Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J47	35972	2024-11-13	2023-04-19	2.5	2.05	2.32	2.2	0.004	0.74	0.0	0.06	18.27	0.00	2.518	4.26	2.38	9.3	90.7	0.0	-2.51	0.30	0.75	4.89	2.2	0.002	0.66	0.0	0.05	17.68	0.00	2.613	2.60	7.62	11.1	88.9	0.0	-3.15	0.47	0.44	0.85	4.56	2080	290	10	0	0	0	0	logfile
✔	8oSL	17160	2024-11-17	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.01	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	6.9	0.007	0.78	0.0	0.04	35.40	0.01	2.259	99.58	0.00	10.5	89.5	0.0	-0.63	3.47	0.87	0.82	—	13541	1441	14	294	0	0	301	logfile
✔	8oSK	17157	2024-11-17	2023-04-19	3.6	4.91	—	3.0	0.009	1.12	0.0	0.06	24.39	0.01	2.263	0.52	0.00	0.3	99.7	0.0	1.80	0.86	0.79	0.46	3.0	0.004	0.75	0.0	0.04	26.26	0.00	2.411	7.25	1.56	2.2	97.8	0.0	1.47	1.21	0.87	0.82	0.44	13995	1343	12	248	0	0	0	logfile
✔	8J46	35971	2024-11-13	2023-04-19	3.66	4.32	3.59	4.1	0.004	0.77	0.0	0.05	9.52	0.01	2.463	0.54	0.00	0.9	99.1	0.0	2.69	0.47	0.72	2.69	4.1	0.003	0.59	0.0	0.04	11.16	0.00	2.480	4.05	3.85	2.3	97.7	0.0	3.39	1.08	0.49	0.77	2.07	2158	362	1	0	0	0	0	logfile
✔	8J3W	35967	2024-11-15	2023-04-18	3.07	3.28	3.11	3.3	0.004	0.68	0.0	0.04	13.93	0.00	1.891	16.07	0.00	3.8	96.2	0.0	-1.89	0.58	0.76	2.14	3.3	0.004	0.64	0.0	0.04	15.50	0.00	2.527	9.73	1.69	1.4	98.6	0.0	0.52	1.24	0.56	0.78	1.35	9739	1218	2	0	1	0	0	logfile
✔	8oSG	17152	2024-11-17	2023-04-18	3.8	4.13	3.92	4.0	0.004	0.74	0.0	0.04	18.75	0.00	2.009	9.70	0.19	8.1	91.8	0.1	-1.30	0.80	0.83	0.89	4.0	0.003	0.65	0.0	0.04	18.73	0.00	1.993	6.42	3.95	6.4	93.6	0.0	-1.00	0.36	0.80	0.82	0.75	14536	1833	12	0	10	0	0	logfile
✔	8SK6	40556	2024-11-17	2023-04-18	2.96	3.57	3.01	3.4	0.002	0.44	0.0	0.04	8.10	0.00	2.218	5.79	0.86	0.4	99.6	0.0	0.87	0.84	0.88	4.80	3.4	0.005	0.61	0.0	0.04	12.68	0.00	2.515	5.40	1.15	1.4	98.6	0.0	0.81	0.46	0.83	0.88	4.30	12858	1686	6	0	0	0	0	logfile
✔	8oSH	17153	2024-11-14	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.47	0.00	2.431	3.78	0.00	14.2	85.8	0.0	-0.91	0.54	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	8SiY	40522	2024-11-17	2023-04-17	2.9	3.59	2.98	3.2	0.006	0.64	0.0	0.05	26.20	0.01	1.993	5.69	1.38	2.8	97.2	0.0	1.37	0.87	0.83	3.33	3.2	0.003	0.64	0.0	0.04	27.08	0.00	2.507	8.19	2.44	3.4	96.5	0.1	2.02	0.64	0.87	0.89	2.37	14844	1118	12	294	0	0	0	logfile
✔	8SiK	40508	2024-11-18	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.004	0.54	0.0	0.04	16.09	0.00	2.232	4.97	2.53	1.8	98.2	0.0	2.29	0.21	0.64	0.85	3.77	15832	1984	12	0	8	0	0	logfile
