Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGQ	40017	2024-11-13	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.003	0.47	0.0	0.04	13.61	0.00	2.571	2.16	2.40	0.4	99.6	0.0	2.87	0.22	0.53	0.85	2.69	2130	281	2	0	1	0	0	logfile
✔	8GGW	40023	2024-11-13	2023-03-08	3.6	3.67	3.57	3.8	0.004	0.62	0.0	0.04	12.73	0.00	2.241	5.30	0.00	1.8	98.2	0.0	2.12	0.48	0.79	1.29	3.8	0.003	0.55	0.0	0.04	15.08	0.00	2.558	3.03	3.19	1.8	98.2	0.0	2.52	0.32	0.50	0.80	2.03	2079	281	2	0	1	0	0	logfile
✔	8GGV	40022	2024-11-13	2023-03-08	3.5	3.67	3.59	3.8	0.004	0.59	0.0	0.04	13.63	0.00	2.276	4.79	0.00	1.8	98.2	0.0	2.06	0.49	0.81	1.78	3.8	0.003	0.57	0.0	0.04	16.42	0.00	2.583	3.53	4.86	2.2	97.8	0.0	2.67	0.33	0.50	0.81	1.14	2064	281	2	0	1	0	0	logfile
✔	8GGY	40025	2024-11-13	2023-03-08	3.9	4.01	3.93	4.0	0.004	0.63	0.0	0.04	14.74	0.00	2.358	3.48	0.00	1.8	98.2	0.0	2.19	0.50	0.80	2.56	4.1	0.003	0.60	0.0	0.04	16.30	0.00	2.570	3.23	4.15	2.5	97.5	0.0	2.27	0.37	0.52	0.82	1.44	2096	281	2	0	1	0	0	logfile
✔	8GGR	40018	2024-11-13	2023-03-08	3.4	3.49	3.38	3.6	0.004	0.54	0.0	0.04	13.10	0.00	2.387	2.60	0.00	1.8	98.2	0.0	1.94	0.51	0.84	2.68	3.6	0.003	0.51	0.0	0.04	14.62	0.00	2.544	1.89	1.85	1.1	98.9	0.0	2.48	0.24	0.51	0.84	2.68	2143	281	2	0	1	1	0	logfile
✔	8CR9	16805	2024-11-15	2023-03-08	4.2	3.61	4.06	4.0	0.013	1.97	3.0	0.10	14.42	0.02	2.568	0.46	2.87	9.6	89.0	1.4	-2.67	0.57	0.61	—	4.0	0.003	0.71	0.0	0.04	13.84	0.01	2.262	7.08	0.00	13.3	86.4	0.4	-2.90	1.03	0.56	0.58	—	8621	571	3	0	0	0	4272	logfile
✔	8GGZ	40026	2024-11-13	2023-03-08	3.9	4.07	4.00	4.1	0.004	0.58	0.0	0.04	12.74	0.00	2.278	5.13	0.00	1.4	98.6	0.0	2.26	0.51	0.78	2.26	4.1	0.003	0.58	0.0	0.04	15.33	0.00	2.615	3.78	5.10	2.9	97.1	0.0	2.26	0.37	0.53	0.81	1.95	1994	281	2	0	1	0	0	logfile
✔	8GG2	29992	2024-11-14	2023-03-08	3.0	3.31	3.09	3.3	0.003	0.48	0.0	0.04	13.48	0.00	2.216	3.25	0.00	1.6	98.4	0.0	0.64	0.65	0.87	3.47	3.3	0.003	0.51	0.0	0.04	15.55	0.00	2.511	2.19	1.49	1.7	98.3	0.0	1.51	1.26	0.60	0.85	3.23	6800	896	6	0	2	6	0	logfile
✔	8GGK	40011	2024-11-13	2023-03-08	3.3	3.43	3.21	3.4	0.004	0.55	0.0	0.04	12.87	0.00	2.259	2.28	0.00	1.4	98.6	0.0	1.77	0.58	0.88	3.16	3.4	0.002	0.47	0.0	0.04	14.04	0.00	2.623	2.05	0.89	0.4	99.6	0.0	2.68	0.25	0.56	0.87	2.83	2218	288	2	0	1	2	0	logfile
✔	8GGM	40013	2024-11-13	2023-03-08	3.2	3.34	3.12	3.3	0.004	0.54	0.0	0.04	13.21	0.00	2.297	2.30	0.00	1.4	98.6	0.0	2.21	0.53	0.88	3.55	3.3	0.003	0.49	0.0	0.04	14.72	0.00	2.644	1.84	1.79	0.7	99.3	0.0	2.73	0.26	0.52	0.88	2.56	2211	287	2	0	1	0	0	logfile
