Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YUT	39582	2024-11-15	2024-03-27	2.7	2.92	2.83	2.9	0.008	0.81	0.0	0.06	10.59	0.00	2.231	4.63	0.00	1.9	98.1	0.0	1.32	0.63	0.77	3.26	2.9	0.003	0.57	0.0	0.04	14.41	0.00	2.440	3.41	2.02	2.0	98.0	0.0	2.01	0.60	0.62	0.79	2.85	8229	1041	6	0	2	0	0	logfile
✔	8YUU	39583	2024-11-15	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.002	0.54	0.0	0.04	14.26	0.00	2.551	4.23	1.13	1.8	98.2	0.0	2.08	0.57	0.65	0.82	3.39	9037	1145	6	0	2	0	0	logfile
✔	9ES9	19940	2024-11-18	2024-03-25	2.33	3.04	2.37	2.8	0.003	0.53	0.0	0.04	12.29	0.00	1.994	3.25	0.61	3.2	96.8	0.0	0.37	0.77	0.88	4.87	2.9	0.003	0.64	0.0	0.04	14.94	0.00	2.529	2.55	0.85	3.2	96.8	0.0	1.82	1.26	0.76	0.89	3.62	16450	1974	40	0	24	206	0	logfile
✔	9ES7	19938	2024-11-18	2024-03-25	1.94	2.49	1.96	2.2	0.003	0.51	0.0	0.04	12.59	0.00	1.967	1.81	0.37	1.6	98.4	0.0	1.66	0.83	0.91	5.64	2.2	0.003	0.62	0.0	0.04	14.75	0.00	2.518	2.09	0.97	2.0	98.0	0.0	2.37	0.38	0.80	0.91	4.21	16413	1950	46	0	22	329	0	logfile
✔	9ERM	19926	2024-11-14	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.002	0.62	0.0	0.05	16.47	0.00	2.640	3.07	1.52	2.5	97.5	0.0	-1.27	0.54	0.43	0.93	6.40	2870	375	5	0	0	0	0	logfile
✔	9ERN	19927	2024-11-14	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.004	0.65	0.0	0.05	16.39	0.00	2.595	1.99	1.26	1.1	98.9	0.0	-1.72	0.98	0.43	0.91	5.64	3444	450	6	0	0	0	0	logfile
✔	9B69	44250	2024-11-19	2024-03-23	3.69	3.29	3.52	3.3	0.003	0.49	0.0	0.04	16.28	0.00	2.177	5.70	0.36	3.0	97.0	0.0	0.73	0.67	0.80	3.44	3.3	0.004	0.56	0.0	0.04	15.24	0.00	2.394	6.07	3.91	3.8	96.2	0.0	0.27	0.91	0.69	0.82	3.55	11370	1496	9	0	11	0	0	logfile
✔	9B68	44249	2024-11-19	2024-03-23	3.6	3.60	3.54	3.6	0.003	0.61	0.0	0.04	16.03	0.00	2.203	6.44	0.27	2.9	97.1	0.0	-0.07	0.73	0.82	3.47	3.6	0.002	0.55	0.0	0.04	15.21	0.00	2.448	5.02	2.31	2.8	97.2	0.0	0.46	0.40	0.74	0.83	3.03	11364	1496	9	0	11	0	0	logfile
✔	9B62	44235	2024-11-19	2024-03-23	2.9	3.27	—	3.1	0.003	0.44	0.0	0.04	10.59	0.00	1.315	4.24	0.62	3.5	96.5	0.0	1.28	0.81	0.84	3.78	3.1	0.003	0.55	0.0	0.04	14.23	0.00	1.849	3.72	1.38	2.8	97.2	0.0	1.24	1.68	0.83	0.87	3.09	19287	2414	9	0	4	0	0	logfile
✔	9B61	44234	2024-11-19	2024-03-23	2.81	3.15	2.76	3.1	0.005	0.80	0.0	0.04	17.30	0.00	2.154	11.12	3.10	2.7	97.3	0.0	1.40	0.63	0.78	1.89	3.1	0.003	0.69	0.0	0.04	17.27	0.00	2.502	9.67	2.33	2.5	97.5	0.0	1.61	0.40	0.65	0.82	1.88	18447	2384	8	0	0	0	0	logfile
