Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGY	40025	2024-11-13	2023-03-08	3.9	4.01	3.93	4.0	0.004	0.63	0.0	0.04	14.74	0.00	2.358	3.48	0.00	1.8	98.2	0.0	2.19	0.50	0.80	2.56	4.1	0.003	0.60	0.0	0.04	16.30	0.00	2.570	3.23	4.15	2.5	97.5	0.0	2.27	0.37	0.52	0.82	1.44	2096	281	2	0	1	0	0	logfile
✔	8GGV	40022	2024-11-13	2023-03-08	3.5	3.67	3.59	3.8	0.004	0.59	0.0	0.04	13.63	0.00	2.276	4.79	0.00	1.8	98.2	0.0	2.06	0.49	0.81	1.78	3.8	0.003	0.57	0.0	0.04	16.42	0.00	2.583	3.53	4.86	2.2	97.8	0.0	2.67	0.33	0.50	0.81	1.14	2064	281	2	0	1	0	0	logfile
✔	8GGW	40023	2024-11-13	2023-03-08	3.6	3.67	3.57	3.8	0.004	0.62	0.0	0.04	12.73	0.00	2.241	5.30	0.00	1.8	98.2	0.0	2.12	0.48	0.79	1.29	3.8	0.003	0.55	0.0	0.04	15.08	0.00	2.558	3.03	3.19	1.8	98.2	0.0	2.52	0.32	0.50	0.80	2.03	2079	281	2	0	1	0	0	logfile
✔	8GGQ	40017	2024-11-13	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.003	0.47	0.0	0.04	13.61	0.00	2.571	2.16	2.40	0.4	99.6	0.0	2.87	0.22	0.53	0.85	2.69	2130	281	2	0	1	0	0	logfile
✔	8GGH	40008	2024-11-16	2023-03-08	3.29	3.76	3.36	3.6	0.003	0.64	0.0	0.05	13.95	0.01	2.075	7.18	0.24	9.8	89.5	0.6	-1.03	0.76	0.85	1.85	3.7	0.003	0.68	0.0	0.04	15.53	0.01	2.427	5.63	2.12	8.2	91.2	0.5	-0.34	0.40	0.75	0.85	1.64	11798	1577	5	0	0	0	0	logfile
✔	8CRB	16807	2024-11-15	2023-03-08	4.6	4.12	4.59	4.0	0.013	1.98	2.0	0.10	14.75	0.02	2.540	0.58	1.23	10.1	88.0	1.9	-2.65	0.72	0.61	—	4.0	0.005	0.79	0.0	0.04	13.58	0.01	2.222	16.04	0.00	14.6	84.9	0.5	-2.84	1.48	0.73	0.63	—	8665	582	3	0	0	0	4286	logfile
✔	8GGo	40015	2024-11-13	2023-03-08	3.2	3.33	3.17	3.4	0.005	0.74	0.0	0.05	11.58	0.00	2.307	3.67	0.00	1.5	98.5	0.0	2.30	0.50	0.84	3.84	3.4	0.003	0.48	0.0	0.04	12.81	0.00	2.597	1.71	1.48	1.5	98.5	0.0	2.64	0.89	0.49	0.84	3.13	2095	279	2	0	1	0	0	logfile
✔	8GFV	29985	2024-11-14	2023-03-08	3.1	3.40	3.19	3.4	0.004	0.58	0.0	0.04	14.48	0.00	2.278	2.46	0.00	1.7	98.3	0.0	1.20	0.67	0.89	4.81	3.4	0.003	0.50	0.0	0.04	15.08	0.00	2.476	1.85	1.39	2.1	97.9	0.0	1.62	0.26	0.67	0.89	3.87	6702	892	8	0	2	3	0	logfile
✔	8iN8	35592	2024-11-14	2023-03-08	3.0	3.19	3.04	3.2	0.003	0.62	0.0	0.04	21.50	0.01	1.950	10.16	3.63	6.1	93.7	0.1	-0.30	0.71	0.75	1.75	3.2	0.004	0.67	0.0	0.04	21.57	0.01	1.888	8.91	1.82	6.5	93.5	0.0	-0.26	0.96	0.72	0.76	2.12	6663	724	5	47	1	0	0	logfile
✔	8GGN	40014	2024-11-13	2023-03-08	3.3	3.42	3.22	3.4	0.005	0.58	0.0	0.04	13.18	0.00	2.248	2.82	0.00	0.7	99.3	0.0	2.26	0.55	0.86	3.24	3.4	0.003	0.50	0.0	0.04	14.65	0.00	2.599	1.41	2.80	1.4	98.6	0.0	3.08	0.26	0.55	0.86	2.59	2168	285	2	0	1	0	0	logfile
