Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SiB	40505	2024-11-14	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.90	0.0	0.05	15.76	0.00	2.459	9.52	2.33	13.1	86.2	0.7	-1.44	2.03	0.71	0.83	2.66	3544	454	1	0	0	0	0	logfile
✔	8J2F	35948	2024-11-14	2023-04-14	3.07	3.19	2.97	3.2	0.005	1.21	2.0	0.09	10.87	0.00	2.473	2.70	0.63	1.6	98.4	0.0	3.43	0.66	0.86	4.25	3.2	0.004	0.59	0.0	0.04	14.91	0.00	2.462	3.84	2.19	1.6	98.4	0.0	2.50	1.84	0.68	0.90	3.98	6164	768	4	0	6	0	0	logfile
✔	8J2M	35950	2024-11-14	2023-04-14	3.4	4.10	3.44	4.0	0.009	1.36	10.0	0.08	18.83	0.01	2.121	8.77	2.91	3.3	96.7	0.0	-2.01	0.59	0.75	2.41	4.0	0.003	0.85	0.0	0.04	17.66	0.00	2.493	12.49	4.07	2.3	97.7	0.0	1.34	1.40	0.52	0.79	1.64	6574	848	4	0	2	0	0	logfile
✔	8J24	35944	2024-11-15	2023-04-14	2.6	2.10	2.66	1.8	0.002	0.55	2.0	0.06	18.15	0.00	2.131	6.42	3.11	1.9	97.9	0.2	1.18	0.80	0.79	2.75	1.6	0.002	0.56	0.0	0.04	18.15	0.00	2.417	6.31	3.76	3.6	96.4	0.0	1.29	1.10	0.81	0.82	2.80	8626	1105	6	0	1	0	0	logfile
✔	8oRJ	17127	2024-11-14	2023-04-14	3.3	4.22	3.35	3.9	0.012	1.75	1.0	0.10	16.33	0.01	1.914	5.39	3.16	2.3	97.7	0.0	-0.70	0.86	0.78	2.17	3.8	0.003	0.75	0.0	0.05	17.28	0.00	2.034	11.72	2.48	2.3	97.7	0.0	0.18	2.31	0.85	0.83	1.60	6930	882	4	0	4	0	0	logfile
✔	8oRE	17121	2024-11-14	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.65	0.0	0.05	17.80	0.00	2.515	1.38	1.49	6.7	93.3	0.0	-2.05	3.45	0.36	0.80	4.68	3615	231	3	0	0	0	1845	logfile
✔	8J1J	35926	2024-11-16	2023-04-13	2.91	2.61	2.94	2.8	0.004	0.53	0.0	0.04	18.68	0.00	2.228	6.59	1.43	2.9	96.9	0.3	-1.23	0.84	0.85	3.09	2.8	0.004	0.60	0.0	0.04	20.21	0.00	2.502	7.37	1.71	3.6	96.1	0.3	0.75	0.55	0.84	0.85	2.92	9793	811	8	151	4	0	0	logfile
✔	8J1P	35929	2024-11-16	2023-04-13	3.31	3.00	3.43	3.3	0.003	0.81	0.0	0.05	12.57	0.00	2.158	15.88	0.00	5.2	94.7	0.1	-1.52	0.79	0.70	0.78	3.3	0.003	0.72	0.0	0.04	15.59	0.00	2.487	11.61	1.83	5.0	94.9	0.1	-0.69	1.18	0.79	0.71	0.42	11523	1458	4	0	0	0	0	logfile
✔	8SGW	40470	2024-11-16	2023-04-13	2.5	2.88	2.51	2.8	0.004	0.69	0.0	0.24	21.89	0.01	1.492	13.07	0.00	5.0	95.0	0.0	0.83	0.64	0.77	3.15	2.8	0.003	0.65	0.0	0.04	16.24	0.00	2.370	10.30	1.82	6.0	93.9	0.2	1.13	2.15	0.60	0.77	2.33	10414	1226	4	0	38	0	0	logfile
✔	8SH3	40479	2024-11-16	2023-04-13	2.8	3.07	2.82	3.1	0.004	0.65	0.0	0.17	21.60	0.01	2.186	10.80	0.00	4.8	95.2	0.0	1.02	0.59	0.79	4.25	3.1	0.003	0.60	0.0	0.04	15.62	0.00	2.387	9.32	2.01	4.8	95.0	0.2	1.09	0.38	0.61	0.82	3.88	10386	1226	4	0	38	0	0	logfile
