Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B5C	44207	2024-11-15	2024-03-22	2.5	3.00	2.51	2.8	0.003	0.48	0.0	0.04	10.21	0.00	2.036	1.37	0.66	1.7	98.3	0.0	1.33	0.70	0.80	4.37	2.8	0.003	0.49	0.0	0.04	13.42	0.00	2.027	3.06	1.32	1.2	98.8	0.0	1.70	0.26	0.72	0.82	3.53	9536	1209	6	0	4	0	0	logfile
✔	9B58	44203	2024-11-14	2024-03-22	3.39	3.89	3.38	3.8	0.003	0.45	0.0	0.04	10.33	0.00	1.812	3.00	1.10	4.2	95.8	0.0	0.81	0.81	0.81	2.15	3.8	0.004	0.62	0.0	0.04	13.59	0.00	2.455	6.71	1.84	3.9	96.1	0.0	0.57	0.59	0.85	0.85	1.54	4871	599	4	0	1	0	0	logfile
✔	9B5U	44225	2024-11-15	2024-03-22	3.67	4.16	3.87	3.9	0.004	0.47	0.0	0.04	9.22	0.00	1.989	3.01	1.70	1.7	98.3	0.0	1.42	0.83	0.82	2.51	3.9	0.003	0.59	0.0	0.04	12.42	0.00	1.867	4.80	1.04	1.9	98.1	0.0	1.81	1.27	0.85	0.84	1.53	9527	1207	5	0	4	0	0	logfile
✔	9B5N	44218	2024-11-15	2024-03-22	3.12	3.59	3.17	3.5	0.003	0.47	0.0	0.04	9.09	0.00	2.000	2.16	0.66	2.5	97.2	0.3	1.07	0.79	0.84	2.92	3.5	0.003	0.56	0.0	0.04	13.08	0.00	1.966	4.17	2.17	2.3	97.7	0.1	1.25	1.64	0.74	0.81	2.28	9527	1207	5	0	4	0	0	logfile
✔	9B5S	44223	2024-11-15	2024-03-22	2.96	3.46	3.02	3.3	0.003	0.46	0.0	0.04	9.82	0.00	1.986	1.18	1.21	2.0	98.0	0.0	1.20	0.79	0.85	3.45	3.3	0.004	0.57	0.0	0.04	13.50	0.00	1.898	3.55	1.92	2.4	97.6	0.0	1.08	1.17	0.77	0.84	2.97	8935	1133	5	0	4	0	0	logfile
✔	9B5B	44206	2024-11-14	2024-03-22	3.31	3.84	3.35	3.7	0.003	0.44	0.0	0.04	9.36	0.00	1.782	2.27	1.29	3.9	96.1	0.0	1.85	0.82	0.82	2.04	3.7	0.004	0.57	0.0	0.04	12.45	0.00	2.474	6.20	1.84	3.5	96.5	0.0	2.10	1.62	0.82	0.84	2.00	4871	599	4	0	1	0	0	logfile
✔	9B5A	44205	2024-11-14	2024-03-22	3.65	4.13	3.65	4.0	0.003	0.47	0.0	0.04	10.28	0.00	1.776	4.75	1.66	4.7	95.3	0.0	1.20	0.80	0.74	1.79	4.0	0.003	0.52	0.0	0.04	12.97	0.00	2.601	6.92	1.10	3.2	96.8	0.0	0.95	1.68	0.84	0.80	1.63	4871	599	4	0	1	0	0	logfile
✔	9B5H	44212	2024-11-15	2024-03-22	2.69	3.13	2.69	3.0	0.003	0.50	0.0	0.04	10.01	0.00	1.969	1.16	0.85	1.8	98.2	0.0	1.11	0.69	0.79	4.31	3.0	0.003	0.50	0.0	0.04	13.21	0.00	2.073	3.21	1.32	1.6	98.4	0.0	1.50	1.09	0.70	0.81	3.67	9536	1209	7	0	5	0	0	logfile
✔	9B5J	44214	2024-11-15	2024-03-22	2.86	3.33	2.88	3.2	0.004	0.46	0.0	0.04	9.89	0.00	2.161	1.53	1.04	2.9	97.1	0.0	1.00	0.68	0.78	3.39	3.2	0.002	0.51	0.0	0.04	13.71	0.00	2.453	3.32	0.94	1.7	98.3	0.0	1.30	1.11	0.67	0.78	2.76	9525	1209	6	0	2	0	0	logfile
✔	9B57	44202	2024-11-14	2024-03-22	3.37	3.88	3.36	3.7	0.003	0.47	0.0	0.04	10.22	0.00	1.831	2.48	1.29	4.4	95.6	0.0	1.13	0.81	0.80	2.15	3.7	0.003	0.57	0.0	0.04	13.49	0.00	2.499	6.40	2.39	3.9	96.1	0.0	1.27	1.21	0.81	0.81	1.51	4871	599	4	0	1	0	0	logfile
