Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iZZ	35878	2024-11-13	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✔	8iZY	35877	2024-11-18	2023-04-09	2.5	2.54	2.78	2.6	0.006	0.65	0.0	0.03	18.00	0.00	1.956	7.21	0.71	3.2	96.8	0.0	2.64	0.48	0.78	2.29	2.6	0.003	0.52	0.0	0.03	18.00	0.00	2.423	4.41	1.78	2.9	97.1	0.0	2.77	1.49	0.51	0.80	2.16	16776	1004	8	0	8	0	8360	logfile
✔	8SEB	40409	2024-11-15	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	3.4	0.003	0.64	0.0	0.04	14.66	0.00	1.044	7.95	2.22	3.9	95.9	0.2	0.43	0.57	0.72	0.81	2.03	9609	1223	4	0	1	0	0	logfile
✔	8oPT	17087	2024-11-18	2023-04-08	3.65	2.57	3.54	3.6	0.002	0.48	0.0	0.04	19.51	0.00	1.982	7.07	0.14	2.4	97.6	0.0	1.92	0.69	0.60	0.79	3.6	0.003	0.58	0.0	0.04	19.70	0.00	2.168	9.20	1.63	3.6	96.4	0.0	0.50	0.39	0.71	0.62	0.79	14971	825	5	54	2	0	7197	logfile
✔	8oPS	17086	2024-11-15	2023-04-08	3.82	3.04	3.82	2.8	0.003	0.57	0.0	0.04	21.45	0.01	1.982	6.28	0.78	0.7	99.3	0.0	1.99	0.64	0.50	0.99	1.9	0.004	0.62	0.0	0.04	21.90	0.01	2.384	14.18	1.30	3.4	96.6	0.0	0.36	0.93	0.69	0.60	0.77	9241	445	4	69	1	0	4258	logfile
✔	8SEA	40408	2024-11-16	2023-04-08	3.4	3.67	3.45	3.7	0.005	0.57	0.0	0.04	11.77	0.00	1.270	8.65	3.00	4.0	96.0	0.0	0.54	0.71	0.76	1.96	3.6	0.005	0.66	0.0	0.04	14.52	0.00	2.522	9.68	3.54	5.3	94.7	0.0	0.23	0.41	0.76	0.85	1.69	10208	1299	5	0	1	0	0	logfile
✔	8iZR	35869	2024-11-16	2023-04-07	3.62	4.12	3.84	4.0	0.013	2.00	38.0	0.13	17.09	0.01	2.376	13.47	14.34	3.1	96.8	0.1	0.34	0.63	0.73	1.05	4.0	0.003	0.75	0.0	0.04	17.16	0.00	2.448	10.80	4.03	2.0	98.0	0.0	1.08	0.89	0.65	0.79	0.61	11116	1400	1	0	0	0	0	logfile
✔	8oPL	17072	2024-11-19	2023-04-07	2.41	2.59	2.48	2.6	0.004	0.57	0.0	0.04	18.29	0.00	2.317	4.21	0.71	0.5	99.5	0.0	0.52	0.51	0.86	3.43	2.6	0.002	0.48	0.0	0.04	18.56	0.00	2.613	2.69	1.66	0.9	99.1	0.0	1.22	0.24	0.50	0.85	3.47	50679	6048	54	135	0	0	0	logfile
✔	8iZP	35867	2024-11-15	2023-04-07	3.31	3.72	3.43	3.7	0.015	2.04	19.0	0.13	17.71	0.01	2.316	9.67	15.23	3.7	96.2	0.2	-1.61	0.67	0.82	1.87	3.7	0.003	0.64	0.0	0.04	16.81	0.00	2.463	6.52	4.30	2.1	97.9	0.0	0.78	2.25	0.60	0.80	1.65	9425	1210	1	0	0	0	0	logfile
✔	8iZM	35865	2024-11-17	2023-04-07	3.01	2.60	3.16	3.2	0.007	1.07	0.0	0.05	14.42	0.01	1.440	21.98	0.97	3.1	96.9	0.0	-0.71	0.74	0.73	1.71	2.1	0.003	0.73	0.0	0.04	16.78	0.00	2.397	11.56	2.44	1.9	98.1	0.0	1.09	1.01	0.78	0.81	2.18	12742	1608	6	0	2	0	0	logfile
