Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SFJ	40443	2024-11-16	2023-04-11	3.6	4.77	3.67	4.0	0.005	1.19	0.0	0.07	22.09	0.01	2.182	7.41	0.22	2.3	97.7	0.0	-0.53	0.87	0.72	1.68	4.0	0.003	0.66	0.0	0.04	22.33	0.00	2.493	9.98	2.02	2.6	97.4	0.0	0.92	0.98	0.92	0.86	1.80	10207	1001	4	97	0	0	0	logfile
✔	8oQ7	17107	2024-11-17	2023-04-11	2.2	2.13	2.08	2.2	0.007	0.87	0.0	0.09	10.81	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.005	0.74	0.0	0.05	14.30	0.01	2.604	1.40	1.79	2.0	98.0	0.0	1.73	1.01	0.73	0.87	5.84	14702	1680	15	0	57	505	0	logfile
✔	8SFR	40449	2024-11-16	2023-04-11	3.5	4.95	3.63	4.0	0.006	1.03	0.0	0.06	20.28	0.00	2.210	8.73	0.18	3.2	96.8	0.0	-0.36	0.91	0.88	1.56	4.0	0.003	0.65	0.0	0.04	20.16	0.00	2.508	9.42	2.44	3.1	96.9	0.0	1.30	0.34	0.91	0.87	1.51	12045	1240	4	92	0	0	0	logfile
✔	8SFN	40445	2024-11-17	2023-04-11	3.3	4.62	3.48	3.8	0.005	1.22	0.0	0.07	21.53	0.01	2.188	6.39	0.26	2.5	97.5	0.0	-1.30	0.84	0.66	1.31	3.8	0.004	0.67	0.0	0.04	21.62	0.00	2.475	13.79	2.83	2.9	97.1	0.0	0.69	0.52	0.90	0.84	1.10	12807	1302	4	104	0	0	0	logfile
✔	8SFo	40446	2024-11-17	2023-04-11	3.3	4.59	3.46	3.8	0.004	0.86	0.0	0.06	20.07	0.01	2.057	3.67	0.18	2.5	97.5	0.0	-0.41	0.88	0.80	2.87	3.8	0.003	0.58	0.0	0.04	20.15	0.00	1.224	7.33	0.99	2.8	97.2	0.0	2.38	1.05	0.93	0.87	2.67	12606	1240	5	119	2	0	0	logfile
✔	8J0J	35904	2024-11-15	2023-04-11	2.7	2.79	2.72	2.7	0.005	0.70	0.0	0.06	16.09	0.00	2.238	9.99	1.25	1.6	98.4	0.0	-2.18	0.74	0.86	2.93	2.7	0.004	0.76	0.0	0.05	15.69	0.01	2.623	3.55	2.40	1.3	98.7	0.0	1.13	0.94	0.74	0.88	3.48	9138	1131	6	0	6	0	0	logfile
✔	8SFQ	40448	2024-11-16	2023-04-11	3.5	4.90	3.55	4.0	0.005	1.11	0.0	0.07	20.08	0.01	2.220	6.61	0.72	2.0	98.0	0.0	0.23	0.89	0.80	1.78	4.0	0.004	0.64	0.0	0.04	19.99	0.00	2.436	10.84	1.99	1.6	98.4	0.0	2.10	0.48	0.91	0.87	1.82	12045	1240	4	92	0	0	0	logfile
✔	8SFi	40442	2024-11-16	2023-04-11	3.5	4.57	3.64	3.8	0.005	1.08	0.0	0.06	19.82	0.01	2.218	5.89	0.46	2.6	97.4	0.0	-1.06	0.85	0.73	1.89	3.8	0.005	0.67	0.0	0.04	19.74	0.00	2.485	12.14	2.01	3.3	96.6	0.1	1.64	0.64	0.90	0.88	1.77	11477	1227	4	70	0	0	0	logfile
✔	8SFH	40441	2024-11-17	2023-04-11	3.4	4.51	3.51	3.7	0.006	1.07	0.0	0.06	19.22	0.01	2.261	2.68	0.52	1.5	98.5	0.0	0.43	0.87	0.76	2.78	3.8	0.004	0.63	0.0	0.04	19.76	0.00	2.538	6.48	0.78	2.1	97.9	0.0	2.34	0.98	0.91	0.88	2.22	12407	1286	4	91	0	0	0	logfile
✔	8SFL	40444	2024-11-17	2023-04-11	3.3	4.44	3.39	3.8	0.005	1.00	0.0	0.06	21.89	0.01	2.236	5.08	0.69	3.4	96.6	0.0	-0.87	0.88	0.77	2.17	3.8	0.004	0.65	0.0	0.04	21.85	0.00	2.516	9.87	3.79	3.7	96.3	0.0	1.61	0.97	0.91	0.89	2.33	12971	1296	4	114	0	0	0	logfile
