Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SMW	40604	2024-11-17	2023-04-26	3.3	3.47	3.30	3.5	0.003	0.53	0.0	0.03	26.23	0.00	1.329	5.51	0.00	2.6	97.4	0.0	1.72	0.73	0.85	3.28	3.5	0.004	0.55	0.0	0.04	26.55	0.00	2.148	4.69	0.93	2.7	97.3	0.0	2.02	1.35	0.71	0.85	2.84	13998	1000	13	294	2	0	0	logfile
✔	8SN5	40613	2024-11-17	2023-04-26	3.9	4.01	3.84	3.9	0.003	0.57	0.0	0.03	25.64	0.00	1.329	9.43	0.11	2.8	97.2	0.0	2.26	0.85	0.85	1.02	3.9	0.003	0.66	0.0	0.04	26.58	0.00	2.104	9.65	2.16	3.5	96.5	0.0	1.78	1.42	0.85	0.85	0.92	14600	1076	14	294	2	0	0	logfile
✔	8SN3	40611	2024-11-17	2023-04-26	3.8	3.89	3.81	3.8	0.003	0.55	0.0	0.03	25.55	0.00	1.329	8.86	0.00	2.6	97.4	0.0	1.98	0.83	0.84	1.28	3.8	0.003	0.63	0.0	0.04	26.49	0.00	2.095	7.93	1.84	2.7	97.3	0.0	1.72	1.39	0.82	0.84	1.08	14612	1078	14	294	2	0	0	logfile
✔	8SN2	40610	2024-11-17	2023-04-26	3.6	3.75	3.64	3.8	0.003	0.53	0.0	0.03	25.92	0.00	1.329	7.23	0.00	1.8	98.2	0.0	2.22	0.75	0.83	1.35	3.7	0.004	0.62	0.0	0.04	27.06	0.00	2.136	6.25	1.99	3.9	96.1	0.0	1.69	0.38	0.72	0.84	1.04	13992	1000	13	294	2	0	0	logfile
✔	8SMZ	40607	2024-11-17	2023-04-26	3.2	3.42	3.24	3.4	0.004	0.57	0.0	0.04	26.57	0.00	1.330	5.43	0.00	2.8	97.2	0.0	1.15	0.73	0.84	3.11	3.4	0.004	0.56	0.0	0.04	26.73	0.00	2.180	4.41	0.58	2.4	97.6	0.0	1.64	0.20	0.70	0.84	2.64	13998	1000	13	294	2	0	0	logfile
✔	8SN0	40608	2024-11-17	2023-04-26	3.2	3.37	3.21	3.4	0.004	0.56	0.0	0.04	26.42	0.00	1.331	5.43	0.00	2.4	97.6	0.0	1.04	0.75	0.85	2.59	3.4	0.005	0.58	0.0	0.04	26.90	0.00	2.118	4.10	1.17	2.6	97.4	0.0	1.55	0.21	0.74	0.87	2.39	13989	1000	13	294	2	0	0	logfile
✔	8SN7	40615	2024-11-17	2023-04-26	3.7	3.83	3.62	3.7	0.004	0.57	0.0	0.04	25.76	0.00	1.330	7.72	0.00	3.2	96.8	0.0	1.83	0.84	0.86	1.03	3.7	0.003	0.62	0.0	0.04	26.60	0.00	2.082	7.57	1.73	3.3	96.7	0.0	1.90	0.39	0.84	0.87	0.84	14600	1076	14	294	2	0	0	logfile
✔	8J6L	36007	2024-11-15	2023-04-26	3.05	2.91	2.93	3.1	0.003	0.62	0.0	0.04	15.24	0.00	2.061	8.53	0.21	3.8	96.1	0.2	0.65	0.50	0.63	1.73	3.0	0.003	0.67	0.0	0.04	16.22	0.00	2.521	9.44	4.14	3.9	96.0	0.1	0.39	0.73	0.63	0.77	2.10	8839	1138	6	0	1	0	0	logfile
✔	8J6Q	36011	2024-11-15	2023-04-26	2.6	2.86	2.68	2.8	0.005	0.69	0.0	0.05	13.24	0.00	2.191	7.12	0.00	2.7	97.3	0.0	0.40	0.69	0.81	4.26	2.8	0.003	0.57	0.0	0.04	15.50	0.00	2.491	7.67	1.51	3.0	97.0	0.0	0.87	0.39	0.68	0.84	4.14	9187	1151	6	0	5	1	0	logfile
✔	8SMV	40603	2024-11-15	2023-04-26	2.74	3.28	2.72	3.2	0.004	0.65	0.0	0.04	12.72	0.00	2.162	1.85	0.00	3.0	97.0	0.0	0.53	0.76	0.85	3.47	3.2	0.004	0.64	0.0	0.05	15.67	0.00	2.403	4.06	2.62	3.1	96.9	0.0	0.82	1.30	0.72	0.88	2.83	8169	1034	6	0	1	0	0	logfile
