Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SPB	40678	2024-11-14	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.003	0.68	0.0	0.04	18.08	0.00	2.481	11.23	4.34	6.7	93.2	0.1	-1.11	0.98	0.48	0.75	1.02	6726	828	6	0	0	0	0	logfile
✔	8J8R	36078	2024-11-17	2023-05-02	2.9	3.08	2.99	3.1	0.004	0.64	0.0	0.04	15.50	0.00	2.199	6.24	2.26	4.0	96.0	0.0	0.97	0.73	0.82	3.14	3.1	0.003	0.59	0.0	0.04	15.93	0.00	2.499	4.66	4.12	4.2	95.8	0.0	0.73	0.29	0.73	0.83	3.07	13424	1733	12	0	0	0	0	logfile
✔	8J8Z	36082	2024-11-15	2023-05-02	3.4	3.65	3.51	3.7	0.006	0.73	0.0	0.05	14.13	0.00	2.118	7.54	0.86	6.7	93.3	0.0	-0.49	0.78	0.81	3.58	3.7	0.004	0.66	0.0	0.04	15.34	0.00	2.555	6.20	2.80	4.5	95.5	0.0	-0.06	0.41	0.78	0.81	2.46	8722	1142	8	0	0	0	0	logfile
✔	8J8M	36074	2024-11-14	2023-05-02	3.58	4.41	3.60	4.1	0.005	0.68	0.0	0.05	20.77	0.02	2.203	8.97	0.89	4.7	95.3	0.0	0.67	0.65	0.79	1.13	4.1	0.003	0.71	0.0	0.04	17.67	0.00	2.399	7.62	0.89	4.6	95.4	0.0	1.46	0.49	0.65	0.82	0.89	7362	933	7	0	8	0	0	logfile
✔	8J8V	36081	2024-11-15	2023-05-02	3.22	3.39	3.26	3.4	0.005	0.72	0.0	0.05	13.27	0.00	2.228	4.92	0.98	5.1	94.9	0.0	0.23	0.76	0.81	3.25	3.4	0.004	0.61	0.0	0.04	14.65	0.00	2.509	4.92	2.44	5.7	94.3	0.0	0.30	1.14	0.79	0.84	3.15	9437	1205	8	0	0	0	0	logfile
✔	8J92	36085	2024-11-16	2023-05-02	2.9	2.59	2.97	3.0	0.004	0.58	0.0	0.04	28.06	0.00	2.259	7.78	0.00	1.2	98.8	0.0	2.70	0.72	0.77	2.86	2.9	0.004	0.57	0.0	0.03	28.70	0.00	2.553	6.62	3.05	1.4	98.6	0.0	2.59	1.63	0.77	0.84	3.15	12003	749	10	298	0	0	0	logfile
✔	8J91	36084	2024-11-15	2023-05-02	2.9	2.55	2.91	3.0	0.011	1.55	0.0	0.07	26.62	0.02	1.942	5.87	0.18	1.2	98.8	0.0	1.45	0.68	0.76	3.69	2.9	0.004	0.61	0.0	0.04	28.55	0.00	2.470	6.86	1.26	1.7	98.3	0.0	2.40	0.62	0.73	0.83	3.18	9944	678	10	226	0	0	0	logfile
✔	8J90	36083	2024-11-17	2023-05-02	4.71	3.65	4.45	3.6	0.005	0.84	0.0	0.05	24.02	0.01	1.534	23.92	0.30	4.3	95.7	0.0	-0.16	0.73	0.67	—	3.6	0.003	0.71	0.0	0.04	24.79	0.01	2.318	14.99	0.00	3.5	96.3	0.2	0.33	2.39	0.74	0.70	—	13881	1168	11	222	0	0	0	logfile
✔	8SPA	40677	2024-11-13	2023-05-02	3.0	3.73	2.75	3.7	0.006	0.75	0.0	0.04	10.82	0.00	2.614	9.26	0.00	4.3	95.7	0.0	-3.14	0.49	0.82	5.78	4.1	0.004	0.70	0.0	0.04	15.19	0.00	2.591	8.70	4.76	5.1	94.9	0.0	-2.86	1.82	0.51	0.86	4.66	1870	245	5	0	0	0	0	logfile
✔	8J8L	36073	2024-11-14	2023-05-02	3.56	4.58	3.58	4.1	0.004	0.69	0.0	0.06	17.56	0.02	2.207	9.58	0.89	4.5	95.5	0.0	0.16	0.67	0.82	1.57	4.1	0.003	0.72	0.0	0.04	16.03	0.00	2.561	8.56	1.27	3.7	96.3	0.0	1.33	0.55	0.67	0.83	1.60	7361	933	7	0	8	0	0	logfile
