Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P0T	17337	2024-11-18	2023-05-10	2.65	2.76	2.65	2.7	0.004	0.63	0.0	0.05	13.92	0.00	1.840	11.98	1.21	2.1	97.9	0.0	0.11	0.67	0.86	4.52	2.7	0.006	0.71	0.0	0.05	17.17	0.01	2.410	18.29	2.40	2.1	97.9	0.0	0.16	0.86	0.69	0.88	4.17	47778	6130	32	0	4	0	0	logfile
✔	8P0A	17331	2024-11-14	2023-05-10	3.67	3.86	3.69	3.9	0.003	0.65	0.0	0.05	16.31	0.00	2.036	19.63	0.00	5.7	94.3	0.0	-1.96	0.67	0.69	1.79	3.9	0.003	0.77	0.0	0.05	17.83	0.00	2.035	17.64	2.91	6.4	93.6	0.0	-1.75	0.48	0.66	0.68	1.57	5764	718	5	0	4	0	0	logfile
✔	8oZM	17314	2024-11-15	2023-05-09	3.4	3.15	3.11	3.4	0.015	1.93	0.0	0.09	15.03	0.01	2.384	3.02	0.00	5.3	94.7	0.0	-4.75	0.37	0.76	3.25	3.3	0.003	0.57	0.0	0.04	16.23	0.00	2.606	1.54	1.72	1.7	98.3	0.0	1.87	1.61	0.49	0.87	2.25	8052	1050	6	0	0	0	0	logfile
✔	8oZL	17313	2024-11-14	2023-05-09	3.4	3.28	1.87	3.4	0.012	1.52	0.0	0.10	10.88	0.00	2.574	1.49	0.00	1.2	98.8	0.0	2.33	0.37	0.73	3.42	3.4	0.003	0.50	0.0	0.04	13.80	0.00	2.599	1.49	0.97	0.6	99.4	0.0	2.57	0.43	0.54	0.87	1.92	6675	870	5	0	0	0	0	logfile
✔	8ST3	40756	2024-11-18	2023-05-09	2.93	3.08	2.92	3.0	0.005	0.55	0.0	0.04	15.96	0.00	1.807	5.01	0.07	4.3	95.7	0.0	0.15	0.78	0.86	3.82	3.0	0.003	0.54	0.0	0.04	15.72	0.00	2.263	3.07	0.94	3.4	96.6	0.0	0.15	0.51	0.78	0.87	3.56	50327	3155	20	0	21	7	24962	logfile
✔	8JBX	36148	2024-11-16	2023-05-09	3.35	4.24	3.64	3.8	0.004	0.58	0.0	0.03	28.65	0.00	2.242	10.38	0.48	3.1	96.9	0.0	1.72	0.90	0.87	1.03	3.9	0.004	0.65	0.0	0.03	28.66	0.00	2.339	11.08	2.08	4.1	95.9	0.0	2.07	1.18	0.89	0.86	1.10	11881	750	10	290	0	0	0	logfile
✔	8JBV	36147	2024-11-14	2023-05-09	3.02	3.16	2.96	3.2	0.008	1.12	1.0	0.06	18.53	0.01	2.235	4.61	14.93	12.5	87.5	0.0	-3.31	0.72	0.75	3.18	3.1	0.003	0.64	0.0	0.05	16.21	0.00	2.345	6.12	5.33	7.4	92.6	0.0	-1.79	1.74	0.71	0.76	2.98	6624	824	4	0	0	0	0	logfile
✔	8oZC	17304	2024-11-14	2023-05-09	4.0	4.25	4.05	4.0	0.002	0.62	0.0	0.04	13.40	0.00	2.124	14.20	0.00	6.7	92.9	0.3	-1.97	0.70	0.62	—	4.1	0.003	0.77	0.0	0.04	16.05	0.00	2.400	15.94	3.18	7.8	92.0	0.2	-2.15	0.71	0.72	0.65	—	7478	913	2	0	0	0	0	logfile
✔	8oZD	17305	2024-11-18	2023-05-09	3.89	4.28	3.82	4.0	0.003	0.59	0.0	0.04	16.89	0.00	2.178	13.09	0.00	4.7	94.8	0.5	-0.29	0.77	0.74	0.95	4.0	0.005	0.76	0.0	0.05	18.35	0.00	2.391	16.44	2.32	5.5	94.2	0.2	-0.41	1.47	0.78	0.78	0.86	16001	1782	8	68	0	0	0	logfile
✔	8ST4	40757	2024-11-18	2023-05-09	2.35	2.44	2.34	2.4	0.004	0.58	0.0	0.05	15.89	0.00	1.956	4.13	0.03	3.5	96.5	0.0	0.04	0.78	0.82	4.20	2.4	0.003	0.55	0.0	0.04	15.42	0.00	2.202	2.54	1.08	3.6	96.4	0.0	0.26	1.15	0.76	0.85	4.10	50159	3143	22	0	18	7	24869	logfile
