Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B9R	44389	2024-11-14	2024-04-03	3.7	4.67	3.13	4.1	0.002	0.68	0.0	0.04	11.04	0.00	2.150	2.60	0.00	0.9	99.1	0.0	0.53	0.69	0.69	0.82	4.1	0.003	0.68	0.0	0.04	15.55	0.00	2.279	9.53	1.56	1.4	98.6	0.0	1.37	1.44	0.71	0.76	1.53	6928	444	4	0	0	0	3436	logfile
✔	9BAA	44402	2024-11-14	2024-04-03	3.39	3.77	3.55	3.7	0.004	0.63	0.0	0.04	14.98	0.00	2.231	9.22	0.12	8.1	91.7	0.2	1.06	0.63	0.81	1.62	3.7	0.003	0.63	0.0	0.04	16.69	0.00	2.339	8.28	2.71	8.1	91.7	0.2	1.65	0.33	0.61	0.81	1.15	7771	994	2	0	0	0	0	logfile
✔	9BA5	44396	2024-11-15	2024-04-03	3.51	2.38	3.57	3.6	0.011	1.26	2.0	0.07	12.94	0.01	2.389	2.35	0.00	5.3	94.7	0.0	-1.42	0.61	0.60	1.98	3.6	0.004	0.61	0.0	0.04	14.52	0.00	2.592	7.73	1.87	2.5	97.5	0.0	-0.20	1.15	0.65	0.61	1.76	9012	1146	4	0	10	0	0	logfile
✔	9B9G	44382	2024-11-18	2024-04-02	3.5	4.01	3.71	3.5	0.003	0.73	0.0	0.04	16.80	0.00	2.073	11.89	2.32	4.7	95.3	0.0	0.73	0.81	0.78	0.84	3.5	0.003	0.72	0.0	0.04	17.18	0.00	2.395	9.52	2.56	4.8	95.1	0.0	1.18	0.41	0.81	0.79	0.79	48676	6075	12	0	8	0	0	logfile
✔	8YWX	39646	2024-11-14	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.003	0.79	0.0	0.05	14.88	0.00	2.244	8.78	3.37	5.2	94.8	0.0	-1.53	2.30	0.68	0.76	1.27	4803	623	3	0	0	0	0	logfile
✔	9B8X	44361	2024-11-14	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.003	0.51	0.0	0.04	12.14	0.00	2.308	4.14	1.75	2.8	97.2	0.0	2.43	0.51	0.61	0.88	2.90	7564	993	2	0	2	0	0	logfile
✔	9B91	44365	2024-11-14	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.005	0.97	2.0	0.04	13.63	0.01	2.323	6.95	2.48	2.8	97.2	0.0	2.12	0.60	0.60	0.86	2.24	7511	993	2	0	3	0	0	logfile
✔	9B8Z	44363	2024-11-14	2024-04-01	3.4	4.06	3.36	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.006	0.64	0.0	0.04	14.28	0.00	2.235	7.07	2.43	4.0	96.0	0.0	2.10	0.54	0.69	0.87	1.70	7509	978	2	0	3	0	0	logfile
✔	9B8R	44356	2024-11-15	2024-03-31	3.5	3.75	3.63	3.7	0.015	1.75	3.0	0.11	15.44	0.02	2.205	9.34	2.06	4.3	94.6	1.1	-1.71	0.62	0.56	1.83	3.7	0.003	0.69	0.0	0.04	17.42	0.00	2.460	9.13	2.16	2.6	97.4	0.0	1.00	1.36	0.70	0.76	1.85	9425	1119	4	22	1	0	0	logfile
✔	9B8Q	44352	2024-11-16	2024-03-31	3.8	4.19	4.05	4.2	0.005	0.62	0.0	0.04	16.29	0.00	2.034	10.39	3.66	4.3	95.7	0.1	2.27	0.54	0.70	0.62	4.1	0.004	0.66	0.0	0.04	17.48	0.00	2.446	8.99	5.00	3.4	96.6	0.1	3.18	0.56	0.54	0.71	0.36	12348	1886	9	0	0	0	0	logfile
