Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GDZ	29951	2024-11-14	2023-03-06	3.5	3.86	3.64	3.8	0.003	0.51	0.0	0.04	12.96	0.00	2.270	6.85	0.00	1.2	98.8	0.0	1.42	0.68	0.82	2.65	3.8	0.003	0.50	0.0	0.04	14.78	0.00	2.534	4.31	2.51	0.8	99.2	0.0	1.53	0.30	0.68	0.82	2.21	6320	904	5	0	1	0	0	logfile
✔	8GEE	29967	2024-11-14	2023-03-06	3.7	3.96	3.74	3.9	0.016	0.82	0.0	0.04	12.17	0.01	2.199	7.10	0.00	1.4	98.6	0.0	1.70	0.70	0.80	2.54	3.9	0.003	0.48	0.0	0.04	14.01	0.00	2.564	5.89	2.16	1.5	98.5	0.0	1.84	0.31	0.70	0.80	1.53	6304	933	5	0	1	1	0	logfile
✔	8GE3	29954	2024-11-14	2023-03-06	3.3	3.68	3.44	3.6	0.003	0.48	0.0	0.04	12.03	0.00	2.229	5.84	0.00	1.6	98.4	0.0	1.74	0.70	0.84	3.43	3.6	0.003	0.51	0.0	0.04	13.94	0.00	2.502	5.05	2.32	2.1	97.9	0.0	1.64	0.29	0.70	0.85	2.83	6606	906	5	0	1	0	0	logfile
✔	8CQD	16796	2024-11-16	2023-03-05	3.54	3.76	3.56	3.8	0.005	0.61	0.0	0.04	9.17	0.00	2.223	3.60	0.00	1.9	98.1	0.0	2.57	0.57	0.73	0.67	3.8	0.004	0.61	0.0	0.04	14.59	0.00	2.612	8.25	2.17	0.9	99.1	0.0	1.96	0.67	0.59	0.75	0.67	10828	1364	12	0	6	0	0	logfile
✔	8iLV	35547	2024-11-16	2023-03-04	3.19	3.48	3.26	3.5	0.003	0.53	0.0	0.04	18.37	0.00	2.073	8.16	0.26	3.9	96.1	0.0	-0.78	0.73	0.79	2.42	3.5	0.003	0.55	0.0	0.04	18.45	0.00	2.205	9.43	2.56	4.2	95.8	0.0	0.55	1.11	0.72	0.78	2.28	10218	1236	3	0	1	4	0	logfile
✔	8iLQ	35540	2024-11-14	2023-03-04	4.3	4.22	—	4.2	0.003	0.68	0.0	0.05	18.13	0.00	2.208	9.06	0.23	13.1	86.7	0.2	-2.78	0.53	0.74	—	4.2	0.003	0.72	0.0	0.04	14.13	0.00	2.532	6.78	0.12	12.9	86.5	0.6	-2.92	0.44	0.53	0.81	—	7729	1010	5	0	6	0	0	logfile
✔	8CQB	16794	2024-11-14	2023-03-04	3.7	3.96	3.70	3.9	0.003	0.64	0.0	0.04	18.67	0.00	1.193	11.28	1.29	6.1	93.5	0.4	-0.44	0.68	0.74	1.89	3.9	0.003	0.77	0.0	0.04	19.04	0.00	1.910	12.06	1.53	6.2	93.4	0.4	-0.19	0.58	0.67	0.71	1.13	7688	956	6	2	4	0	0	logfile
✔	8iLS	35545	2024-11-16	2023-03-04	3.1	3.21	3.09	3.2	0.006	0.55	0.0	0.04	14.93	0.00	1.993	25.11	0.17	6.6	93.3	0.1	-1.20	0.73	0.88	3.51	3.2	0.005	0.60	0.0	0.04	16.26	0.00	2.469	6.53	1.74	5.4	94.6	0.0	0.01	0.93	0.72	0.89	2.62	10374	1253	3	0	1	8	0	logfile
✔	8GDA	29944	2024-11-16	2023-03-03	3.3	2.59	3.24	3.3	0.007	0.69	0.0	0.05	13.62	0.00	2.207	5.13	0.41	4.0	96.0	0.0	-0.62	0.78	0.78	3.11	3.2	0.003	0.56	0.0	0.04	15.36	0.00	2.521	4.11	1.64	3.5	96.5	0.0	0.80	0.44	0.82	0.81	1.78	7650	1036	6	0	1	0	0	logfile
✔	8GDC	29946	2024-11-14	2023-03-03	3.5	2.32	3.47	3.6	0.012	1.46	10.0	0.12	13.13	0.01	2.289	9.08	0.62	8.5	91.5	0.0	-3.62	0.72	0.67	2.49	2.1	0.002	0.61	0.0	0.04	14.55	0.00	2.600	5.34	2.48	2.2	97.8	0.0	-0.18	1.12	0.72	0.68	1.70	5657	810	5	0	1	0	0	logfile