✔	8SiE	40507	2024-11-16	2023-04-16	2.7	2.88	2.78	2.9	0.005	0.67	0.0	0.17	21.89	0.01	1.491	5.47	0.19	3.7	96.3	0.0	1.29	0.63	0.84	2.81	2.9	0.003	0.54	0.0	0.04	16.08	0.00	2.385	5.09	1.91	3.6	96.4	0.0	1.40	0.33	0.62	0.86	2.66	10398	1226	4	0	38	0	0	logfile
✔	8J23	35943	2024-11-15	2023-04-14	3.2	2.25	3.17	2.1	0.002	0.57	2.0	0.06	17.34	0.01	2.116	7.78	0.43	3.3	96.5	0.2	0.73	0.74	0.74	1.18	2.1	0.004	0.63	0.0	0.04	17.31	0.01	2.583	8.45	4.53	3.8	96.2	0.0	0.59	1.65	0.75	0.76	1.96	8596	1101	5	0	0	0	0	logfile
✔	8J20	35940	2024-11-15	2023-04-14	3.2	2.23	3.26	2.1	0.006	0.71	2.0	0.06	17.90	0.00	2.197	10.83	0.62	4.4	95.0	0.5	0.12	0.74	0.73	1.15	2.0	0.004	0.72	0.0	0.05	18.03	0.00	2.460	11.25	6.35	5.4	94.2	0.4	-0.53	1.15	0.75	0.76	1.58	8832	1125	6	0	2	0	0	logfile
✔	8J28	35947	2024-11-14	2023-04-14	3.7	4.43	3.42	4.2	0.006	0.92	0.0	0.04	17.63	0.00	2.213	16.94	2.28	6.3	93.7	0.0	-1.56	0.53	0.75	0.95	4.3	0.004	0.93	0.0	0.05	18.58	0.00	2.336	14.74	4.18	4.0	96.0	0.0	-0.35	2.56	0.51	0.76	1.45	2499	315	5	0	1	0	0	logfile
✔	8J2G	35949	2024-11-14	2023-04-14	3.4	3.72	3.48	3.7	0.010	1.14	0.0	0.06	10.18	0.01	2.033	3.24	0.00	10.7	89.3	0.0	-6.39	0.59	0.79	3.09	3.7	0.003	0.75	0.0	0.04	14.38	0.00	2.584	2.65	2.17	7.5	92.5	0.0	-2.63	1.69	0.55	0.78	2.37	5058	650	2	0	0	0	0	logfile
✔	8oRM	17129	2024-11-14	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.69	0.01	2.606	4.68	1.62	1.1	98.7	0.2	1.66	0.21	0.70	0.82	5.77	5341	632	7	0	2	210	0	logfile
✔	8oRH	17125	2024-11-16	2023-04-14	4.2	2.91	3.19	3.0	0.004	0.56	0.0	0.05	13.57	0.00	2.232	5.54	0.00	4.1	95.9	0.0	-0.23	0.50	0.79	—	3.0	0.003	0.56	0.0	0.05	13.37	0.00	2.597	4.34	0.00	3.9	96.1	0.0	0.33	1.12	0.50	0.79	—	10124	1298	4	0	2	0	0	logfile
✔	8SHS	40493	2024-11-18	2023-04-14	2.66	3.50	2.78	3.3	0.002	0.42	0.0	0.04	8.94	0.00	2.309	5.02	0.50	1.2	98.8	0.0	1.56	0.85	0.81	3.60	3.3	0.003	0.49	0.0	0.04	13.66	0.00	2.491	3.09	0.32	1.9	98.1	0.0	1.61	0.46	0.78	0.84	3.63	15156	1976	4	0	0	0	0	logfile
✔	8J21	35941	2024-11-15	2023-04-14	3.3	2.25	3.32	2.0	0.002	0.62	0.0	0.04	17.79	0.00	2.140	9.82	0.42	4.7	94.8	0.5	0.09	0.73	0.72	1.69	2.0	0.004	0.71	0.0	0.04	18.20	0.00	2.457	11.63	6.97	5.4	94.2	0.4	-0.54	1.14	0.75	0.76	2.27	8803	1125	6	0	1	0	0	logfile
✔	8J27	35946	2024-11-13	2023-04-14	3.6	4.45	3.51	4.3	0.006	0.90	0.0	0.05	17.19	0.00	2.233	25.16	4.72	6.8	93.2	0.0	-1.70	0.53	0.72	0.93	4.3	0.003	0.88	0.0	0.04	18.12	0.00	2.487	12.48	3.94	7.2	92.8	0.0	-0.52	1.41	0.51	0.76	1.17	2393	307	5	0	1	0	0	logfile

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