✔	8GGJ	40010	2024-11-13	2023-03-08	3.5	3.54	3.35	3.5	0.004	0.53	0.0	0.04	13.04	0.00	2.245	2.07	0.00	0.4	99.6	0.0	1.95	0.54	0.87	3.64	3.5	0.003	0.49	0.0	0.04	14.40	0.00	2.535	1.38	1.36	0.7	99.3	0.0	2.62	1.24	0.58	0.87	2.46	2201	286	2	0	1	1	0	logfile
✔	8GFX	29987	2024-11-14	2023-03-08	3.0	3.31	3.10	3.3	0.004	0.53	0.0	0.04	13.47	0.00	2.248	3.22	0.00	2.2	97.8	0.0	0.67	0.64	0.88	4.45	3.3	0.002	0.51	0.0	0.04	15.65	0.00	2.510	1.92	3.06	1.9	98.1	0.0	1.35	0.33	0.65	0.89	3.94	6725	896	6	0	2	1	0	logfile
✔	8GG8	29998	2024-11-14	2023-03-08	3.3	3.62	3.40	3.6	0.003	0.50	0.0	0.04	13.45	0.00	2.264	4.44	0.16	1.9	98.1	0.0	0.54	0.68	0.85	2.87	3.6	0.002	0.51	0.0	0.04	15.03	0.00	2.397	2.38	1.81	1.9	98.1	0.0	1.14	0.92	0.67	0.86	2.86	6611	906	6	0	2	0	0	logfile
✔	8GGB	40001	2024-11-14	2023-03-08	3.5	3.74	3.49	3.7	0.005	0.80	0.0	0.05	14.63	0.00	2.306	3.97	0.18	2.9	97.1	0.0	0.27	0.67	0.82	2.73	3.7	0.002	0.49	0.0	0.04	14.96	0.00	2.457	2.86	2.14	1.7	98.3	0.0	0.93	0.36	0.67	0.82	2.31	6775	966	6	0	2	0	0	logfile
✔	8GGC	40002	2024-11-14	2023-03-08	3.4	3.86	3.56	3.8	0.004	0.73	0.0	0.05	14.24	0.00	2.250	6.39	0.19	2.4	97.6	0.0	-0.01	0.66	0.84	2.11	3.8	0.002	0.53	0.0	0.04	15.20	0.00	2.478	2.90	3.37	2.9	97.1	0.0	0.90	0.96	0.65	0.83	1.97	6515	932	6	0	2	0	0	logfile
✔	8GGT	40020	2024-11-13	2023-03-08	3.5	3.61	3.44	3.7	0.004	0.70	0.0	0.04	13.41	0.00	2.240	4.15	0.00	2.5	97.5	0.0	1.88	0.49	0.81	2.09	3.7	0.003	0.55	0.0	0.04	14.54	0.00	2.595	1.71	3.00	2.2	97.8	0.0	2.47	0.89	0.49	0.81	1.81	2105	281	2	0	1	0	0	logfile
✔	8GH1	40028	2024-11-13	2023-03-08	4.1	4.27	4.19	4.3	0.004	0.57	0.0	0.04	12.64	0.00	2.249	3.87	0.00	3.2	96.8	0.0	1.62	0.52	0.78	—	4.3	0.002	0.57	0.0	0.04	11.98	0.00	2.630	2.21	0.00	2.2	97.8	0.0	1.92	0.95	0.51	0.79	—	1976	281	2	0	1	0	0	logfile
✔	8GGS	40019	2024-11-13	2023-03-08	3.5	3.60	3.45	3.7	0.004	0.56	0.0	0.04	12.38	0.00	2.292	2.18	0.00	0.4	99.6	0.0	2.32	0.52	0.82	2.36	3.6	0.003	0.49	0.0	0.04	14.76	0.00	2.557	2.42	3.40	1.4	98.6	0.0	2.71	0.34	0.53	0.84	1.16	2114	281	2	0	1	0	0	logfile
✔	8GH0	40027	2024-11-13	2023-03-08	4.0	4.14	4.05	4.2	0.004	0.65	0.0	0.04	13.37	0.00	2.374	4.72	0.00	0.7	99.3	0.0	0.89	0.51	0.79	—	4.2	0.003	0.59	0.0	0.04	15.92	0.00	2.494	4.16	7.89	1.8	98.2	0.0	1.91	0.99	0.52	0.80	—	1954	281	2	0	1	0	0	logfile
✔	8iN8	35592	2024-11-14	2023-03-08	3.0	3.19	3.04	3.2	0.003	0.62	0.0	0.04	21.50	0.01	1.950	10.16	3.63	6.1	93.7	0.1	-0.30	0.71	0.75	1.75	3.2	0.004	0.67	0.0	0.04	21.57	0.01	1.888	8.91	1.82	6.5	93.5	0.0	-0.26	0.96	0.72	0.76	2.12	6663	724	5	47	1	0	0	logfile

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