✔	8SFP	40447	2024-11-16	2023-04-11	3.8	5.18	3.86	4.2	0.005	1.19	0.0	0.06	20.76	0.01	2.256	7.46	0.54	2.8	97.2	0.0	-0.93	0.89	0.78	1.19	4.2	0.003	0.72	0.0	0.04	20.72	0.00	2.474	11.91	2.98	2.3	97.7	0.0	1.15	0.56	0.90	0.87	1.00	12062	1240	4	93	0	0	0	logfile
✔	8J0F	35901	2024-11-15	2023-04-10	3.3	4.15	3.22	3.8	0.009	1.06	0.0	0.05	18.09	0.01	2.242	17.62	2.13	1.8	98.2	0.0	0.30	0.81	0.82	1.63	3.8	0.004	0.74	0.0	0.04	17.65	0.00	2.021	8.59	1.49	1.5	98.5	0.0	1.63	1.26	0.81	0.85	1.59	8932	1144	12	0	8	0	0	logfile
✔	8SEL	40421	2024-11-14	2023-04-10	3.8	4.20	3.61	4.2	0.026	2.25	0.0	0.13	12.89	0.01	2.474	1.85	0.00	4.3	92.8	2.9	-1.59	0.59	0.73	3.09	4.2	0.005	1.02	0.0	0.06	18.59	0.00	2.495	25.02	7.50	16.2	83.8	0.0	-3.60	2.58	0.57	0.72	1.53	5500	730	20	0	0	0	0	logfile
✔	8SEH	40411	2024-11-14	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.005	0.75	0.0	0.05	17.15	0.00	2.585	7.39	4.38	6.8	93.2	0.0	-3.20	1.33	0.44	0.82	3.03	5570	730	10	0	0	0	0	logfile
✔	8SEV	40430	2024-11-20	2023-04-10	3.17	3.33	3.18	3.3	0.003	0.53	0.0	0.04	14.62	0.00	2.236	6.19	0.00	3.1	96.9	0.0	1.76	0.60	0.79	2.51	3.3	0.002	0.49	0.0	0.04	16.29	0.00	2.456	4.71	0.36	3.0	97.0	0.0	2.15	0.49	0.61	0.81	2.33	20632	2504	8	0	8	0	0	logfile
✔	8SEZ	40434	2024-11-20	2023-04-10	3.54	3.68	3.48	3.6	0.003	0.57	0.0	0.04	12.88	0.01	0.570	14.92	0.27	2.9	96.9	0.2	1.95	0.53	0.75	1.99	3.6	0.003	0.61	0.0	0.04	15.98	0.01	2.587	7.25	1.65	2.2	97.6	0.2	1.91	0.57	0.57	0.78	1.90	20580	2508	12	4	4	0	0	logfile
✔	8SEY	40433	2024-11-20	2023-04-10	2.99	3.15	3.05	3.1	0.002	0.46	0.0	0.04	13.63	0.00	2.224	4.52	0.00	2.5	97.5	0.0	1.73	0.64	0.84	2.70	3.1	0.003	0.55	0.0	0.04	16.61	0.00	2.385	3.93	2.01	2.3	97.7	0.0	2.28	0.37	0.64	0.87	2.39	20568	2504	8	0	8	0	0	logfile
✔	8SEU	40429	2024-11-20	2023-04-10	3.0	3.25	3.00	3.2	0.005	0.72	8.0	0.05	12.63	0.00	1.873	7.45	1.96	2.3	97.4	0.3	1.51	0.59	0.85	2.48	3.2	0.005	1.12	4.0	0.04	15.45	0.00	2.234	5.45	2.23	2.3	97.7	0.0	2.25	1.40	0.58	0.85	2.21	20576	2512	8	0	4	0	0	logfile
✔	8SEX	40432	2024-11-20	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.52	0.0	0.04	16.20	0.00	2.555	4.82	1.79	1.7	98.1	0.2	2.63	0.57	0.64	0.83	2.32	20568	2504	8	0	8	0	0	logfile
✔	8SF0	40435	2024-11-20	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.52	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	3.0	0.003	0.53	0.0	0.03	17.59	0.00	2.473	5.12	1.61	1.0	99.0	0.0	2.07	0.41	0.61	0.81	2.29	20664	2512	8	0	8	0	0	logfile

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