Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SH3	40479	2024-11-16	2023-04-13	2.8	3.07	2.82	3.1	0.004	0.65	0.0	0.17	21.60	0.01	2.186	10.80	0.00	4.8	95.2	0.0	1.02	0.59	0.79	4.25	3.1	0.003	0.60	0.0	0.04	15.62	0.00	2.387	9.32	2.01	4.8	95.0	0.2	1.09	0.38	0.61	0.82	3.88	10386	1226	4	0	38	0	0	logfile
✔	8SH7	40480	2024-11-14	2023-04-13	2.8	3.11	2.79	3.1	0.008	0.92	0.0	0.06	14.91	0.01	1.939	2.16	0.00	2.7	97.3	0.0	-1.35	0.54	0.89	3.74	3.1	0.003	0.59	0.0	0.04	17.10	0.00	2.101	3.36	1.77	1.5	98.5	0.0	0.69	1.49	0.55	0.88	2.90	6819	862	4	1	2	0	0	logfile
✔	8SGR	40465	2024-11-16	2023-04-13	2.84	3.51	2.98	3.3	0.006	0.61	0.0	0.04	11.94	0.00	2.143	5.61	0.64	2.0	98.0	0.0	2.16	0.80	0.78	4.42	3.4	0.004	0.51	0.0	0.04	13.91	0.00	2.565	4.63	0.24	2.6	97.4	0.0	2.52	0.93	0.78	0.88	3.85	12252	1572	8	0	4	0	0	logfile
✔	8SGT	40467	2024-11-14	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.008	0.74	0.0	0.05	15.65	0.01	2.128	11.83	2.22	4.0	96.0	0.0	0.38	1.49	0.59	0.76	1.68	7119	918	4	0	6	0	0	logfile
✔	8J1R	35931	2024-11-14	2023-04-13	3.52	3.54	3.52	3.4	0.004	0.57	0.0	0.04	12.84	0.00	2.200	14.16	6.09	4.7	95.2	0.1	0.26	0.79	0.74	1.50	3.3	0.003	0.66	0.0	0.04	14.99	0.00	2.494	10.99	3.04	3.6	96.4	0.0	0.29	1.16	0.79	0.73	0.55	6497	823	2	0	0	0	0	logfile
✔	8SGK	40458	2024-11-14	2023-04-12	3.7	3.91	3.67	3.8	0.002	0.56	0.0	0.04	17.41	0.00	2.269	9.42	0.26	0.4	99.6	0.0	0.76	0.81	0.78	0.79	3.8	0.004	0.95	1.0	0.05	17.74	0.00	2.303	9.16	2.71	1.1	98.9	0.0	1.11	0.92	0.82	0.79	1.07	7622	986	4	0	2	0	0	logfile
✔	8SGJ	40457	2024-11-14	2023-04-12	3.1	3.60	3.20	3.5	0.004	0.70	0.0	0.05	12.73	0.01	1.994	5.39	0.00	2.6	97.4	0.0	-0.02	0.64	0.84	3.47	3.5	0.003	0.55	0.0	0.04	14.94	0.00	2.213	4.60	2.06	2.1	97.8	0.1	1.21	0.97	0.55	0.81	3.09	7667	982	4	0	9	1	0	logfile
✔	8SGP	40463	2024-11-16	2023-04-12	2.69	3.37	2.71	3.2	0.004	0.51	0.0	0.04	11.58	0.00	2.171	4.08	1.33	1.8	98.2	0.0	2.13	0.82	0.80	5.29	3.2	0.002	0.47	0.0	0.04	13.86	0.00	2.599	5.32	1.58	2.1	97.9	0.0	2.22	0.47	0.80	0.90	4.65	12100	1540	8	0	4	0	0	logfile
✔	8oQi	17111	2024-11-14	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.003	0.58	0.0	0.05	17.02	0.00	2.641	3.75	4.21	2.2	97.8	0.0	-1.72	1.22	0.52	0.87	4.11	3810	560	10	0	0	0	0	logfile
✔	8J1E	35920	2024-11-15	2023-04-12	3.84	3.91	3.88	3.9	0.004	0.79	0.0	0.05	14.02	0.01	2.310	5.99	0.00	1.9	98.1	0.0	0.90	0.70	0.82	2.42	3.9	0.003	0.59	0.0	0.04	15.37	0.00	2.617	4.04	0.77	2.0	98.0	0.0	1.54	0.92	0.70	0.82	2.19	7590	954	6	0	9	0	0	logfile
