Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GEL	29974	2024-11-18	2023-03-07	3.9	3.27	3.79	4.0	0.007	0.87	0.0	0.04	14.52	0.00	2.095	21.07	0.00	1.6	98.4	0.0	1.36	0.71	0.79	0.64	4.0	0.003	0.59	0.0	0.03	17.63	0.00	2.625	10.99	2.86	1.2	98.8	0.0	5.62	0.55	0.69	0.77	0.54	15556	1992	4	0	0	0	0	logfile
✔	8CQR	16799	2024-11-15	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.003	0.57	0.0	0.04	15.38	0.00	2.258	12.36	2.91	3.8	96.2	0.0	1.13	1.50	0.45	0.67	0.29	9708	618	6	0	0	0	5010	logfile
✔	8GF7	29980	2024-11-14	2023-03-07	4.8	3.61	4.18	4.4	0.003	0.68	0.0	0.06	10.15	0.00	1.681	53.15	0.00	10.2	89.8	0.0	-4.11	0.33	0.53	—	4.4	0.004	1.08	0.0	0.06	15.32	0.00	2.482	16.00	0.00	14.8	85.2	0.0	-3.95	2.18	0.33	0.54	—	3774	540	12	0	6	0	0	logfile
✔	8CR1	16801	2024-11-15	2023-03-07	3.2	3.42	3.21	3.4	0.003	0.72	0.0	0.05	14.01	0.00	2.243	12.30	0.10	3.9	96.1	0.0	0.14	0.63	0.67	0.98	3.4	0.003	0.75	0.0	0.05	16.66	0.01	2.398	10.85	2.34	3.7	96.3	0.0	0.65	0.61	0.68	0.80	1.48	9205	1158	5	0	1	0	0	logfile
✔	8CR2	16802	2024-11-14	2023-03-07	4.2	4.42	4.19	5.1	0.004	1.07	1.0	0.06	13.24	0.01	1.914	20.12	0.00	5.8	94.2	0.0	-3.18	0.41	0.29	—	4.4	0.004	0.86	0.0	0.05	14.17	0.00	2.358	13.31	0.00	3.5	96.5	0.0	0.33	1.44	0.64	0.68	—	6838	855	5	0	1	0	0	logfile
✔	8GEE	29967	2024-11-14	2023-03-06	3.7	3.96	3.74	3.9	0.016	0.82	0.0	0.04	12.17	0.01	2.199	7.10	0.00	1.4	98.6	0.0	1.70	0.70	0.80	2.54	3.9	0.003	0.48	0.0	0.04	14.01	0.00	2.564	5.89	2.16	1.5	98.5	0.0	1.84	0.31	0.70	0.80	1.53	6304	933	5	0	1	1	0	logfile
✔	8GE3	29954	2024-11-14	2023-03-06	3.3	3.68	3.44	3.6	0.003	0.48	0.0	0.04	12.03	0.00	2.229	5.84	0.00	1.6	98.4	0.0	1.74	0.70	0.84	3.43	3.6	0.003	0.51	0.0	0.04	13.94	0.00	2.502	5.05	2.32	2.1	97.9	0.0	1.64	0.29	0.70	0.85	2.83	6606	906	5	0	1	0	0	logfile
✔	8GE4	29955	2024-11-14	2023-03-06	3.3	3.62	3.40	3.6	0.003	0.45	0.0	0.04	12.45	0.00	2.248	5.38	0.00	2.0	98.0	0.0	1.63	0.70	0.85	3.35	3.6	0.003	0.49	0.0	0.04	14.49	0.00	2.606	5.38	2.54	2.1	97.9	0.0	1.66	0.28	0.71	0.85	2.77	6646	901	6	0	1	1	0	logfile
✔	8GDZ	29951	2024-11-14	2023-03-06	3.5	3.86	3.64	3.8	0.003	0.51	0.0	0.04	12.96	0.00	2.270	6.85	0.00	1.2	98.8	0.0	1.42	0.68	0.82	2.65	3.8	0.003	0.50	0.0	0.04	14.78	0.00	2.534	4.31	2.51	0.8	99.2	0.0	1.53	0.30	0.68	0.82	2.21	6320	904	5	0	1	0	0	logfile
✔	8GE5	29956	2024-11-14	2023-03-06	3.2	3.63	3.40	3.6	0.003	0.50	0.0	0.04	12.21	0.00	2.240	5.41	0.00	2.1	97.9	0.0	1.93	0.71	0.84	3.34	3.6	0.003	0.52	0.0	0.04	14.18	0.00	2.489	4.25	1.85	1.4	98.6	0.0	1.81	1.10	0.71	0.84	2.61	6691	901	5	0	1	0	0	logfile
