Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iPR	35641	2024-11-17	2023-03-14	3.0	3.90	2.97	3.4	0.004	0.71	0.0	0.04	16.94	0.00	1.978	11.32	0.13	5.9	94.0	0.1	1.55	0.72	0.81	1.76	3.4	0.003	0.69	0.0	0.04	16.34	0.00	2.045	6.65	1.94	4.8	95.2	0.0	2.22	1.01	0.72	0.88	1.30	14894	2038	8	0	8	0	0	logfile
✔	8iPQ	35640	2024-11-17	2023-03-14	3.5	3.94	3.69	3.8	0.004	0.77	2.0	0.05	16.07	0.01	2.209	16.79	0.61	7.2	92.7	0.1	0.55	0.64	0.80	0.45	3.8	0.003	0.76	0.0	0.04	16.54	0.01	2.452	9.64	3.28	7.4	92.5	0.1	0.51	0.75	0.64	0.81	0.28	14456	1996	4	0	0	0	0	logfile
✔	8iP5	35632	2024-11-17	2023-03-14	2.5	3.18	2.56	3.0	0.002	0.43	0.0	0.04	12.76	0.00	2.236	6.28	0.00	1.6	98.4	0.0	3.88	0.74	0.84	3.08	3.0	0.003	0.51	0.0	0.04	15.49	0.00	2.630	5.35	0.35	1.6	98.4	0.0	3.59	0.55	0.72	0.84	3.08	12928	1600	12	0	3	5	0	logfile
✔	8Gi8	40062	2024-11-14	2023-03-13	2.88	3.11	2.77	3.1	0.010	1.16	0.0	0.09	26.08	0.00	1.935	11.74	0.00	2.1	97.9	0.0	1.50	0.58	0.78	3.81	3.1	0.004	0.64	0.0	0.04	19.14	0.00	2.491	13.56	1.62	3.1	96.9	0.0	1.78	0.42	0.62	0.81	2.73	6990	720	6	0	30	45	0	logfile
✔	8Gi9	40063	2024-11-14	2023-03-13	2.84	3.09	2.82	3.1	0.009	1.11	0.0	0.10	15.91	0.00	1.878	8.12	0.00	4.6	95.4	0.0	1.20	0.57	0.79	4.20	3.1	0.004	0.58	0.0	0.04	14.43	0.00	2.533	6.20	1.31	3.8	96.2	0.0	1.74	0.36	0.61	0.82	2.80	6852	720	6	0	39	45	0	logfile
✔	8oF4	16845	2024-11-17	2023-03-13	2.94	2.89	—	2.9	0.014	1.97	4.0	0.09	25.75	0.03	2.486	0.19	0.58	3.6	96.4	0.0	-0.35	0.81	0.77	3.16	3.0	0.004	0.68	0.0	0.04	26.68	0.00	2.447	9.50	2.10	4.0	96.0	0.0	1.61	1.14	0.83	0.81	1.88	14087	1029	12	290	1	0	0	logfile
✔	8ioW	35627	2024-11-14	2023-03-13	3.2	3.42	3.20	3.4	0.007	0.98	0.0	0.06	14.46	0.01	2.272	8.16	0.22	5.5	94.5	0.0	-2.31	0.69	0.79	3.01	3.4	0.003	0.66	0.0	0.04	15.97	0.00	2.428	11.69	2.39	3.6	96.4	0.0	-1.48	0.90	0.71	0.83	2.72	4178	537	5	0	2	0	0	logfile
✔	8Gi0	40056	2024-11-16	2023-03-13	3.5	3.02	3.04	3.0	0.004	0.70	0.0	0.05	14.69	0.01	2.170	3.36	1.14	3.6	96.4	0.0	-0.53	0.65	0.81	3.76	3.1	0.002	0.56	0.0	0.04	15.30	0.00	2.506	2.63	1.97	3.7	96.3	0.0	0.80	0.38	0.71	0.82	2.69	12189	1625	6	0	0	0	0	logfile
✔	8Gi1	40059	2024-11-15	2023-03-13	3.65	3.39	3.63	3.8	0.017	1.44	12.0	0.10	11.69	0.01	1.301	10.30	0.86	4.1	95.9	0.0	1.00	0.61	0.69	2.76	3.8	0.004	0.63	0.0	0.04	15.81	0.00	2.630	5.12	2.96	5.9	94.1	0.0	2.07	1.58	0.68	0.79	2.36	9704	1152	8	0	0	0	0	logfile
✔	8GHV	40052	2024-11-18	2023-03-12	2.8	3.09	2.84	3.1	0.005	0.74	0.0	0.05	13.62	0.01	2.190	3.46	0.76	3.3	96.7	0.0	0.26	0.59	0.79	3.50	3.1	0.003	0.58	0.0	0.04	14.50	0.00	2.371	2.01	1.52	4.2	95.8	0.0	0.93	0.98	0.67	0.85	4.08	15874	1125	6	0	1	0	7637	logfile