✔	8J6J	36006	2024-11-15	2023-04-26	2.8	2.60	2.74	2.9	0.004	0.62	0.0	0.04	14.73	0.00	2.098	8.22	0.21	2.6	97.4	0.0	1.70	0.45	0.63	1.61	2.8	0.003	1.01	1.0	0.04	16.30	0.00	2.347	8.50	3.23	3.6	96.4	0.0	0.73	1.06	0.61	0.78	2.60	8979	1151	6	0	1	0	0	logfile
✔	8SMY	40606	2024-11-19	2023-04-26	3.2	3.41	3.24	3.4	0.003	0.54	0.0	0.03	26.40	0.01	1.330	5.54	0.00	1.9	98.1	0.0	1.40	0.73	0.85	3.28	3.4	0.003	0.56	0.0	0.04	26.72	0.00	2.194	3.44	1.99	2.8	97.2	0.0	1.46	0.18	0.73	0.86	2.85	13998	1000	13	294	2	0	0	logfile
✔	8SN9	40617	2024-11-17	2023-04-26	3.9	3.90	3.78	3.8	0.003	0.55	0.0	0.03	25.89	0.00	1.329	7.72	0.00	2.5	97.5	0.0	1.88	0.83	0.84	0.89	3.8	0.004	0.63	0.0	0.04	26.32	0.00	2.126	7.76	0.87	2.4	97.6	0.0	1.63	1.37	0.83	0.84	0.58	14591	1076	14	294	2	0	0	logfile
✔	8SN8	40616	2024-11-17	2023-04-26	3.7	3.84	3.67	3.7	0.003	0.54	0.0	0.03	25.62	0.00	1.331	8.31	0.00	2.1	97.9	0.0	2.06	0.84	0.86	0.82	3.7	0.004	0.62	0.0	0.04	26.53	0.00	2.094	7.38	3.03	3.2	96.8	0.0	1.75	0.35	0.83	0.85	0.80	14600	1076	14	294	2	0	0	logfile
✔	8SN6	40614	2024-11-17	2023-04-26	3.7	3.89	3.71	3.8	0.004	0.57	0.0	0.03	25.93	0.00	1.329	7.45	0.11	2.5	97.5	0.0	1.99	0.85	0.86	1.06	3.8	0.004	0.65	0.0	0.04	26.28	0.00	2.111	8.27	1.84	3.0	97.0	0.0	2.03	1.39	0.84	0.85	0.68	14600	1076	14	294	2	0	0	logfile
✔	8oUW	17204	2024-11-19	2023-04-25	3.75	3.90	3.25	3.5	0.006	0.91	0.0	0.05	14.71	0.01	2.008	0.19	0.38	2.0	98.0	0.0	0.31	0.81	0.65	1.53	3.4	0.003	0.65	0.0	0.04	16.19	0.00	1.912	5.99	1.00	2.7	97.3	0.0	1.33	0.91	0.89	0.82	1.33	53754	6564	25	67	13	0	0	logfile
✔	8J6D	36001	2024-11-15	2023-04-25	3.1	2.42	3.21	3.1	0.004	0.73	0.0	0.04	12.64	0.00	2.133	7.07	0.38	3.8	96.2	0.0	-1.02	0.77	0.76	3.05	3.1	0.003	0.65	0.0	0.04	14.72	0.00	2.527	7.45	2.54	4.1	95.9	0.0	0.02	1.24	0.77	0.76	2.12	8149	1123	6	0	0	0	0	logfile
✔	8oUY	17205	2024-11-17	2023-04-25	3.4	2.97	3.46	3.3	0.002	0.52	0.0	0.04	17.65	0.00	1.811	4.62	0.00	4.5	95.5	0.0	-0.78	0.71	0.78	2.26	3.3	0.004	0.56	0.0	0.04	17.38	0.00	1.718	4.01	1.74	5.8	94.2	0.0	-0.50	1.14	0.71	0.78	2.14	14695	925	7	0	6	0	7380	logfile
✔	8J6F	36003	2024-11-14	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.004	0.73	0.0	0.04	15.98	0.01	2.563	13.00	3.19	9.2	90.8	0.0	-2.25	0.40	0.64	0.76	2.55	3870	496	5	0	1	0	0	logfile
✔	8oUZ	17206	2024-11-18	2023-04-25	2.2	2.43	2.22	2.4	0.003	0.56	0.0	0.04	16.59	0.00	1.833	4.42	1.00	3.4	96.6	0.0	1.04	0.75	0.79	4.38	2.4	0.003	0.55	0.0	0.04	16.56	0.00	1.769	3.88	2.00	3.2	96.8	0.0	0.75	0.48	0.73	0.78	4.13	14822	924	11	0	6	142	7373	logfile

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