Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iJA	35483	2024-11-15	2023-02-26	2.69	3.07	1.13	2.9	0.005	1.10	10.0	0.08	18.23	0.00	1.793	11.25	5.37	4.8	95.1	0.1	0.12	0.65	0.86	3.13	2.9	0.005	0.68	0.0	0.04	17.73	0.00	2.480	8.45	3.05	5.7	94.3	0.0	0.36	0.29	0.68	0.87	3.34	8845	1136	6	0	1	0	0	logfile
✔	8GBJ	29917	2024-11-14	2023-02-26	3.11	3.29	3.11	3.3	0.006	0.82	0.0	0.05	16.14	0.00	2.073	14.62	0.37	2.4	97.6	0.0	0.15	0.67	0.82	3.86	3.3	0.004	0.60	0.0	0.04	16.15	0.00	2.546	11.88	1.36	2.3	97.7	0.0	0.14	0.94	0.66	0.83	2.84	7467	930	8	6	3	0	0	logfile
✔	8iJ3	35463	2024-11-15	2023-02-24	3.28	3.69	1.23	3.6	0.004	1.08	12.0	0.08	17.30	0.01	2.107	7.58	1.71	5.2	94.8	0.0	-0.17	0.71	0.86	2.48	3.6	0.004	0.65	0.0	0.04	17.68	0.00	2.522	4.92	4.17	4.8	95.1	0.1	0.22	0.31	0.73	0.87	2.48	8772	1134	5	0	0	0	0	logfile
✔	8GB3	29912	2024-11-14	2023-02-24	3.7	2.58	—	1.8	0.003	0.52	0.0	0.04	12.39	0.00	2.202	15.48	4.31	6.9	93.1	0.0	-0.39	0.66	0.61	0.82	1.7	0.004	0.70	0.0	0.04	14.85	0.00	2.495	16.11	4.66	7.5	92.5	0.0	-0.56	0.47	0.67	0.61	0.90	5537	735	3	0	0	0	0	logfile
✔	8GB0	29910	2024-11-20	2023-02-24	4.1	4.11	3.94	3.6	0.005	0.97	0.0	0.05	11.94	0.01	2.282	4.48	0.04	3.4	96.6	0.0	-1.93	0.79	0.74	—	3.6	0.003	0.58	0.0	0.04	11.87	0.00	2.410	8.38	0.00	3.5	96.5	0.0	0.01	1.10	0.79	0.74	—	21566	2878	3	0	0	0	0	logfile
✔	8GAS	29905	2024-11-19	2023-02-23	4.04	4.60	4.12	4.3	0.004	0.68	0.0	0.05	19.30	0.00	2.069	5.80	0.09	4.8	95.1	0.1	-0.68	0.80	0.75	—	4.3	0.003	0.71	0.0	0.05	13.15	0.00	2.437	10.18	0.00	6.3	93.5	0.1	-0.81	1.30	0.82	0.80	—	20253	2430	39	0	93	0	0	logfile
✔	8CNi	16758	2024-11-16	2023-02-23	3.35	3.60	3.33	3.6	0.005	0.48	0.0	0.04	9.35	0.00	2.126	6.38	0.34	3.6	96.4	0.0	-1.46	0.58	0.84	3.88	3.6	0.002	0.53	0.0	0.04	12.82	0.00	2.200	4.72	1.01	2.5	97.5	0.0	0.26	0.76	0.57	0.86	2.76	11397	742	3	0	0	0	5679	logfile
✔	8GAT	29907	2024-11-19	2023-02-23	3.0	2.21	2.93	2.0	0.006	0.98	8.0	0.06	12.17	0.01	1.911	4.96	0.75	7.6	92.2	0.2	-3.67	0.78	0.81	4.39	2.0	0.005	0.67	0.0	0.05	14.32	0.00	2.587	3.22	3.77	5.8	94.0	0.2	-1.65	0.52	0.80	0.83	3.94	19496	2484	16	0	16	0	0	logfile
✔	8iHU	35459	2024-11-13	2023-02-23	2.97	2.96	2.80	3.2	0.005	0.72	0.0	0.05	12.54	0.00	2.039	9.90	0.00	20.0	80.0	0.0	-5.66	0.42	0.86	5.85	3.1	0.003	0.71	0.0	0.05	15.93	0.00	2.639	5.61	0.61	17.1	82.9	0.0	-4.13	1.05	0.43	0.90	5.15	1527	216	3	0	0	0	0	logfile
✔	8iHN	35450	2024-11-17	2023-02-23	3.37	3.86	3.54	3.7	0.005	0.89	2.0	0.05	14.38	0.00	1.954	7.78	0.34	3.9	96.0	0.1	-1.33	0.76	0.80	2.71	3.7	0.003	0.59	0.0	0.04	16.03	0.00	1.944	4.60	1.97	3.5	96.5	0.0	0.76	0.49	0.79	0.82	1.76	14611	1909	8	0	2	0	0	logfile
