Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J8A	36065	2024-11-17	2023-05-01	2.51	3.34	2.59	3.1	0.003	0.50	0.0	0.04	12.92	0.00	2.197	7.41	0.08	2.0	98.0	0.0	1.03	0.81	0.85	3.53	3.1	0.003	0.57	0.0	0.04	14.65	0.00	2.552	6.18	0.91	2.8	97.2	0.0	0.91	1.93	0.81	0.86	3.70	12222	1502	2	0	0	0	0	logfile
✔	8J8H	36070	2024-11-14	2023-05-01	3.4	4.16	3.46	3.9	0.004	0.69	0.0	0.05	20.21	0.00	1.914	16.35	0.61	8.5	91.5	0.0	-1.54	0.82	0.77	1.20	3.9	0.003	0.70	0.0	0.05	20.51	0.00	1.929	12.99	3.95	7.8	92.2	0.0	-1.56	0.41	0.82	0.77	1.40	6868	738	5	39	1	0	0	logfile
✔	8J8B	36066	2024-11-17	2023-05-01	2.43	3.24	2.54	3.1	0.002	0.41	0.0	0.04	9.83	0.00	2.210	5.68	0.15	3.4	96.6	0.0	1.04	0.81	0.87	3.99	3.0	0.003	0.54	0.0	0.04	12.78	0.00	2.571	3.53	0.23	4.6	95.4	0.0	0.70	1.23	0.81	0.88	3.79	12330	1518	2	0	0	0	0	logfile
✔	8J8J	36071	2024-11-14	2023-05-01	2.76	2.89	2.73	2.9	0.011	1.19	1.0	0.06	19.32	0.00	1.717	4.57	0.00	4.1	95.9	0.0	-2.54	0.65	0.84	2.59	2.9	0.003	0.61	0.0	0.04	17.74	0.00	2.000	3.57	1.79	2.7	97.3	0.0	1.86	0.47	0.65	0.85	2.83	6873	870	6	0	9	0	0	logfile
✔	8J86	36061	2024-11-17	2023-04-30	3.22	3.47	3.26	3.4	0.002	0.52	0.0	0.04	17.00	0.00	1.849	11.79	0.00	10.3	89.7	0.0	-1.41	0.64	0.62	1.35	3.4	0.004	0.72	0.0	0.04	18.70	0.00	1.792	15.12	2.09	11.8	88.1	0.1	-2.34	1.06	0.66	0.66	1.56	13367	1552	6	35	3	0	0	logfile
✔	8J84	36059	2024-11-14	2023-04-30	3.3	4.04	3.29	3.9	0.002	0.58	0.0	0.04	17.27	0.00	2.166	15.78	4.31	5.6	94.4	0.0	-1.01	0.80	0.77	1.33	3.9	0.003	0.63	0.0	0.04	17.44	0.00	2.482	11.62	4.68	5.9	94.1	0.0	-0.98	0.33	0.80	0.77	1.00	7448	906	2	0	0	0	0	logfile
✔	8SoY	40671	2024-11-15	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.004	0.61	0.0	0.05	15.27	0.01	2.591	2.76	3.73	2.7	97.3	0.0	-0.10	0.26	0.70	0.83	1.69	10074	1422	6	0	0	0	0	logfile
✔	8J7Y	36053	2024-11-16	2023-04-28	3.4	3.79	3.40	3.7	0.002	0.50	0.0	0.04	13.14	0.00	1.914	7.04	0.16	3.1	96.9	0.0	1.40	0.75	0.80	1.82	3.7	0.003	0.68	0.0	0.04	15.05	0.00	2.156	7.31	1.22	3.3	96.7	0.0	1.13	0.69	0.78	0.88	2.59	11008	1426	8	0	2	0	0	logfile
✔	8oX0	17251	2024-11-16	2023-04-28	2.52	2.85	2.85	2.9	0.007	0.88	0.0	0.06	27.18	0.01	2.156	2.71	0.00	1.0	99.0	0.0	1.78	0.77	0.79	4.78	2.9	0.005	0.62	0.0	0.04	28.26	0.00	2.030	3.52	1.83	2.1	97.9	0.0	2.50	0.25	0.84	0.89	3.73	12271	787	20	290	0	57	0	logfile
✔	8J7X	36052	2024-11-16	2023-04-28	3.4	3.93	3.38	3.7	0.002	0.45	0.0	0.04	10.17	0.00	2.029	4.79	0.16	2.4	97.5	0.1	1.75	0.74	0.78	1.98	3.7	0.005	0.69	0.0	0.04	14.89	0.00	2.377	7.23	2.90	3.7	96.3	0.0	1.21	1.63	0.77	0.88	2.37	11136	1440	6	0	0	0	0	logfile
