Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GLU	40218	2024-11-16	2023-03-23	3.57	3.90	3.54	3.8	0.003	0.56	0.0	0.04	15.70	0.00	2.053	7.60	0.00	4.7	95.3	0.0	-0.89	0.70	0.75	1.26	3.8	0.005	0.67	0.0	0.04	17.00	0.00	1.891	7.89	1.90	6.2	93.8	0.0	-0.80	0.46	0.71	0.77	1.38	12338	1533	8	0	7	0	0	logfile
✔	8iU2	35714	2024-11-15	2023-03-23	3.35	3.66	3.45	3.7	0.012	1.19	0.0	0.07	10.94	0.01	2.299	6.27	1.64	6.6	93.3	0.1	-2.77	0.65	0.83	3.65	3.6	0.003	0.63	0.0	0.04	14.95	0.00	2.597	5.46	2.62	2.7	97.3	0.0	-0.17	0.69	0.66	0.85	2.61	8734	1137	6	0	1	0	0	logfile
✔	8oiF	16891	2024-11-14	2023-03-22	3.5	3.41	3.30	3.4	0.003	0.59	0.0	0.04	13.83	0.01	2.246	6.05	0.00	6.8	93.2	0.0	-0.42	0.75	0.81	3.19	3.3	0.002	0.58	0.0	0.04	14.24	0.00	1.174	5.11	1.82	5.4	94.6	0.0	0.04	0.85	0.75	0.81	2.57	6589	934	4	0	1	0	0	logfile
✔	8oiD	16889	2024-11-18	2023-03-22	2.3	2.37	2.20	2.3	0.004	0.61	0.0	0.04	13.01	0.00	1.840	4.07	0.96	3.8	96.2	0.0	-0.64	0.73	0.87	5.49	2.3	0.003	0.62	0.0	0.04	15.98	0.00	1.923	4.56	1.41	1.0	99.0	0.0	2.11	1.08	0.74	0.89	4.91	15206	1850	15	0	10	616	0	logfile
✔	8oi8	16888	2024-11-18	2023-03-22	2.28	2.38	2.21	2.3	0.004	0.58	0.0	0.04	12.07	0.00	1.798	3.42	0.65	1.4	98.6	0.0	-1.50	0.72	0.87	5.56	2.3	0.005	0.68	0.0	0.05	15.09	0.00	1.820	4.16	2.55	0.8	99.2	0.0	1.95	0.84	0.74	0.91	5.53	14895	1815	15	0	10	585	0	logfile
✔	8oi6	16887	2024-11-16	2023-03-22	3.59	3.91	3.62	3.8	0.005	0.64	0.0	0.04	16.97	0.00	1.808	7.71	0.24	1.8	98.1	0.1	0.35	0.77	0.84	1.96	3.8	0.003	0.62	0.0	0.04	16.54	0.00	1.983	8.06	1.63	1.9	98.0	0.1	0.73	0.37	0.77	0.84	1.76	11573	1464	14	0	11	0	0	logfile
✔	8iTF	35705	2024-11-15	2023-03-22	3.46	2.33	3.36	2.1	0.005	0.64	0.0	0.05	14.17	0.00	2.250	5.05	0.95	3.4	96.6	0.0	-0.32	0.77	0.78	2.35	2.2	0.004	0.62	0.0	0.04	15.96	0.00	2.523	4.24	2.73	4.7	95.3	0.0	0.27	0.93	0.78	0.81	2.53	9551	1279	7	0	1	0	0	logfile
✔	8iTM	35707	2024-11-15	2023-03-22	3.13	3.36	3.13	3.4	0.004	0.61	0.0	0.04	14.14	0.00	2.218	9.97	0.00	4.4	95.6	0.0	0.04	0.63	0.77	1.91	3.4	0.003	0.57	0.0	0.04	16.07	0.00	2.584	6.88	2.99	3.3	96.7	0.0	0.72	2.17	0.66	0.81	1.46	7905	1035	5	0	0	0	0	logfile
✔	8iTL	35706	2024-11-15	2023-03-22	3.23	3.44	3.22	3.5	0.004	0.61	0.0	0.04	14.37	0.00	1.351	9.42	0.00	4.1	95.9	0.0	-0.13	0.62	0.76	2.50	3.5	0.003	0.59	0.0	0.04	16.34	0.00	2.477	6.02	2.34	2.6	97.4	0.0	0.45	0.37	0.65	0.80	2.36	7954	1035	5	0	0	0	0	logfile
✔	8iT0	35702	2024-11-18	2023-03-21	3.5	5.12	3.52	3.7	0.005	0.96	0.0	0.06	18.67	0.01	2.213	10.41	0.12	6.5	93.5	0.0	-2.62	0.82	0.64	1.03	3.7	0.003	0.65	0.0	0.04	19.04	0.00	2.317	13.24	1.10	5.6	94.4	0.0	-0.98	0.61	0.94	0.85	0.86	16922	1830	8	90	0	0	0	logfile