✔	8iM7	35572	2024-11-16	2023-03-06	3.4	3.70	3.43	3.6	0.010	1.06	0.0	0.06	14.52	0.01	2.245	3.77	0.90	6.7	93.3	0.0	-4.06	0.66	0.83	3.90	3.6	0.004	0.64	0.0	0.04	13.96	0.00	2.505	6.35	2.62	4.8	95.2	0.0	0.27	1.27	0.66	0.85	2.52	10587	1289	13	0	25	0	0	logfile
✔	8GED	29966	2024-11-14	2023-03-06	3.5	3.89	3.70	3.9	0.003	0.48	0.0	0.04	12.40	0.00	2.251	7.07	0.00	1.4	98.6	0.0	1.82	0.71	0.78	2.55	3.9	0.003	0.50	0.0	0.04	14.24	0.00	2.589	6.24	3.75	1.6	98.4	0.0	1.81	0.32	0.69	0.79	2.44	6505	946	5	0	1	0	0	logfile
✔	8GEi	29971	2024-11-14	2023-03-06	4.1	4.35	4.10	4.2	0.003	0.54	0.0	0.04	10.59	0.00	2.226	4.55	0.00	3.1	96.9	0.0	1.03	0.71	0.79	—	4.2	0.004	0.55	0.0	0.04	9.18	0.00	2.603	5.01	0.00	3.8	96.2	0.0	0.91	1.13	0.71	0.80	—	5452	934	5	0	1	0	0	logfile
✔	8GEF	29968	2024-11-14	2023-03-06	3.8	4.05	3.84	4.0	0.014	0.96	0.0	0.04	13.65	0.00	2.302	7.38	1.42	1.2	98.8	0.0	2.13	0.71	0.80	2.52	4.0	0.002	0.45	0.0	0.04	13.52	0.00	2.608	5.25	2.36	1.2	98.8	0.0	2.37	1.09	0.71	0.79	2.15	6216	941	5	0	1	0	0	logfile
✔	8GE7	29959	2024-11-14	2023-03-06	3.4	3.72	3.47	3.7	0.003	0.53	0.0	0.04	12.65	0.00	2.197	7.44	0.00	2.2	97.8	0.0	0.95	0.72	0.84	3.27	3.7	0.004	0.52	0.0	0.04	14.27	0.00	2.423	5.01	1.73	2.5	97.5	0.0	1.14	0.29	0.72	0.85	2.56	6617	895	5	0	1	0	0	logfile
✔	8GE8	29960	2024-11-14	2023-03-06	3.4	3.74	3.50	3.7	0.003	0.51	0.0	0.04	11.59	0.00	2.208	7.70	0.00	1.8	98.2	0.0	1.20	0.71	0.83	3.43	3.7	0.003	0.51	0.0	0.04	13.54	0.00	2.453	6.35	2.15	1.7	98.3	0.0	1.47	0.35	0.71	0.83	3.09	6557	903	5	0	1	1	0	logfile
✔	8GEG	29969	2024-11-14	2023-03-06	3.8	4.13	3.89	4.0	0.003	0.58	0.0	0.04	12.03	0.00	2.221	8.37	0.00	2.2	97.8	0.0	1.48	0.71	0.79	2.69	4.0	0.003	0.57	0.0	0.04	14.17	0.00	2.507	8.20	3.69	2.1	97.9	0.0	1.74	1.13	0.72	0.80	2.02	6481	972	5	0	1	0	0	logfile
✔	8GEJ	29972	2024-11-14	2023-03-06	4.2	4.48	4.17	4.2	0.004	0.50	0.0	0.04	8.38	0.00	2.210	6.00	0.00	3.2	96.8	0.0	1.24	0.71	0.79	—	4.2	0.003	0.47	0.0	0.04	8.64	0.00	2.612	3.35	0.00	3.9	96.1	0.0	0.62	1.10	0.71	0.79	—	5436	950	5	0	1	0	0	logfile
✔	8GE1	29952	2024-11-14	2023-03-06	3.4	3.78	3.54	3.8	0.003	0.51	0.0	0.04	12.49	0.00	2.203	5.64	0.00	2.2	97.8	0.0	1.67	0.71	0.85	3.09	3.8	0.003	0.51	0.0	0.04	14.17	0.00	2.571	4.82	2.36	2.0	98.0	0.0	2.05	0.29	0.67	0.83	2.23	6464	908	5	0	1	0	0	logfile
✔	8GEH	29970	2024-11-14	2023-03-06	4.0	4.24	4.00	4.1	0.003	0.43	0.0	0.04	10.85	0.00	2.276	4.83	0.00	2.2	97.8	0.0	1.54	0.72	0.80	—	4.1	0.003	0.50	0.0	0.04	12.09	0.00	2.613	6.76	1.57	2.5	97.5	0.0	2.10	1.53	0.72	0.80	—	5995	960	5	0	1	0	0	logfile

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