Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ioC	35615	2024-11-15	2023-03-10	2.86	3.83	2.92	3.6	0.007	0.73	0.0	0.05	14.04	0.00	2.197	9.59	0.11	5.7	94.3	0.0	-0.98	0.68	0.77	2.67	3.6	0.004	0.88	0.0	0.04	16.51	0.00	2.384	12.16	2.44	4.1	95.9	0.0	0.22	1.35	0.63	0.78	1.88	8223	1041	7	0	1	0	0	logfile
✔	8oE4	16824	2024-11-16	2023-03-10	3.6	3.08	3.52	3.5	0.005	0.85	0.0	0.05	14.53	0.01	2.196	4.88	0.73	2.9	97.1	0.0	-0.38	0.85	0.77	2.05	3.5	0.003	0.69	0.0	0.04	15.01	0.00	2.531	9.49	2.84	3.8	96.2	0.0	-0.10	0.77	0.85	0.78	1.55	9951	1249	7	0	8	0	0	logfile
✔	8GHK	40046	2024-11-16	2023-03-10	3.47	3.73	3.53	3.7	0.004	0.62	0.0	0.05	17.27	0.00	2.080	7.88	0.45	6.6	93.4	0.0	-2.08	0.72	0.84	2.62	3.7	0.004	0.63	0.0	0.05	16.07	0.00	2.458	5.13	4.11	5.2	94.8	0.0	-1.50	0.73	0.74	0.85	2.50	11671	1556	13	0	17	0	0	logfile
✔	8io6	35609	2024-11-19	2023-03-10	2.68	3.44	2.73	3.1	0.007	0.76	0.0	0.05	14.10	0.01	1.898	8.32	0.00	3.2	96.8	0.0	-0.75	0.85	0.82	4.25	3.1	0.003	0.60	0.0	0.04	15.69	0.00	1.965	5.94	0.56	2.5	97.5	0.0	1.05	2.40	0.82	0.85	3.50	51504	6448	16	0	16	0	0	logfile
✔	8GHS	40049	2024-11-17	2023-03-10	4.0	3.96	3.96	4.0	0.004	0.70	0.0	0.04	13.67	0.01	1.896	14.61	1.06	3.8	96.1	0.1	1.68	0.51	0.81	—	4.0	0.004	0.74	0.0	0.04	16.57	0.01	2.496	7.62	3.10	3.1	96.9	0.1	1.66	0.80	0.54	0.86	—	13726	1724	12	0	0	0	0	logfile
✔	8iNR	35601	2024-11-14	2023-03-10	2.73	2.91	2.73	3.0	0.012	0.88	1.0	0.06	13.81	0.00	2.153	12.22	0.00	5.5	94.5	0.0	-1.22	0.50	0.66	2.98	3.0	0.004	0.61	0.0	0.04	16.44	0.00	2.259	7.71	3.17	2.8	97.2	0.0	0.49	0.61	0.58	0.76	2.53	7219	912	6	0	1	0	0	logfile
✔	8oEF	16825	2024-11-16	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile
✔	8io3	35606	2024-11-17	2023-03-10	3.02	3.99	3.07	3.4	0.015	1.00	0.0	0.05	9.71	0.01	2.369	3.20	0.58	3.6	96.4	0.0	-2.78	0.62	0.85	3.11	3.4	0.004	0.58	0.0	0.04	12.67	0.00	2.574	5.27	0.66	3.8	96.2	0.0	2.79	0.74	0.61	0.86	2.64	13620	1728	8	0	4	0	0	logfile
✔	8iNB	35595	2024-11-14	2023-03-09	3.1	3.32	3.16	3.3	0.003	0.59	0.0	0.04	22.43	0.01	2.235	7.03	0.24	6.9	93.1	0.0	0.01	0.73	0.81	2.62	3.3	0.003	0.54	0.0	0.04	22.25	0.01	2.440	4.06	2.36	7.1	92.9	0.0	0.89	1.01	0.72	0.84	3.10	5321	498	4	65	0	0	0	logfile
✔	8GHC	40040	2024-11-16	2023-03-09	2.3	2.71	—	2.6	0.009	0.91	0.0	0.06	12.96	0.01	2.067	5.41	0.09	2.1	97.9	0.0	-1.43	0.75	0.86	4.85	2.6	0.005	0.65	0.0	0.04	15.60	0.00	2.575	7.70	1.06	1.6	98.4	0.0	0.76	0.40	0.77	0.88	4.84	10512	1310	4	0	2	0	0	logfile