✔	9B6A	44251	2024-11-19	2024-03-23	3.35	2.74	3.31	3.1	0.003	0.50	0.0	0.04	16.79	0.00	2.196	7.53	0.26	2.1	97.9	0.0	2.10	0.57	0.79	2.33	3.1	0.002	0.49	0.0	0.04	16.93	0.00	2.499	7.40	2.16	2.4	97.6	0.0	2.29	0.35	0.59	0.81	2.41	18493	2378	8	0	0	0	0	logfile
✔	9B5E	44209	2024-11-16	2024-03-22	2.81	3.27	2.83	3.1	0.003	0.44	0.0	0.04	9.40	0.00	2.037	1.39	1.15	1.7	98.3	0.0	1.33	0.67	0.74	3.55	3.1	0.004	0.53	0.0	0.04	13.17	0.00	2.000	2.62	2.21	1.6	98.4	0.0	1.57	1.55	0.76	0.85	3.37	10128	1283	6	0	4	0	0	logfile
✔	9B5S	44223	2024-11-15	2024-03-22	2.96	3.46	3.02	3.3	0.003	0.46	0.0	0.04	9.82	0.00	1.986	1.18	1.21	2.0	98.0	0.0	1.20	0.79	0.85	3.45	3.3	0.004	0.57	0.0	0.04	13.50	0.00	1.898	3.55	1.92	2.4	97.6	0.0	1.08	1.17	0.77	0.84	2.97	8935	1133	5	0	4	0	0	logfile
✔	9B5X	44228	2024-11-15	2024-03-22	4.16	4.88	4.31	4.2	0.002	0.44	0.0	0.04	9.37	0.00	2.006	2.74	1.51	1.9	98.1	0.0	0.97	0.89	0.81	—	4.2	0.002	0.54	0.0	0.04	10.93	0.00	1.921	6.75	0.00	2.5	97.5	0.0	1.66	1.30	0.91	0.84	—	9527	1207	5	0	4	0	0	logfile
✔	9B5K	44215	2024-11-16	2024-03-22	3.16	3.77	3.31	3.6	0.003	0.45	0.0	0.04	9.40	0.00	2.039	1.58	1.33	2.1	97.9	0.0	1.73	0.77	0.81	2.78	3.6	0.003	0.53	0.0	0.04	12.99	0.00	2.058	3.81	1.68	2.0	98.0	0.0	1.66	2.46	0.74	0.78	2.33	10128	1283	6	0	4	0	0	logfile
✔	9B55	44200	2024-11-14	2024-03-22	3.23	3.71	3.23	3.6	0.004	0.50	0.0	0.04	9.79	0.00	1.834	2.89	0.18	4.6	95.4	0.0	0.82	0.79	0.84	2.87	3.6	0.004	0.52	0.0	0.04	12.54	0.00	2.441	3.82	0.92	3.7	96.3	0.0	1.17	1.11	0.74	0.81	2.60	4871	599	4	0	1	0	0	logfile
✔	9B5H	44212	2024-11-15	2024-03-22	2.69	3.13	2.69	3.0	0.003	0.50	0.0	0.04	10.01	0.00	1.969	1.16	0.85	1.8	98.2	0.0	1.11	0.69	0.79	4.31	3.0	0.003	0.50	0.0	0.04	13.21	0.00	2.073	3.21	1.32	1.6	98.4	0.0	1.50	1.09	0.70	0.81	3.67	9536	1209	7	0	5	0	0	logfile
✔	9B56	44201	2024-11-14	2024-03-22	3.35	3.89	3.39	3.8	0.003	0.46	0.0	0.04	10.30	0.00	1.794	2.89	1.29	5.2	94.8	0.0	1.28	0.81	0.80	2.19	3.8	0.002	0.58	0.0	0.04	13.28	0.00	2.530	5.99	1.47	3.2	96.8	0.0	1.37	0.54	0.84	0.84	1.90	4871	599	4	0	1	0	0	logfile
✔	9B5J	44214	2024-11-15	2024-03-22	2.86	3.33	2.88	3.2	0.004	0.46	0.0	0.04	9.89	0.00	2.161	1.53	1.04	2.9	97.1	0.0	1.00	0.68	0.78	3.39	3.2	0.002	0.51	0.0	0.04	13.71	0.00	2.453	3.32	0.94	1.7	98.3	0.0	1.30	1.11	0.67	0.78	2.76	9525	1209	6	0	2	0	0	logfile
✔	9B59	44204	2024-11-14	2024-03-22	3.49	3.95	3.48	3.8	0.003	0.43	0.0	0.04	9.73	0.00	1.779	1.86	0.74	3.4	96.6	0.0	1.74	0.82	0.79	1.99	3.8	0.004	0.57	0.0	0.04	13.24	0.00	2.429	5.58	1.66	3.7	96.3	0.0	1.28	0.61	0.83	0.83	1.67	4871	599	4	0	1	0	0	logfile

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