✔	8J80	36055	2024-11-16	2023-04-28	2.68	2.84	2.75	2.8	0.005	0.73	0.0	0.05	17.01	0.01	1.989	6.76	3.05	3.5	96.5	0.0	0.48	0.53	0.72	2.53	2.8	0.005	0.87	0.0	0.05	17.24	0.00	1.631	6.63	2.49	2.6	97.4	0.0	1.52	0.47	0.67	0.73	2.67	11172	1444	7	0	1	0	0	logfile
✔	8Soi	40658	2024-11-20	2023-04-28	4.2	3.78	—	3.6	0.003	0.60	0.0	0.04	15.47	0.00	2.090	9.52	0.09	3.2	96.7	0.1	1.61	0.66	0.64	—	3.6	0.003	0.55	0.0	0.03	14.27	0.00	2.250	7.10	0.00	3.5	96.4	0.2	1.88	0.53	0.66	0.62	—	20708	1276	4	0	0	0	10465	logfile
✔	8J7R	36046	2024-11-14	2023-04-28	3.7	3.03	3.63	3.4	0.010	1.34	0.0	0.13	24.43	0.00	2.220	9.29	6.85	2.5	97.5	0.0	-0.13	0.69	0.76	0.98	3.0	0.004	0.64	0.0	0.03	22.89	0.00	2.503	9.43	3.65	2.5	97.5	0.0	2.23	1.37	0.72	0.80	1.43	4034	238	3	97	3	1	0	logfile
✔	8SNX	40641	2024-11-17	2023-04-28	3.4	3.30	3.34	3.3	0.003	0.57	0.0	0.04	15.10	0.00	2.202	10.24	0.33	3.0	97.0	0.0	1.44	0.71	0.84	2.87	3.3	0.007	0.69	1.0	0.04	16.39	0.01	1.828	9.59	2.41	3.2	96.8	0.0	1.44	1.11	0.73	0.87	2.53	13741	1675	6	10	0	0	0	logfile
✔	8oX1	17252	2024-11-17	2023-04-28	2.7	3.00	2.89	3.0	0.009	1.05	1.0	0.06	26.00	0.01	2.326	5.33	0.00	1.8	98.2	0.0	0.87	0.82	0.89	4.59	3.0	0.004	0.57	0.0	0.03	27.18	0.00	2.481	5.45	1.57	1.8	98.2	0.0	2.92	0.90	0.83	0.90	3.46	13258	905	19	290	0	11	0	logfile
✔	8J7U	36049	2024-11-16	2023-04-28	3.12	3.20	3.07	3.1	0.004	0.83	0.0	0.05	15.33	0.01	1.982	8.65	1.88	3.7	96.3	0.0	0.27	0.60	0.75	2.50	3.1	0.007	0.78	0.0	0.05	16.02	0.01	2.010	11.62	4.49	3.9	96.1	0.0	0.49	0.50	0.65	0.68	2.10	11003	1423	8	0	2	0	0	logfile
✔	8oWJ	17238	2024-11-14	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.004	0.91	0.0	0.05	16.37	0.00	2.574	17.69	0.36	9.7	90.3	0.0	-3.30	1.91	0.49	0.72	3.13	2720	360	10	0	0	0	0	logfile
✔	8oWK	17239	2024-11-14	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.006	0.85	0.0	0.05	14.40	0.00	2.462	17.09	0.97	6.3	93.7	0.0	-3.39	1.71	0.49	0.74	6.86	3050	400	10	0	0	0	0	logfile
✔	8J7V	36050	2024-11-16	2023-04-28	2.79	2.88	2.79	2.8	0.004	0.73	0.0	0.05	16.71	0.01	2.208	7.08	1.54	3.3	96.7	0.0	0.39	0.62	0.79	2.92	2.8	0.003	0.70	0.0	0.04	16.96	0.00	2.539	8.36	2.75	2.8	97.2	0.0	1.14	0.35	0.73	0.80	3.09	11083	1432	6	0	0	0	0	logfile
✔	8oWE	17235	2024-11-14	2023-04-27	3.75	3.64	3.54	3.8	0.014	2.47	20.0	0.17	22.52	0.03	1.831	11.09	18.33	1.4	98.6	0.0	-2.67	0.41	0.73	5.00	3.7	0.003	0.81	0.0	0.05	18.24	0.00	2.593	13.52	6.33	7.4	92.6	0.0	-3.82	1.48	0.43	0.76	5.27	2940	385	10	0	0	0	0	logfile

• ← previous
• Page 106 of 419
• next →