✔	8J8B	36066	2024-11-17	2023-05-01	2.43	3.24	2.54	3.1	0.002	0.41	0.0	0.04	9.83	0.00	2.210	5.68	0.15	3.4	96.6	0.0	1.04	0.81	0.87	3.99	3.0	0.003	0.54	0.0	0.04	12.78	0.00	2.571	3.53	0.23	4.6	95.4	0.0	0.70	1.23	0.81	0.88	3.79	12330	1518	2	0	0	0	0	logfile
✔	8J87	36062	2024-11-15	2023-05-01	3.42	4.18	3.44	3.5	0.002	0.54	0.0	0.04	10.98	0.00	2.196	7.33	0.00	3.7	96.3	0.0	-0.40	0.79	0.59	0.98	3.5	0.002	0.59	0.0	0.04	13.64	0.00	2.527	9.63	1.54	5.4	94.6	0.0	0.34	0.99	0.81	0.63	0.52	7846	954	2	0	0	0	0	logfile
✔	8SP0	40672	2024-11-18	2023-05-01	3.33	2.29	3.41	2.1	0.003	0.53	0.0	0.04	17.61	0.00	1.710	7.29	0.00	5.6	94.4	0.0	-0.53	0.70	0.67	2.53	2.1	0.003	0.58	0.0	0.04	18.98	0.00	1.956	6.37	1.76	5.7	94.3	0.0	-0.45	0.40	0.70	0.68	2.04	16270	1776	10	82	2	0	0	logfile
✔	8J8A	36065	2024-11-17	2023-05-01	2.51	3.34	2.59	3.1	0.003	0.50	0.0	0.04	12.92	0.00	2.197	7.41	0.08	2.0	98.0	0.0	1.03	0.81	0.85	3.53	3.1	0.003	0.57	0.0	0.04	14.65	0.00	2.552	6.18	0.91	2.8	97.2	0.0	0.91	1.93	0.81	0.86	3.70	12222	1502	2	0	0	0	0	logfile
✔	8SP3	40673	2024-11-18	2023-05-01	3.52	2.50	3.58	2.2	0.003	0.62	1.0	0.04	17.32	0.01	1.632	8.08	0.00	5.1	94.9	0.0	-0.38	0.69	0.66	1.58	2.2	0.003	0.67	0.0	0.04	19.02	0.00	2.002	8.39	3.33	5.4	94.6	0.0	-0.60	1.15	0.70	0.67	1.44	16270	1776	10	82	2	0	0	logfile
✔	8J8J	36071	2024-11-14	2023-05-01	2.76	2.89	2.73	2.9	0.011	1.19	1.0	0.06	19.32	0.00	1.717	4.57	0.00	4.1	95.9	0.0	-2.54	0.65	0.84	2.59	2.9	0.003	0.61	0.0	0.04	17.74	0.00	2.000	3.57	1.79	2.7	97.3	0.0	1.86	0.47	0.65	0.85	2.83	6873	870	6	0	9	0	0	logfile
✔	8J8C	36067	2024-11-16	2023-05-01	2.69	3.48	2.80	3.3	0.002	0.42	0.0	0.04	8.08	0.00	2.250	4.72	0.48	4.6	95.4	0.0	0.89	0.81	0.87	4.37	3.3	0.003	0.56	0.0	0.04	11.96	0.00	2.537	6.44	1.59	4.4	95.6	0.0	0.88	1.30	0.80	0.86	3.81	11650	1434	2	0	0	0	0	logfile
✔	8J8H	36070	2024-11-14	2023-05-01	3.4	4.16	3.46	3.9	0.004	0.69	0.0	0.05	20.21	0.00	1.914	16.35	0.61	8.5	91.5	0.0	-1.54	0.82	0.77	1.20	3.9	0.003	0.70	0.0	0.05	20.51	0.00	1.929	12.99	3.95	7.8	92.2	0.0	-1.56	0.41	0.82	0.77	1.40	6868	738	5	39	1	0	0	logfile
✔	8oX6	17258	2024-11-14	2023-05-01	2.39	2.99	2.43	2.9	0.004	1.20	0.0	0.04	14.22	0.00	1.906	7.95	0.00	5.3	94.7	0.0	-0.40	0.62	0.74	2.74	2.9	0.003	0.95	0.0	0.04	15.62	0.00	2.070	9.24	2.40	4.9	95.1	0.0	0.39	0.51	0.54	0.70	2.63	7359	903	6	0	7	1	0	logfile
✔	8oXB	17263	2024-11-16	2023-05-01	2.99	3.42	3.04	3.4	0.003	0.58	0.0	0.04	14.73	0.01	1.992	6.25	0.00	3.8	96.2	0.0	-0.48	0.61	0.76	3.61	3.4	0.003	0.64	0.0	0.04	15.99	0.00	2.009	6.43	1.42	3.5	96.5	0.0	0.65	0.44	0.62	0.78	3.08	11137	1363	6	0	8	10	0	logfile

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