✔	9B8T	44358	2024-11-18	2024-03-31	2.95	3.15	3.00	3.1	0.005	0.96	0.0	0.05	18.83	0.01	2.085	6.98	4.30	4.6	95.4	0.0	-1.97	0.67	0.69	1.20	3.1	0.005	0.75	0.0	0.04	19.26	0.00	2.206	14.30	4.18	4.2	95.8	0.0	-0.91	1.00	0.69	0.71	1.42	16399	1929	7	50	3	0	0	logfile
✔	8YWA	39627	2024-11-18	2024-03-30	3.14	3.36	3.17	3.4	0.004	0.61	0.0	0.04	12.54	0.01	2.184	10.12	0.14	5.9	93.9	0.2	1.18	0.51	0.56	1.26	3.3	0.003	0.54	0.0	0.04	14.68	0.00	2.248	5.82	2.35	4.5	95.4	0.1	1.37	0.97	0.58	0.67	2.32	16619	1486	11	0	9	0	6751	logfile
✔	8YW3	39621	2024-11-15	2024-03-29	2.68	3.44	2.77	3.3	0.004	0.66	0.0	0.04	17.97	0.00	2.163	11.08	7.83	3.2	96.8	0.0	0.63	0.66	0.77	2.00	3.3	0.004	0.65	0.0	0.04	17.82	0.00	2.502	7.62	3.56	4.0	96.0	0.0	0.65	0.27	0.66	0.77	2.41	9231	1160	6	0	0	0	0	logfile
✔	8YW4	39622	2024-11-15	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.006	0.71	0.0	0.04	18.44	0.00	2.453	7.64	3.47	5.8	94.0	0.2	0.65	1.17	0.67	0.85	1.96	8619	1082	6	0	0	0	0	logfile
✔	8YW5	39623	2024-11-15	2024-03-29	2.84	3.09	2.86	3.1	0.003	0.50	0.0	0.04	11.96	0.00	2.064	4.62	3.79	4.6	95.4	0.0	-0.41	0.61	0.80	3.98	3.1	0.003	0.58	0.0	0.04	14.97	0.00	2.532	4.16	2.93	4.5	95.5	0.0	1.36	0.32	0.61	0.81	3.29	8937	1157	6	0	0	0	0	logfile
✔	8YVU	39614	2024-11-14	2024-03-29	3.9	4.30	3.86	4.2	0.003	0.71	0.0	0.04	13.76	0.00	2.277	12.74	0.00	4.1	95.5	0.4	1.38	0.50	0.63	0.56	4.2	0.003	0.73	0.0	0.04	16.67	0.00	2.598	11.13	4.35	4.5	95.3	0.2	1.36	0.53	0.54	0.67	0.21	4216	530	10	0	2	0	0	logfile
✔	9EUT	19981	2024-11-16	2024-03-28	2.95	3.19	—	3.1	0.005	0.76	0.0	0.05	12.33	0.01	2.158	3.55	0.56	2.2	97.8	0.0	-0.11	0.71	0.78	2.76	3.2	0.003	0.67	0.0	0.04	15.44	0.00	2.566	7.55	1.53	1.7	98.3	0.0	1.59	1.13	0.72	0.80	2.65	11456	1456	4	0	2	0	0	logfile
✔	9EUY	19989	2024-11-15	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.3	0.003	0.93	0.0	0.04	16.08	0.00	1.321	6.69	2.27	1.6	98.4	0.0	1.77	0.65	0.67	0.83	2.64	7846	984	4	0	2	0	0	logfile
✔	9EUP	19979	2024-11-18	2024-03-27	3.0	3.45	3.02	3.4	0.010	0.82	0.0	0.05	13.77	0.01	2.130	5.45	0.12	3.3	96.7	0.0	-1.46	0.67	0.83	4.18	3.4	0.004	0.57	0.0	0.04	14.30	0.01	2.119	4.72	1.11	3.1	96.9	0.0	0.43	0.34	0.56	0.77	3.49	14966	965	4	0	6	0	7364	logfile
✔	8YUU	39583	2024-11-15	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.002	0.54	0.0	0.04	14.26	0.00	2.551	4.23	1.13	1.8	98.2	0.0	2.08	0.57	0.65	0.82	3.39	9037	1145	6	0	2	0	0	logfile

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