✔	8GD9	29943	2024-11-16	2023-03-03	3.2	2.13	3.11	1.9	0.009	1.04	0.0	0.06	13.20	0.01	2.224	4.73	0.30	4.8	95.2	0.0	-1.07	0.78	0.76	4.18	1.9	0.003	0.57	0.0	0.04	15.03	0.00	2.543	3.44	2.74	3.5	96.5	0.0	1.27	0.41	0.79	0.79	3.25	7309	1015	6	0	1	0	0	logfile
✔	8GDB	29945	2024-11-14	2023-03-03	3.1	3.24	3.00	3.2	0.005	0.80	0.0	0.05	14.28	0.01	2.255	3.73	0.28	4.7	95.3	0.0	-0.50	0.74	0.84	3.99	3.2	0.003	0.54	0.0	0.04	14.74	0.00	2.515	2.65	1.39	4.1	95.9	0.0	1.06	1.11	0.76	0.87	3.11	7612	1037	6	0	1	0	0	logfile
✔	8GCN	29936	2024-11-14	2023-03-02	3.95	4.86	3.95	4.3	0.003	0.78	0.0	0.04	18.91	0.00	2.118	19.49	0.13	3.3	96.7	0.0	0.47	0.90	0.83	0.54	4.3	0.003	0.81	0.0	0.04	19.17	0.00	2.510	12.46	2.78	3.0	97.0	0.0	1.07	0.98	0.90	0.82	0.66	7173	919	2	0	0	0	0	logfile
✔	8CPD	16779	2024-11-15	2023-03-02	3.46	3.69	3.58	3.7	0.005	0.83	0.0	0.04	17.07	0.01	2.123	17.84	0.68	4.6	95.4	0.0	0.62	0.70	0.75	0.83	3.7	0.003	0.79	0.0	0.04	17.92	0.00	2.460	12.68	1.81	3.6	96.4	0.0	1.09	0.94	0.70	0.76	1.01	8030	994	4	0	0	0	0	logfile
✔	8GCP	29940	2024-11-15	2023-03-02	3.1	2.18	3.10	2.0	0.011	1.26	2.0	0.08	13.82	0.01	2.242	7.74	0.67	7.8	92.2	0.0	-2.39	0.75	0.75	3.12	2.0	0.002	0.58	0.0	0.04	15.55	0.00	2.616	4.63	1.21	3.0	97.0	0.0	0.25	0.97	0.76	0.77	2.46	7921	1108	6	0	1	0	0	logfile
✔	8CPE	16780	2024-11-14	2023-03-02	4.0	3.90	2.90	4.2	0.002	0.93	0.0	0.06	12.17	0.00	2.224	3.26	0.00	4.1	95.9	0.0	-3.80	0.54	0.71	—	4.3	0.002	0.67	0.0	0.05	14.31	0.00	2.400	5.26	1.21	10.1	89.9	0.0	-4.61	1.51	0.52	0.70	—	5520	385	5	0	0	0	2615	logfile
✔	8GCL	29934	2024-11-14	2023-03-02	2.89	3.01	2.90	3.1	0.010	0.87	0.0	0.07	13.22	0.01	2.391	4.37	2.78	3.8	96.2	0.0	-2.60	0.53	0.75	3.52	3.1	0.005	0.59	0.0	0.04	14.23	0.00	2.629	7.47	0.56	3.4	96.6	0.0	1.69	0.30	0.62	0.81	3.26	7016	956	4	0	0	0	0	logfile
✔	8GCR	29941	2024-11-14	2023-03-02	3.38	3.64	3.37	3.6	0.005	0.76	0.0	0.05	14.74	0.01	2.228	8.31	0.00	4.4	95.6	0.0	-1.53	0.76	0.76	2.33	3.6	0.003	0.57	0.0	0.04	16.51	0.00	2.376	8.86	1.73	3.6	96.4	0.0	-0.02	0.37	0.77	0.78	1.99	7206	877	5	0	3	0	0	logfile
✔	8GCM	29935	2024-11-14	2023-03-02	3.5	4.05	3.54	4.0	0.010	1.25	2.0	0.07	14.66	0.01	2.223	7.19	0.77	8.9	91.1	0.0	-3.35	0.69	0.77	2.44	4.0	0.003	0.64	0.0	0.04	15.41	0.00	2.479	5.41	2.31	5.3	94.7	0.0	-1.26	1.20	0.68	0.77	1.74	7508	1077	6	0	1	0	0	logfile
✔	8iKS	35520	2024-11-13	2023-03-01	3.75	3.73	3.52	3.2	0.018	4.07	8.0	0.24	18.13	0.00	1.885	50.36	0.00	8.3	91.7	0.0	-5.59	0.34	0.66	1.82	3.2	0.032	3.03	0.0	0.15	24.79	0.01	2.274	78.19	18.75	50.0	50.0	0.0	-6.94	1.63	0.35	0.70	2.00	1024	144	16	0	0	0	0	logfile

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