✔	8iZF	35863	2024-11-15	2023-04-07	3.85	4.31	3.92	4.2	0.006	1.10	0.0	0.06	16.15	0.01	1.945	21.89	2.73	9.5	89.8	0.7	-1.59	0.63	0.78	0.99	4.2	0.003	0.81	0.0	0.04	17.30	0.01	2.313	11.83	4.22	8.7	91.3	0.0	-0.30	1.38	0.61	0.77	1.08	7594	894	6	0	2	0	0	logfile
✔	8oPQ	17085	2024-11-16	2023-04-07	3.28	2.33	3.33	2.2	0.003	0.52	0.0	0.04	9.91	0.01	2.245	8.25	0.00	3.8	96.2	0.0	1.64	0.77	0.77	3.11	2.2	0.004	0.63	0.0	0.04	15.05	0.00	2.533	7.22	3.36	3.8	96.2	0.0	2.00	0.53	0.77	0.79	2.88	10006	1296	4	0	2	0	0	logfile
✔	8SDY	40354	2024-11-14	2023-04-07	2.79	3.13	2.86	3.1	0.005	0.66	0.0	0.04	16.84	0.01	2.018	4.74	0.72	1.4	98.6	0.0	2.03	0.62	0.83	2.49	3.1	0.003	0.58	0.0	0.04	17.12	0.00	2.529	4.48	2.40	2.3	97.7	0.0	2.25	0.29	0.57	0.80	1.85	3894	494	2	0	1	12	0	logfile
✔	8oPC	17048	2024-11-19	2023-04-07	2.99	3.29	3.16	3.2	0.005	0.77	0.0	0.04	17.78	0.00	2.198	8.83	1.08	5.4	94.6	0.0	-0.67	0.49	0.87	3.04	3.2	0.004	0.59	0.0	0.04	18.11	0.00	2.401	6.21	2.17	3.9	96.1	0.0	0.23	1.42	0.47	0.86	2.78	53088	6328	56	140	0	0	0	logfile
✔	8SDZ	40355	2024-11-14	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.59	0.0	0.04	16.55	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.005	0.62	0.0	0.04	16.61	0.00	2.607	4.71	3.57	1.4	98.6	0.0	1.74	0.42	0.59	0.84	2.65	3913	500	2	0	1	22	0	logfile
✔	8SDU	40352	2024-11-14	2023-04-07	2.05	2.16	2.08	2.1	0.002	0.49	0.0	0.04	14.85	0.00	2.231	4.34	0.71	1.0	99.0	0.0	2.05	0.74	0.85	5.13	2.1	0.003	0.56	0.0	0.04	15.05	0.00	2.585	2.68	0.95	0.8	99.2	0.0	2.66	0.22	0.73	0.86	4.95	3942	500	2	0	0	70	0	logfile
✔	8ooY	17033	2024-11-14	2023-04-06	4.0	3.79	3.92	3.7	0.004	0.68	0.0	0.04	20.02	0.00	2.016	12.57	0.79	5.1	94.9	0.0	-0.97	0.81	0.77	—	3.7	0.003	0.64	0.0	0.04	21.22	0.00	2.099	9.72	1.77	4.5	95.5	0.0	0.10	0.45	0.81	0.77	—	5828	604	5	51	1	0	0	logfile
✔	8oP9	17045	2024-11-17	2023-04-06	3.36	3.32	3.35	3.6	0.003	0.55	0.0	0.04	8.96	0.00	2.012	3.97	0.34	0.3	99.7	0.0	2.02	0.61	0.78	2.96	3.6	0.003	0.58	0.0	0.04	13.65	0.00	2.452	3.16	2.76	1.8	98.2	0.0	1.08	1.77	0.64	0.84	3.90	13811	1660	15	0	36	10	0	logfile
✔	8oP1	17035	2024-11-18	2023-04-06	3.5	3.75	3.42	3.7	0.006	0.75	0.0	0.05	15.51	0.00	2.154	12.80	0.00	6.3	93.7	0.0	-0.39	0.65	0.79	1.94	3.7	0.003	0.59	0.0	0.04	17.12	0.00	2.357	8.44	2.03	3.3	96.7	0.0	1.04	0.44	0.64	0.77	1.27	15415	1890	10	35	0	0	0	logfile
✔	8SD0	40348	2024-11-14	2023-04-06	3.8	3.94	3.78	3.9	0.004	0.86	0.0	0.05	18.36	0.01	2.276	9.69	0.52	6.8	93.2	0.0	-1.62	0.73	0.79	1.64	3.9	0.003	0.68	0.0	0.04	18.72	0.00	1.470	11.63	3.65	7.0	93.0	0.0	-0.25	0.47	0.73	0.79	1.90	5829	636	3	31	2	0	0	logfile

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