✔	8oDT	16816	2024-11-19	2023-03-09	4.2	4.35	4.11	4.2	0.006	0.71	0.0	0.04	12.87	0.00	1.882	17.39	3.61	2.8	97.1	0.1	1.77	0.57	0.66	—	4.2	0.005	0.68	0.0	0.04	12.59	0.01	2.149	15.64	0.00	3.4	96.6	0.0	1.27	4.44	0.59	0.68	—	18800	1188	7	0	0	0	9496	logfile
✔	8GH3	40032	2024-11-17	2023-03-09	3.53	4.08	3.59	3.8	0.003	0.69	0.0	0.04	14.15	0.00	2.208	10.62	0.97	7.0	92.3	0.7	-1.06	0.79	0.80	1.56	3.8	0.003	0.67	0.0	0.04	15.42	0.00	2.511	7.59	1.03	6.7	93.1	0.2	-0.22	0.44	0.79	0.80	1.20	13515	1798	6	0	0	0	0	logfile
✔	8oDV	16819	2024-11-15	2023-03-09	4.7	4.86	4.41	4.7	0.007	1.10	0.0	0.05	14.06	0.01	2.192	25.76	0.00	4.6	95.4	0.0	-4.04	0.71	0.79	—	4.7	0.003	0.76	0.0	0.04	14.07	0.00	2.383	9.98	0.00	3.0	97.0	0.0	0.22	1.48	0.71	0.79	—	8233	1022	5	0	1	0	0	logfile
✔	8GHB	40039	2024-11-14	2023-03-09	2.76	3.35	2.85	3.2	0.006	0.82	0.0	0.05	13.62	0.01	2.072	4.28	0.00	2.8	97.2	0.0	-1.16	0.77	0.86	3.31	3.2	0.004	0.65	0.0	0.04	16.45	0.00	2.494	8.18	3.34	1.7	98.3	0.0	1.05	0.97	0.79	0.88	2.81	5289	658	2	0	1	0	0	logfile
✔	8GH8	40036	2024-11-14	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.60	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.0	0.003	0.72	0.0	0.04	26.13	0.01	2.527	8.74	0.00	11.6	88.2	0.2	-3.80	1.06	0.51	0.48	—	6991	559	8	136	0	0	0	logfile
✔	8GH2	40031	2024-11-17	2023-03-09	3.66	4.09	3.72	3.9	0.004	0.78	0.0	0.04	14.74	0.01	2.227	10.96	2.14	12.1	86.9	0.9	-1.47	0.77	0.80	1.00	3.9	0.003	0.75	0.0	0.05	16.33	0.01	2.388	9.12	2.21	10.5	89.0	0.5	-0.65	0.53	0.78	0.82	0.89	13941	1846	6	0	0	0	0	logfile
✔	8GH6	40033	2024-11-16	2023-03-09	3.08	3.04	3.06	3.1	0.006	1.10	0.0	0.06	23.18	0.01	2.128	1.10	0.13	2.0	97.9	0.1	-1.06	0.64	0.81	3.69	3.0	0.004	0.64	0.0	0.04	24.00	0.01	1.905	5.05	2.12	2.9	97.0	0.1	1.05	1.01	0.67	0.85	3.18	10785	898	6	177	4	0	0	logfile
✔	8GG0	29990	2024-11-14	2023-03-08	2.9	3.26	3.07	3.2	0.003	0.51	0.0	0.04	13.40	0.00	2.215	2.06	0.00	1.7	98.3	0.0	0.54	0.55	0.82	4.19	3.2	0.002	0.46	0.0	0.04	15.23	0.00	2.503	2.06	1.06	1.2	98.8	0.0	1.77	0.30	0.62	0.86	3.38	6745	897	6	0	2	5	0	logfile
✔	8GG7	29997	2024-11-14	2023-03-08	3.3	3.58	3.34	3.6	0.003	0.50	0.0	0.04	13.74	0.00	2.288	4.04	0.16	1.7	98.3	0.0	0.88	0.69	0.86	3.05	3.5	0.003	0.52	0.0	0.04	15.02	0.00	2.503	3.18	1.90	2.3	97.7	0.0	1.12	0.91	0.69	0.87	3.31	6687	903	6	0	2	1	0	logfile
✔	8GGP	40016	2024-11-13	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.003	0.48	0.0	0.04	13.69	0.00	2.638	1.24	1.03	1.4	98.6	0.0	2.60	0.25	0.51	0.84	3.43	2075	280	2	0	1	0	0	logfile

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