Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iRP	35682	2024-11-18	2023-03-19	2.8	2.82	2.91	3.0	0.004	0.61	0.0	0.04	13.36	0.00	1.950	7.68	0.00	4.1	95.9	0.0	1.19	0.62	0.86	3.83	3.0	0.004	0.56	0.0	0.04	14.40	0.00	2.371	4.87	0.70	4.3	95.7	0.0	1.18	0.90	0.60	0.87	3.71	16350	1080	8	0	6	2	8208	logfile
✔	8iRN	35680	2024-11-18	2023-03-19	2.7	2.91	2.65	2.9	0.004	0.59	0.0	0.04	13.27	0.00	1.906	7.43	0.23	3.9	96.1	0.0	1.56	0.64	0.87	4.09	2.9	0.004	0.58	0.0	0.04	14.17	0.00	2.413	4.08	0.35	3.2	96.7	0.1	1.76	0.94	0.60	0.87	3.75	16352	1080	8	0	6	2	8208	logfile
✔	8iRM	35679	2024-11-15	2023-03-19	2.6	2.91	2.63	2.9	0.007	0.68	0.0	0.04	13.13	0.00	2.101	7.26	0.00	3.6	96.4	0.0	0.86	0.67	0.89	4.19	2.8	0.002	0.46	0.0	0.04	14.52	0.00	2.441	21.47	1.52	3.1	96.9	0.0	2.58	1.25	0.64	0.89	3.70	8138	1080	8	2	4	2	8	logfile
✔	8GKH	40184	2024-11-14	2023-03-19	2.7	2.25	2.72	2.0	0.002	1.27	0.0	0.10	22.53	0.00	1.881	5.49	0.00	1.2	98.8	0.0	3.05	0.74	0.70	2.48	2.0	0.004	0.65	0.0	0.04	22.70	0.00	1.867	8.23	2.21	1.3	98.7	0.0	0.99	0.54	0.76	0.74	2.11	7570	600	7	125	3	3	0	logfile
✔	8GKG	40183	2024-11-18	2023-03-18	4.38	3.94	4.39	4.9	0.002	0.54	0.0	0.04	12.43	0.00	2.293	5.72	0.00	16.3	83.5	0.2	-2.00	0.45	0.66	—	4.8	0.002	0.64	0.0	0.04	12.22	0.00	2.521	4.31	0.00	13.4	86.3	0.3	-1.43	0.44	0.44	0.65	—	17160	2700	5	0	0	0	0	logfile
✔	8oFZ	16864	2024-11-14	2023-03-17	3.2	2.79	3.07	3.1	0.010	1.74	0.0	0.07	14.61	0.01	2.314	4.34	5.52	3.3	96.7	0.0	-1.35	0.30	0.60	3.84	3.1	0.003	0.67	0.0	0.04	14.70	0.00	2.527	9.77	1.93	4.4	95.6	0.0	1.71	1.18	0.60	0.82	2.29	7368	976	8	0	8	0	0	logfile
✔	8GK7	40180	2024-11-18	2023-03-17	3.32	4.85	3.52	4.2	0.004	0.61	0.0	0.04	16.39	0.00	2.249	6.23	0.00	6.7	93.3	0.0	0.67	0.74	0.82	1.00	4.2	0.003	0.56	0.0	0.04	15.51	0.00	2.369	7.87	0.77	7.3	92.7	0.0	1.03	0.74	0.75	0.84	1.04	17621	1128	4	0	3	0	8791	logfile
✔	8iRJ	35676	2024-11-15	2023-03-17	3.49	2.75	—	3.2	0.007	1.10	0.0	0.06	14.43	0.01	2.027	7.25	1.15	7.0	93.0	0.0	-1.75	0.73	0.73	1.42	3.2	0.004	0.83	0.0	0.04	16.35	0.00	2.568	8.52	2.64	4.5	95.5	0.0	0.15	0.73	0.76	0.78	1.20	8228	1062	2	0	0	0	0	logfile
✔	8oFY	16863	2024-11-14	2023-03-17	3.7	3.51	3.49	3.6	0.009	1.51	0.0	0.07	15.13	0.01	2.159	4.79	2.21	3.7	95.9	0.4	-0.53	0.34	0.62	4.66	3.6	0.003	0.70	0.0	0.04	15.82	0.00	2.623	7.97	1.24	4.2	95.8	0.0	1.49	1.63	0.58	0.79	2.90	7420	976	8	0	4	0	0	logfile
✔	8iQG	35661	2024-11-17	2023-03-16	3.5	4.20	3.54	3.9	0.004	0.57	0.0	0.04	16.21	0.00	2.133	13.95	0.39	5.7	94.3	0.0	-1.06	0.81	0.71	2.17	3.9	0.004	0.75	1.0	0.05	16.20	0.00	2.360	13.46	3.09	4.4	95.6	0.0	-0.93	1.18	0.85	0.79	2.38	8517	1168	5	0	0	0	0	logfile