✔	8J1R	35931	2024-11-14	2023-04-13	3.52	3.54	3.52	3.4	0.004	0.57	0.0	0.04	12.84	0.00	2.200	14.16	6.09	4.7	95.2	0.1	0.26	0.79	0.74	1.50	3.3	0.003	0.66	0.0	0.04	14.99	0.00	2.494	10.99	3.04	3.6	96.4	0.0	0.29	1.16	0.79	0.73	0.55	6497	823	2	0	0	0	0	logfile
✔	8SGT	40467	2024-11-14	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.008	0.74	0.0	0.05	15.65	0.01	2.128	11.83	2.22	4.0	96.0	0.0	0.38	1.49	0.59	0.76	1.68	7119	918	4	0	6	0	0	logfile
✔	8SGR	40465	2024-11-16	2023-04-13	2.84	3.51	2.98	3.3	0.006	0.61	0.0	0.04	11.94	0.00	2.143	5.61	0.64	2.0	98.0	0.0	2.16	0.80	0.78	4.42	3.4	0.004	0.51	0.0	0.04	13.91	0.00	2.565	4.63	0.24	2.6	97.4	0.0	2.52	0.93	0.78	0.88	3.85	12252	1572	8	0	4	0	0	logfile
✔	8SHC	40483	2024-11-16	2023-04-13	3.0	3.12	2.90	3.2	0.005	0.70	0.0	0.17	21.90	0.01	2.197	6.87	0.19	5.9	94.1	0.0	1.04	0.67	0.78	2.59	3.2	0.003	0.61	0.0	0.04	16.95	0.01	2.368	5.03	2.49	5.7	94.3	0.0	1.45	0.41	0.67	0.82	2.61	10464	1226	4	0	40	0	0	logfile
✔	8SH2	40477	2024-11-19	2023-04-13	3.74	3.89	3.81	3.9	0.006	1.20	0.0	0.06	13.35	0.01	2.321	14.58	0.35	4.8	95.2	0.0	-2.82	0.58	0.42	0.91	3.9	0.004	0.83	0.0	0.05	15.52	0.00	2.452	19.72	2.84	5.5	94.5	0.0	-1.88	1.22	0.64	0.50	1.07	18038	2254	12	0	0	0	0	logfile
✔	8SH7	40480	2024-11-14	2023-04-13	2.8	3.11	2.79	3.1	0.008	0.92	0.0	0.06	14.91	0.01	1.939	2.16	0.00	2.7	97.3	0.0	-1.35	0.54	0.89	3.74	3.1	0.003	0.59	0.0	0.04	17.10	0.00	2.101	3.36	1.77	1.5	98.5	0.0	0.69	1.49	0.55	0.88	2.90	6819	862	4	1	2	0	0	logfile
✔	8SGZ	40474	2024-11-19	2023-04-13	3.2	2.69	3.12	3.1	0.004	0.79	0.0	0.05	13.30	0.00	2.154	15.29	1.21	7.4	92.6	0.1	-1.59	0.68	0.74	2.17	2.9	0.002	0.59	0.0	0.04	15.45	0.00	2.532	6.94	2.03	4.1	95.9	0.0	-0.67	1.35	0.72	0.82	2.11	53430	6876	18	0	6	0	0	logfile
✔	8oRF	17122	2024-11-14	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.005	0.63	0.0	0.05	16.00	0.00	2.415	3.44	1.89	5.4	94.6	0.0	-3.53	1.09	0.38	0.82	5.36	4653	303	3	0	0	0	2382	logfile
✔	8oRG	17123	2024-11-14	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.004	0.61	0.0	0.05	16.55	0.00	2.396	1.01	2.63	1.6	98.4	0.0	-2.90	1.13	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	8oRD	17120	2024-11-17	2023-04-13	3.9	4.04	3.89	4.1	0.005	0.92	0.0	0.05	17.82	0.01	2.109	19.32	0.58	2.3	97.7	0.0	-0.41	0.55	0.81	1.69	4.0	0.004	0.82	0.0	0.05	18.01	0.01	2.463	14.86	4.50	2.5	97.5	0.0	0.14	1.56	0.56	0.82	1.50	14590	1850	10	0	10	0	0	logfile

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