✔	8iSY	35700	2024-11-14	2023-03-21	3.27	4.45	3.37	4.0	0.004	0.60	0.0	0.05	12.79	0.00	2.047	6.28	0.00	2.9	97.0	0.1	0.64	0.79	0.69	4.36	4.0	0.003	0.55	0.0	0.04	13.57	0.00	2.585	6.72	0.81	2.6	97.4	0.0	1.55	0.47	0.77	0.75	3.79	7877	957	2	0	0	0	0	logfile
✔	8iSS	35694	2024-11-15	2023-03-21	3.19	3.41	3.22	3.5	0.003	0.51	0.0	0.04	20.03	0.00	2.026	15.69	0.39	6.0	94.0	0.0	-1.16	0.64	0.77	2.33	3.5	0.003	0.56	0.0	0.04	20.24	0.00	2.053	8.32	2.75	4.9	95.1	0.0	0.15	0.41	0.64	0.76	1.73	8807	889	6	80	1	0	0	logfile
✔	8iSZ	35701	2024-11-15	2023-03-21	3.27	4.42	3.33	4.2	0.004	0.85	0.0	0.06	20.89	0.01	1.918	9.90	0.12	6.8	93.2	0.0	-2.32	0.78	0.62	0.36	4.2	0.004	0.84	0.0	0.05	20.80	0.01	2.150	17.13	2.80	6.1	93.9	0.0	-1.47	1.59	0.82	0.75	0.96	8461	915	4	45	0	0	0	logfile
✔	8oHS	16884	2024-11-17	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.004	0.70	0.0	0.04	13.60	0.00	2.181	6.08	0.07	1.9	98.1	0.0	1.11	2.07	0.51	0.87	—	13335	1758	9	0	0	0	0	logfile
✔	8iSi	35691	2024-11-17	2023-03-20	3.77	3.93	3.51	3.8	0.003	0.61	0.0	0.04	14.57	0.00	2.128	7.63	0.07	3.9	96.1	0.0	1.00	0.79	0.79	1.47	3.8	0.003	0.62	0.0	0.04	15.85	0.00	2.534	6.34	2.14	3.6	96.4	0.0	0.83	0.43	0.76	0.73	1.33	13095	1675	2	0	0	0	0	logfile
✔	8iSK	35693	2024-11-17	2023-03-20	3.3	3.77	3.43	3.7	0.004	0.69	0.0	0.04	16.32	0.02	2.116	10.64	0.14	4.1	95.9	0.0	0.41	0.73	0.78	1.81	3.7	0.003	0.66	0.0	0.04	16.74	0.00	2.428	6.77	2.22	3.7	96.3	0.1	0.69	0.40	0.73	0.81	1.46	13273	1693	4	0	2	0	0	logfile
✔	8iSJ	35692	2024-11-17	2023-03-20	3.0	3.36	3.18	3.4	0.004	0.72	0.0	0.05	16.09	0.01	2.173	9.88	0.20	5.0	95.0	0.1	0.13	0.67	0.78	1.89	3.3	0.003	0.66	0.0	0.04	16.68	0.00	2.490	6.94	2.29	4.8	95.0	0.1	0.30	1.75	0.66	0.81	2.02	13533	1716	4	0	2	0	0	logfile
✔	8oH2	16876	2024-11-14	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	8iRP	35682	2024-11-18	2023-03-19	2.8	2.82	2.91	3.0	0.004	0.61	0.0	0.04	13.36	0.00	1.950	7.68	0.00	4.1	95.9	0.0	1.19	0.62	0.86	3.83	3.0	0.004	0.56	0.0	0.04	14.40	0.00	2.371	4.87	0.70	4.3	95.7	0.0	1.18	0.90	0.60	0.87	3.71	16350	1080	8	0	6	2	8208	logfile
✔	8iRL	35678	2024-11-15	2023-03-19	2.7	2.78	2.75	2.9	0.007	0.68	0.0	0.05	12.79	0.01	2.014	3.36	0.00	2.4	97.6	0.0	0.48	0.67	0.88	3.54	2.9	0.003	0.55	0.0	0.04	14.58	0.00	2.622	2.14	0.82	2.7	97.3	0.0	2.09	0.34	0.66	0.89	2.42	8108	1080	4	0	4	0	0	logfile

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