	0.04	16.71	0.00	2.461	11.09	3.86	9.6	90.4	0.0	-2.83	2.51	0.75	0.79	1.26	12991	1676	6	0	0	0	0	logfile
✔	8J9N	36111	2024-11-15	2023-05-04	3.5	2.42	3.55	2.2	0.004	0.87	0.0	0.05	13.71	0.01	2.245	6.81	0.00	6.0	94.0	0.0	-1.50	0.74	0.72	2.30	2.2	0.004	0.73	0.0	0.04	16.10	0.00	2.527	9.10	3.21	6.2	93.8	0.0	-0.70	0.40	0.74	0.73	2.14	8483	1107	5	0	0	0	0	logfile
✔	8SPQ	40681	2024-11-17	2023-05-03	3.26	3.88	3.41	3.6	0.005	0.94	0.0	0.05	19.59	0.01	2.037	4.86	0.33	2.5	97.5	0.0	-1.26	0.84	0.86	2.37	3.6	0.004	0.58	0.0	0.04	19.37	0.00	1.878	6.26	1.57	2.9	97.1	0.0	0.82	1.58	0.85	0.88	2.36	14147	1341	7	149	4	0	0	logfile
✔	8J9G	36095	2024-11-15	2023-05-03	3.5	4.24	3.47	4.0	0.003	0.52	0.0	0.04	19.06	0.00	1.995	16.89	0.25	5.7	94.3	0.0	-1.46	0.82	0.74	1.02	4.0	0.003	0.72	0.0	0.05	19.54	0.00	1.934	15.60	3.86	7.2	92.8	0.0	-1.24	0.52	0.82	0.73	1.11	7868	898	5	24	1	0	0	logfile
✔	8SPR	40682	2024-11-18	2023-05-03	3.9	4.25	3.99	4.1	0.007	0.88	0.0	0.05	15.12	0.01	2.032	21.51	0.32	17.6	82.2	0.2	-5.91	0.74	0.82	2.09	4.1	0.003	0.72	0.0	0.04	16.61	0.00	2.449	10.54	2.27	9.7	90.2	0.1	-2.73	1.22	0.72	0.79	1.33	15032	1932	6	0	0	0	0	logfile
✔	8J9K	36110	2024-11-14	2023-05-03	3.5	3.73	3.69	3.9	0.004	0.76	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.004	0.68	0.0	0.04	15.65	0.00	2.496	7.26	3.10	6.2	93.6	0.2	-1.46	0.44	0.77	0.80	2.37	4284	590	3	0	0	0	0	logfile
✔	8SPW	40688	2024-11-20	2023-05-03	3.5	3.84	3.66	3.9	0.003	0.61	0.0	0.04	13.74	0.00	1.846	6.47	2.11	2.6	97.4	0.0	-0.04	0.70	0.68	1.14	3.9	0.005	0.90	2.0	0.05	16.68	0.01	1.906	10.94	2.89	4.0	96.0	0.0	-0.48	1.54	0.70	0.72	0.78	21960	2835	11	0	11	0	0	logfile
✔	8SPS	40683	2024-11-18	2023-05-03	3.0	3.64	3.06	3.4	0.008	0.88	3.0	0.05	27.01	0.01	0.574	10.67	0.53	4.6	95.3	0.1	-0.87	0.84	0.82	2.70	3.4	0.005	0.71	0.0	0.04	26.96	0.00	2.444	9.48	2.67	4.6	95.4	0.0	1.33	0.69	0.85	0.86	2.51	16515	1334	14	294	0	0	0	logfile
✔	8SPU	40686	2024-11-18	2023-05-03	2.8	3.51	2.94	3.2	0.008	0.91	3.0	0.05	27.15	0.01	1.874	10.56	0.47	4.4	95.6	0.1	-0.88	0.87	0.86	3.01	3.2	0.008	0.72	0.0	0.04	27.32	0.01	2.431	7.47	2.70	4.7	95.3	0.0	1.54	1.63	0.86	0.88	3.10	16181	1285	13	298	0	0	0	logfile
✔	8J8L	36073	2024-11-14	2023-05-02	3.56	4.58	3.58	4.1	0.004	0.69	0.0	0.06	17.56	0.02	2.207	9.58	0.89	4.5	95.5	0.0	0.16	0.67	0.82	1.57	4.1	0.003	0.72	0.0	0.04	16.03	0.00	2.561	8.56	1.27	3.7	96.3	0.0	1.33	0.55	0.67	0.83	1.60	7361	933	7	0	8	0	0	logfile

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