✔	8P00	17323	2024-11-18	2023-05-09	3.8	4.04	3.91	4.1	0.002	0.57	0.0	0.04	17.07	0.00	2.353	7.65	0.06	4.6	95.4	0.0	-0.53	0.77	0.83	1.66	4.1	0.005	0.63	0.0	0.04	17.37	0.00	2.522	7.16	5.44	8.4	91.6	0.0	-0.60	0.30	0.77	0.83	2.18	16992	2376	8	0	0	0	0	logfile
✔	8oZN	17315	2024-11-15	2023-05-09	3.5	3.24	3.30	3.4	0.015	2.02	0.0	0.09	15.49	0.01	2.254	3.77	0.12	8.5	91.5	0.0	-4.62	0.35	0.74	3.20	3.4	0.003	0.62	0.0	0.04	16.98	0.00	2.573	2.04	1.61	2.9	97.1	0.0	0.93	0.54	0.48	0.85	2.31	8030	1048	6	0	0	0	0	logfile
✔	8SSZ	40752	2024-11-19	2023-05-09	2.64	2.33	2.60	2.5	0.004	0.60	0.0	0.06	14.25	0.00	1.984	5.25	0.00	4.4	95.6	0.0	0.55	0.71	0.82	3.44	2.6	0.004	0.57	0.0	0.06	15.32	0.00	2.312	3.00	1.39	4.6	95.4	0.0	0.52	0.53	0.70	0.82	3.40	51441	3246	22	0	24	7	25319	logfile
✔	8ST0	40753	2024-11-19	2023-05-09	2.4	2.24	2.39	2.3	0.004	0.58	0.0	0.06	14.84	0.00	1.229	4.54	0.00	4.4	95.6	0.0	0.55	0.72	0.83	4.00	2.3	0.003	0.57	0.0	0.06	15.35	0.00	2.255	2.97	1.02	4.5	95.5	0.0	0.43	0.40	0.70	0.82	4.13	51354	3246	21	0	15	7	25323	logfile
✔	8SSB	40750	2024-11-19	2023-05-08	3.66	3.93	3.74	3.9	0.009	1.55	0.0	0.06	17.48	0.01	2.258	7.33	0.72	11.4	87.4	1.2	-5.92	0.67	0.77	1.98	3.8	0.004	0.88	0.0	0.05	17.47	0.01	2.403	15.69	3.27	10.3	89.7	0.0	-1.13	3.73	0.70	0.81	1.59	19048	2304	12	0	29	0	0	logfile
✔	8SS7	40746	2024-11-19	2023-05-08	2.76	2.92	2.87	3.0	0.022	1.64	0.0	0.36	22.55	0.01	2.252	6.95	1.45	5.7	93.8	0.5	-5.34	0.68	0.77	4.16	3.0	0.004	1.06	0.0	0.09	19.99	0.00	2.521	8.73	2.95	4.8	95.1	0.1	0.67	3.88	0.74	0.84	3.17	19437	2266	12	0	46	0	0	logfile
✔	8SS9	40748	2024-11-18	2023-05-08	2.72	2.88	2.72	2.9	0.014	1.36	0.0	0.23	17.97	0.01	2.329	4.43	0.36	3.9	95.8	0.3	-4.92	0.67	0.78	3.56	2.9	0.003	0.79	0.0	0.06	18.57	0.00	2.434	7.34	2.32	3.3	96.7	0.0	0.97	3.75	0.69	0.82	3.14	16319	1986	12	0	26	15	0	logfile
✔	8SS5	40744	2024-11-18	2023-05-08	3.56	3.87	3.72	3.8	0.006	1.22	0.0	0.06	11.20	0.01	2.029	3.90	0.24	10.6	88.3	1.1	-5.78	0.57	0.74	2.01	3.8	0.003	0.72	0.0	0.04	15.20	0.01	2.520	10.31	1.60	10.1	89.7	0.2	-1.22	2.42	0.61	0.73	1.56	15637	1998	5	0	1	0	0	logfile
✔	8JB5	36141	2024-11-19	2023-05-08	2.9	2.97	2.93	2.9	0.008	0.88	2.0	0.06	17.40	0.01	1.861	14.17	6.34	5.7	94.0	0.3	-1.73	0.68	0.81	2.82	2.9	0.002	0.58	0.0	0.05	17.66	0.00	2.036	5.85	2.49	4.4	95.5	0.0	0.50	1.22	0.69	0.86	2.59	19027	2355	2	0	1	0	0	logfile
✔	8SS4	40743	2024-11-19	2023-05-08	3.3	3.54	3.39	3.5	0.009	1.23	0.0	0.06	10.77	0.01	2.238	3.21	0.36	8.5	91.2	0.4	-5.98	0.61	0.78	3.04	3.5	0.004	0.69	0.0	0.04	14.35	0.00	2.535	6.97	3.15	7.5	92.3	0.2	-0.28	1.22	0.64	0.79	2.05	17978	2278	7	0	1	0	0	logfile

• ← previous
• Page 105 of 424
• next →