✔	8GGD	40003	2024-11-16	2023-03-08	3.33	3.78	3.45	3.6	0.004	0.74	0.0	0.05	14.51	0.01	2.228	9.40	2.76	11.0	87.7	1.4	-1.43	0.76	0.83	1.59	3.7	0.003	0.70	0.0	0.04	15.33	0.01	2.500	4.49	1.58	8.8	90.6	0.6	-0.42	0.96	0.77	0.86	1.39	11724	1567	5	0	0	0	0	logfile
✔	8GGU	40021	2024-11-13	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.002	0.45	0.0	0.04	15.32	0.00	2.655	1.53	3.87	0.0	100.0	0.0	2.61	0.30	0.46	0.76	1.00	2053	281	2	0	1	0	0	logfile
✔	8GGE	40004	2024-11-14	2023-03-08	3.5	3.98	3.76	3.9	0.003	0.59	0.0	0.04	12.44	0.00	2.232	6.77	0.00	3.6	96.4	0.0	-0.02	0.66	0.81	2.59	3.9	0.002	0.53	0.0	0.04	14.37	0.00	2.464	2.94	1.96	3.2	96.8	0.0	0.60	0.36	0.66	0.81	1.89	6708	984	6	0	2	0	0	logfile
✔	8GG7	29997	2024-11-14	2023-03-08	3.3	3.58	3.34	3.6	0.003	0.50	0.0	0.04	13.74	0.00	2.288	4.04	0.16	1.7	98.3	0.0	0.88	0.69	0.86	3.05	3.5	0.003	0.52	0.0	0.04	15.02	0.00	2.503	3.18	1.90	2.3	97.7	0.0	1.12	0.91	0.69	0.87	3.31	6687	903	6	0	2	1	0	logfile
✔	8GGF	40005	2024-11-14	2023-03-08	3.6	4.03	3.80	4.0	0.005	0.79	0.0	0.05	13.58	0.00	2.147	7.95	0.00	4.4	95.6	0.0	-0.06	0.67	0.82	2.11	4.0	0.002	0.53	0.0	0.04	15.03	0.00	2.494	3.36	1.88	2.3	97.7	0.0	0.57	0.95	0.67	0.81	2.12	6607	956	6	0	2	0	0	logfile
✔	8GGL	40012	2024-11-13	2023-03-08	3.2	3.43	3.25	3.4	0.005	0.62	0.0	0.04	12.38	0.00	2.312	3.08	0.00	1.1	98.9	0.0	1.05	0.54	0.86	2.40	3.4	0.003	0.47	0.0	0.04	14.56	0.00	2.629	1.89	2.82	1.1	98.9	0.0	2.29	0.22	0.51	0.85	1.79	2151	284	2	0	1	1	0	logfile
✔	8GFY	29988	2024-11-14	2023-03-08	3.0	3.27	3.07	3.2	0.003	0.46	0.0	0.04	12.90	0.00	2.222	2.02	0.00	1.7	98.3	0.0	0.86	0.68	0.89	3.61	3.2	0.003	0.52	0.0	0.04	15.52	0.00	2.510	2.25	1.40	2.1	97.9	0.0	1.15	0.27	0.64	0.88	3.43	6670	891	6	0	2	4	0	logfile
✔	8GG6	29996	2024-11-14	2023-03-08	3.3	3.48	3.26	3.5	0.004	0.55	0.0	0.04	15.25	0.00	2.213	3.55	0.31	1.3	98.7	0.0	0.67	0.70	0.88	3.24	3.5	0.004	0.59	0.0	0.04	15.75	0.00	2.488	2.62	3.27	3.4	96.6	0.0	0.78	0.23	0.69	0.88	3.21	6725	904	6	0	2	4	0	logfile
✔	8GG3	29993	2024-11-14	2023-03-08	3.1	3.37	3.14	3.3	0.003	0.53	0.0	0.04	13.40	0.00	2.221	3.58	0.00	1.7	98.3	0.0	0.53	0.67	0.87	3.73	3.3	0.003	0.51	0.0	0.04	15.21	0.00	2.391	2.21	1.95	1.8	98.2	0.0	1.24	1.26	0.66	0.87	3.12	6753	894	6	0	2	6	0	logfile
✔	8GGP	40016	2024-11-13	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.003	0.48	0.0	0.04	13.69	0.00	2.638	1.24	1.03	1.4	98.6	0.0	2.60	0.25	0.51	0.84	3.43	2075	280	2	0	1	0	0	logfile

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