✔	9B5P	44220	2024-11-15	2024-03-22	3.08	3.54	3.11	3.4	0.003	0.45	0.0	0.04	9.39	0.00	2.008	1.97	1.51	2.0	98.0	0.0	1.30	0.76	0.84	2.98	3.4	0.003	0.54	0.0	0.04	12.97	0.00	1.977	4.11	1.61	2.1	97.9	0.0	1.17	2.19	0.78	0.86	2.52	8935	1133	5	0	4	0	0	logfile
✔	9B5o	44219	2024-11-15	2024-03-22	3.19	3.62	3.24	3.5	0.003	0.44	0.0	0.04	9.28	0.00	2.022	1.37	0.85	1.7	98.3	0.0	1.47	0.80	0.83	2.96	3.5	0.003	0.57	0.0	0.04	13.09	0.00	1.935	3.90	1.32	1.5	98.5	0.0	1.61	1.25	0.76	0.81	2.58	9527	1207	5	0	4	0	0	logfile
✔	9B5T	44224	2024-11-15	2024-03-22	3.16	3.62	3.24	3.5	0.003	0.45	0.0	0.04	9.54	0.00	2.024	1.58	0.91	1.9	98.1	0.0	1.13	0.74	0.82	2.66	3.5	0.003	0.50	0.0	0.04	13.01	0.00	1.961	4.62	2.02	1.9	98.1	0.0	1.31	1.19	0.78	0.85	2.43	8935	1133	5	0	4	0	0	logfile
✔	9B5E	44209	2024-11-16	2024-03-22	2.81	3.27	2.83	3.1	0.003	0.44	0.0	0.04	9.40	0.00	2.037	1.39	1.15	1.7	98.3	0.0	1.33	0.67	0.74	3.55	3.1	0.004	0.53	0.0	0.04	13.17	0.00	2.000	2.62	2.21	1.6	98.4	0.0	1.57	1.55	0.76	0.85	3.37	10128	1283	6	0	4	0	0	logfile
✔	9B5G	44211	2024-11-15	2024-03-22	2.67	3.11	2.69	3.0	0.003	0.47	0.0	0.04	10.03	0.00	2.032	1.42	0.94	2.0	98.0	0.0	1.47	0.69	0.80	4.23	3.0	0.004	0.53	0.0	0.04	13.49	0.00	1.984	2.95	1.51	1.5	98.5	0.0	1.45	2.40	0.77	0.87	3.53	9536	1209	6	0	4	0	0	logfile
✔	9B5D	44208	2024-11-16	2024-03-22	2.8	3.27	2.87	3.2	0.004	0.47	0.0	0.04	9.74	0.00	2.012	1.39	1.06	1.5	98.5	0.0	1.46	0.73	0.79	3.66	3.2	0.003	0.53	0.0	0.04	13.73	0.00	1.946	3.17	1.15	1.3	98.7	0.0	1.50	1.15	0.79	0.87	3.04	10128	1283	6	0	4	0	0	logfile
✔	9B5i	44213	2024-11-15	2024-03-22	2.7	3.19	2.75	3.0	0.003	0.49	0.0	0.04	9.58	0.00	1.989	1.16	0.85	1.8	98.2	0.0	1.34	0.68	0.77	4.07	3.0	0.003	0.48	0.0	0.04	13.10	0.00	1.993	3.00	1.51	1.5	98.5	0.0	1.47	1.10	0.67	0.78	3.54	9536	1209	7	0	5	0	0	logfile
✔	9B59	44204	2024-11-14	2024-03-22	3.49	3.95	3.48	3.8	0.003	0.43	0.0	0.04	9.73	0.00	1.779	1.86	0.74	3.4	96.6	0.0	1.74	0.82	0.79	1.99	3.8	0.004	0.57	0.0	0.04	13.24	0.00	2.429	5.58	1.66	3.7	96.3	0.0	1.28	0.61	0.83	0.83	1.67	4871	599	4	0	1	0	0	logfile
✔	9B5F	44210	2024-11-15	2024-03-22	2.78	3.21	2.81	3.1	0.004	0.47	0.0	0.04	9.87	0.00	2.027	1.58	0.94	2.1	97.9	0.0	1.49	0.66	0.78	3.78	3.1	0.004	0.52	0.0	0.04	13.09	0.00	1.956	2.79	1.51	1.8	98.2	0.0	1.44	0.26	0.66	0.78	3.40	9536	1209	6	0	4	0	0	logfile
✔	8YRG	39542	2024-11-15	2024-03-21	3.14	2.21	3.09	2.0	0.007	0.69	0.0	0.05	12.79	0.00	2.093	9.25	0.00	7.4	92.6	0.0	-0.87	0.74	0.75	3.71	1.9	0.003	0.62	0.0	0.04	14.96	0.00	2.562	6.08	2.29	4.2	95.8	0.0	0.71	0.94	0.74	0.76	2.96	7977	1079	6	0	1	0	0	logfile

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