✔	8io7	35610	2024-11-17	2023-03-10	2.62	3.42	2.64	3.2	0.005	0.66	0.0	0.04	13.65	0.00	1.959	7.96	0.00	3.0	97.0	0.0	0.55	0.78	0.87	3.93	3.2	0.004	0.55	0.0	0.04	15.54	0.00	1.922	5.42	0.89	2.6	97.4	0.0	1.06	0.42	0.76	0.87	3.67	12876	1612	4	0	4	0	0	logfile
✔	8GHS	40049	2024-11-17	2023-03-10	4.0	3.96	3.96	4.0	0.004	0.70	0.0	0.04	13.67	0.01	1.896	14.61	1.06	3.8	96.1	0.1	1.68	0.51	0.81	—	4.0	0.004	0.74	0.0	0.04	16.57	0.01	2.496	7.62	3.10	3.1	96.9	0.1	1.66	0.80	0.54	0.86	—	13726	1724	12	0	0	0	0	logfile
✔	8io6	35609	2024-11-19	2023-03-10	2.68	3.44	2.73	3.1	0.007	0.76	0.0	0.05	14.10	0.01	1.898	8.32	0.00	3.2	96.8	0.0	-0.75	0.85	0.82	4.25	3.1	0.003	0.60	0.0	0.04	15.69	0.00	1.965	5.94	0.56	2.5	97.5	0.0	1.05	2.40	0.82	0.85	3.50	51504	6448	16	0	16	0	0	logfile
✔	8ioA	35613	2024-11-17	2023-03-10	2.63	3.39	2.69	3.2	0.005	0.52	0.0	0.04	10.79	0.00	1.866	9.18	0.53	3.5	96.5	0.0	0.69	0.69	0.89	4.43	3.1	0.004	0.79	1.0	0.06	12.92	0.00	2.037	7.24	0.90	2.7	97.3	0.0	1.44	0.89	0.66	0.87	3.46	12570	1576	4	0	4	0	0	logfile
✔	8io8	35611	2024-11-17	2023-03-10	2.17	2.85	2.44	2.5	0.006	0.67	0.0	0.05	11.49	0.00	2.008	5.86	0.08	3.4	96.6	0.0	0.23	0.70	0.91	5.90	2.5	0.002	0.52	0.0	0.04	13.80	0.00	1.877	3.07	0.53	2.9	97.0	0.1	1.39	0.40	0.70	0.91	4.57	12596	1576	4	0	6	0	0	logfile
✔	8ioD	35616	2024-11-15	2023-03-10	2.59	2.77	2.63	2.8	0.005	0.80	0.0	0.05	14.07	0.01	2.038	13.91	0.00	5.0	95.0	0.0	-0.83	0.53	0.66	2.35	2.8	0.003	0.59	0.0	0.04	16.48	0.00	2.274	9.11	2.52	3.9	96.1	0.0	0.34	0.40	0.53	0.68	1.74	8061	1023	8	0	3	0	0	logfile
✔	8ioC	35615	2024-11-15	2023-03-10	2.86	3.83	2.92	3.6	0.007	0.73	0.0	0.05	14.04	0.00	2.197	9.59	0.11	5.7	94.3	0.0	-0.98	0.68	0.77	2.67	3.6	0.004	0.88	0.0	0.04	16.51	0.00	2.384	12.16	2.44	4.1	95.9	0.0	0.22	1.35	0.63	0.78	1.88	8223	1041	7	0	1	0	0	logfile
✔	8GHK	40046	2024-11-16	2023-03-10	3.47	3.73	3.53	3.7	0.004	0.62	0.0	0.05	17.27	0.00	2.080	7.88	0.45	6.6	93.4	0.0	-2.08	0.72	0.84	2.62	3.7	0.004	0.63	0.0	0.05	16.07	0.00	2.458	5.13	4.11	5.2	94.8	0.0	-1.50	0.73	0.74	0.85	2.50	11671	1556	13	0	17	0	0	logfile
✔	8iNR	35601	2024-11-14	2023-03-10	2.73	2.91	2.73	3.0	0.012	0.88	1.0	0.06	13.81	0.00	2.153	12.22	0.00	5.5	94.5	0.0	-1.22	0.50	0.66	2.98	3.0	0.004	0.61	0.0	0.04	16.44	0.00	2.259	7.71	3.17	2.8	97.2	0.0	0.49	0.61	0.58	0.76	2.53	7219	912	6	0	1	0	0	logfile
✔	8oEF	16825	2024-11-16	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile

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