✔	8GAU	29908	2024-11-14	2023-02-23	3.6	2.50	3.56	2.1	0.006	1.04	1.0	0.06	10.37	0.02	2.285	3.47	0.96	10.1	89.5	0.4	-4.38	0.67	0.77	3.32	2.2	0.005	1.09	1.0	0.06	15.62	0.00	2.323	6.71	4.68	8.1	91.9	0.0	-2.38	1.27	0.67	0.77	2.30	6604	851	6	0	1	0	0	logfile
✔	8CNK	16759	2024-11-15	2023-02-23	2.97	2.39	2.90	2.9	0.005	0.66	0.0	0.04	10.65	0.00	2.290	3.11	0.00	0.5	99.5	0.0	1.09	0.77	0.75	1.20	2.7	0.003	0.66	0.0	0.04	15.01	0.00	2.586	8.30	1.88	0.8	99.2	0.0	2.70	1.13	0.77	0.78	1.24	8850	1120	10	0	5	0	0	logfile
✔	8GAQ	29904	2024-11-14	2023-02-23	3.73	4.01	3.78	4.0	0.005	0.70	0.0	0.04	16.74	0.00	2.278	5.61	0.15	1.7	98.3	0.0	-3.14	0.69	0.78	2.28	4.0	0.004	0.71	0.0	0.04	17.77	0.00	2.292	7.76	2.90	1.8	98.2	0.0	-0.17	1.16	0.69	0.78	1.21	5825	735	5	0	0	0	0	logfile
✔	8GAP	29903	2024-11-20	2023-02-23	3.8	4.94	3.68	3.3	0.002	0.58	0.0	0.04	19.62	0.00	2.199	12.59	0.21	3.7	96.3	0.0	1.14	0.92	0.84	0.38	3.3	0.003	0.60	0.0	0.04	20.00	0.00	2.166	10.80	1.77	3.9	95.9	0.1	1.12	1.44	0.92	0.85	0.52	20630	2032	9	173	1	0	0	logfile
✔	8iHV	35460	2024-11-13	2023-02-23	3.11	3.08	2.87	3.3	0.005	0.73	0.0	0.05	13.40	0.00	2.395	12.57	0.00	23.9	76.1	0.0	-6.37	0.39	0.84	6.17	3.3	0.004	0.72	0.0	0.05	15.28	0.00	2.446	3.14	3.21	17.9	82.1	0.0	-4.92	0.91	0.40	0.86	6.09	1446	207	3	0	0	0	0	logfile
✔	8iHJ	35446	2024-11-15	2023-02-22	3.07	3.50	3.25	3.5	0.002	0.47	0.0	0.04	16.68	0.00	2.152	5.68	0.11	3.3	96.7	0.0	-0.90	0.67	0.86	2.64	3.5	0.002	0.52	0.0	0.04	16.94	0.00	2.534	4.77	3.56	3.3	96.7	0.0	0.06	0.36	0.61	0.83	2.14	8509	1122	6	0	1	0	0	logfile
✔	8GA0	29883	2024-11-14	2023-02-22	3.5	3.76	3.70	3.7	0.004	0.84	0.0	0.05	14.18	0.01	2.274	4.15	0.00	4.8	95.2	0.0	-6.86	0.65	0.78	1.71	3.7	0.003	0.66	0.0	0.04	15.84	0.00	2.529	7.19	2.72	3.3	96.7	0.0	-2.00	0.48	0.62	0.76	1.21	6598	882	2	0	0	0	0	logfile
✔	8GA3	29885	2024-11-14	2023-02-22	3.1	3.32	3.21	3.3	0.005	0.89	0.0	0.05	14.76	0.01	2.294	4.25	0.00	7.0	93.0	0.0	-6.60	0.65	0.81	2.52	3.3	0.003	0.68	0.0	0.04	15.73	0.00	2.532	6.18	0.91	6.6	93.4	0.0	-0.73	0.40	0.60	0.81	1.58	6590	886	4	0	4	0	0	logfile
✔	8iHF	35443	2024-11-15	2023-02-22	2.97	3.26	3.05	3.3	0.003	0.53	0.0	0.04	17.37	0.00	2.218	6.05	0.11	3.8	96.2	0.0	-0.41	0.69	0.85	2.78	3.3	0.003	0.58	0.0	0.04	17.75	0.00	2.606	5.88	3.32	2.8	97.2	0.0	0.34	0.91	0.65	0.85	2.55	8691	1131	6	0	2	0	0	logfile
✔	8iHK	35447	2024-11-13	2023-02-22	3.21	3.56	3.40	3.6	0.003	0.57	0.0	0.04	16.21	0.00	2.246	4.47	0.00	2.8	97.2	0.0	-0.99	0.51	0.79	1.56	3.6	0.003	0.58	0.0	0.04	17.40	0.00	2.624	3.80	5.51	3.6	96.4	0.0	0.88	0.37	0.48	0.78	1.01	2253	283	2	0	1	0	0	logfile

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