✔	8iQF	35660	2024-11-17	2023-03-16	4.6	4.96	4.72	4.5	0.003	0.63	0.0	0.00	4.93	0.00	1.995	4.78	0.00	4.2	95.8	0.0	-0.27	0.79	0.61	—	4.5	0.004	0.89	0.0	0.00	5.92	0.00	2.332	1.74	0.00	18.1	81.9	0.0	-2.88	3.20	0.82	0.65	—	9072	2268	10	0	0	0	0	logfile
✔	8GJN	40095	2024-11-14	2023-03-16	3.6	2.60	3.37	3.3	0.013	1.65	0.0	0.09	14.17	0.01	2.431	9.25	1.10	8.7	91.3	0.0	-2.73	0.60	0.68	2.64	2.1	0.003	0.69	0.0	0.04	14.79	0.00	2.598	8.63	2.47	3.6	96.4	0.0	-1.24	1.05	0.60	0.70	3.21	3319	421	4	0	1	0	0	logfile
✔	8iQ4	35657	2024-11-14	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	3.1	0.003	0.52	0.0	0.04	15.47	0.00	2.491	4.07	2.47	4.6	95.4	0.0	1.41	0.18	0.68	0.83	4.59	7080	954	6	0	1	0	0	logfile
✔	8iQ6	35658	2024-11-14	2023-03-15	3.4	3.65	3.40	3.7	0.004	0.59	0.0	0.05	15.45	0.00	2.254	5.62	0.29	4.1	95.9	0.0	1.39	0.75	0.86	2.60	3.7	0.003	0.50	0.0	0.04	15.64	0.00	2.511	4.01	2.63	3.4	96.5	0.1	1.41	1.13	0.74	0.85	2.24	7059	954	6	0	1	0	0	logfile
✔	8oFF	16859	2024-11-17	2023-03-15	3.4	3.63	3.35	3.7	0.007	0.63	0.0	0.04	27.07	0.01	2.106	5.35	6.72	8.7	91.3	0.0	-2.87	0.74	0.81	1.90	3.7	0.003	0.54	0.0	0.03	27.17	0.00	2.538	4.73	2.74	4.0	96.0	0.0	0.37	0.43	0.76	0.86	1.43	14424	1146	13	289	0	0	0	logfile
✔	8iP4	35631	2024-11-17	2023-03-14	2.7	3.34	2.82	3.1	0.002	0.44	0.0	0.04	12.81	0.00	2.319	4.04	0.00	1.6	98.4	0.0	3.99	0.73	0.82	2.85	3.1	0.002	0.51	0.0	0.04	15.41	0.00	2.556	6.77	0.98	1.5	98.5	0.0	3.58	0.52	0.72	0.82	3.11	12933	1600	12	0	3	5	0	logfile
✔	8iPT	35643	2024-11-19	2023-03-14	3.5	3.89	3.56	3.8	0.003	0.67	0.0	0.04	18.35	0.00	2.200	9.84	0.32	8.0	91.9	0.2	-0.06	0.73	0.80	1.33	3.8	0.003	0.65	0.0	0.04	18.43	0.00	2.213	6.21	3.02	8.7	91.2	0.1	0.32	0.64	0.73	0.82	1.59	18178	2322	8	0	4	0	0	logfile
✔	8iP5	35632	2024-11-17	2023-03-14	2.5	3.18	2.56	3.0	0.002	0.43	0.0	0.04	12.76	0.00	2.236	6.28	0.00	1.6	98.4	0.0	3.88	0.74	0.84	3.08	3.0	0.003	0.51	0.0	0.04	15.49	0.00	2.630	5.35	0.35	1.6	98.4	0.0	3.59	0.55	0.72	0.84	3.08	12928	1600	12	0	3	5	0	logfile
✔	8iPR	35641	2024-11-17	2023-03-14	3.0	3.90	2.97	3.4	0.004	0.71	0.0	0.04	16.94	0.00	1.978	11.32	0.13	5.9	94.0	0.1	1.55	0.72	0.81	1.76	3.4	0.003	0.69	0.0	0.04	16.34	0.00	2.045	6.65	1.94	4.8	95.2	0.0	2.22	1.01	0.72	0.88	1.30	14894	2038	8	0	8	0	0	logfile
✔	8iPQ	35640	2024-11-17	2023-03-14	3.5	3.94	3.69	3.8	0.004	0.77	2.0	0.05	16.07	0.01	2.209	16.79	0.61	7.2	92.7	0.1	0.55	0.64	0.80	0.45	3.8	0.003	0.76	0.0	0.04	16.54	0.01	2.452	9.64	3.28	7.4	92.5	0.1	0.51	0.75	0.64	0.81	0.28	14456	1996	4	0	0	0	0	logfile

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