✔	8J1A	35915	2024-11-15	2023-04-12	3.24	3.58	3.34	3.6	0.004	0.62	0.0	0.04	15.32	0.00	1.976	5.61	0.63	3.8	96.2	0.0	0.36	0.61	0.82	2.87	3.6	0.003	0.56	0.0	0.04	16.04	0.00	2.527	5.10	1.99	3.2	96.8	0.0	0.38	0.39	0.56	0.81	2.69	8845	1137	5	0	0	0	0	logfile
✔	8J19	35914	2024-11-15	2023-04-12	3.23	3.65	3.37	3.6	0.004	0.64	1.0	0.04	15.95	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.002	0.57	0.0	0.04	16.38	0.00	2.558	5.88	2.85	1.8	98.2	0.0	0.76	0.93	0.62	0.84	2.76	8801	1129	6	0	1	0	0	logfile
✔	8oR2	17115	2024-11-18	2023-04-12	3.2	2.36	3.12	3.0	0.007	0.76	13.0	0.06	14.65	0.00	1.805	7.23	1.24	3.3	96.7	0.0	1.99	0.72	0.66	0.70	2.0	0.004	0.68	0.0	0.04	16.73	0.00	2.031	6.57	2.90	3.2	96.8	0.0	0.98	1.24	0.78	0.75	1.66	16558	2072	5	0	3	0	0	logfile
✔	8J18	35913	2024-11-15	2023-04-12	2.89	3.40	3.16	3.3	0.004	0.71	0.0	0.05	15.96	0.00	2.181	6.45	1.26	4.0	96.0	0.0	-0.18	0.56	0.78	3.08	3.3	0.003	0.66	0.0	0.04	16.59	0.00	2.477	8.20	2.52	4.0	95.9	0.1	0.21	0.57	0.56	0.79	2.74	8860	1137	6	0	1	0	0	logfile
✔	8oQ5	17105	2024-11-14	2023-04-11	2.4	2.13	2.42	2.3	0.015	2.05	0.0	0.10	14.25	0.01	2.517	1.55	0.00	3.0	97.0	0.0	-5.16	0.77	0.77	4.67	2.3	0.004	0.82	0.0	0.04	19.13	0.00	2.426	11.35	1.78	1.8	98.2	0.0	-3.64	1.29	0.83	0.86	5.35	6528	816	12	0	0	0	0	logfile
✔	8oQ7	17107	2024-11-17	2023-04-11	2.2	2.13	2.08	2.2	0.007	0.87	0.0	0.09	10.81	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.005	0.74	0.0	0.05	14.30	0.01	2.604	1.40	1.79	2.0	98.0	0.0	1.73	1.01	0.73	0.87	5.84	14702	1680	15	0	57	505	0	logfile
✔	8SG1	40450	2024-11-15	2023-04-11	2.94	3.40	3.06	3.4	0.005	0.89	2.0	0.06	13.73	0.01	2.235	6.41	1.78	2.3	97.7	0.0	0.06	0.52	0.80	3.35	3.4	0.002	0.58	0.0	0.04	15.06	0.00	2.588	4.31	2.20	2.8	97.2	0.0	0.71	0.36	0.54	0.81	2.97	8846	1127	7	0	3	0	0	logfile
✔	8SFJ	40443	2024-11-16	2023-04-11	3.6	4.77	3.67	4.0	0.005	1.19	0.0	0.07	22.09	0.01	2.182	7.41	0.22	2.3	97.7	0.0	-0.53	0.87	0.72	1.68	4.0	0.003	0.66	0.0	0.04	22.33	0.00	2.493	9.98	2.02	2.6	97.4	0.0	0.92	0.98	0.92	0.86	1.80	10207	1001	4	97	0	0	0	logfile
✔	8oQ8	17108	2024-11-17	2023-04-11	2.9	2.64	2.80	2.8	0.014	0.97	0.0	0.08	11.03	0.01	2.175	2.36	0.84	2.3	97.7	0.0	1.82	0.64	0.87	4.88	2.8	0.004	0.86	1.0	0.05	15.22	0.00	2.013	2.33	2.65	2.5	97.5	0.0	1.62	0.81	0.64	0.88	4.23	14432	1680	15	0	46	132	0	logfile
✔	8J0J	35904	2024-11-15	2023-04-11	2.7	2.79	2.72	2.7	0.005	0.70	0.0	0.06	16.09	0.00	2.238	9.99	1.25	1.6	98.4	0.0	-2.18	0.74	0.86	2.93	2.7	0.004	0.76	0.0	0.05	15.69	0.01	2.623	3.55	2.40	1.3	98.7	0.0	1.13	0.94	0.74	0.88	3.48	9138	1131	6	0	6	0	0	logfile

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