Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GA0	29883	2024-11-14	2023-02-22	3.5	3.76	3.70	3.7	0.004	0.84	0.0	0.05	14.18	0.01	2.274	4.15	0.00	4.8	95.2	0.0	-6.86	0.65	0.78	1.71	3.7	0.003	0.66	0.0	0.04	15.84	0.00	2.529	7.19	2.72	3.3	96.7	0.0	-2.00	0.48	0.62	0.76	1.21	6598	882	2	0	0	0	0	logfile
✔	8G9Y	29882	2024-11-18	2023-02-22	4.28	5.75	4.38	4.3	0.008	1.34	4.0	0.07	19.16	0.01	2.193	9.13	0.00	9.6	90.3	0.1	-4.83	0.87	0.84	—	4.3	0.003	0.74	0.0	0.04	12.53	0.00	2.398	11.83	0.00	6.9	93.1	0.0	-1.69	1.19	0.87	0.85	—	17135	1983	53	0	120	0	0	logfile
✔	8iHB	35442	2024-11-15	2023-02-22	2.85	3.06	2.88	3.1	0.004	0.54	0.0	0.04	17.04	0.00	2.202	6.32	0.44	3.5	96.5	0.0	-0.70	0.64	0.86	3.13	3.1	0.003	0.57	0.0	0.04	17.41	0.00	2.600	5.74	3.74	2.6	97.4	0.0	0.60	0.88	0.65	0.86	2.79	8708	1131	6	0	2	0	0	logfile
✔	8G9W	29880	2024-11-18	2023-02-22	4.66	7.51	4.84	4.7	0.008	1.36	3.0	0.07	19.42	0.01	2.186	11.27	0.00	8.8	91.1	0.1	-4.89	0.86	0.81	—	4.7	0.003	0.74	0.0	0.04	12.48	0.00	2.356	11.03	0.00	6.3	93.7	0.0	-1.86	1.21	0.87	0.84	—	17135	1983	53	0	120	0	0	logfile
✔	8iHH	35444	2024-11-15	2023-02-22	3.06	3.40	3.17	3.4	0.003	0.53	0.0	0.04	16.53	0.00	2.165	6.84	0.22	3.7	96.3	0.0	-0.71	0.67	0.82	3.46	3.4	0.003	0.56	0.0	0.04	17.03	0.00	2.553	5.25	3.22	3.0	97.0	0.0	0.20	1.07	0.67	0.82	3.27	8670	1131	6	0	2	0	0	logfile
✔	8iHi	35445	2024-11-15	2023-02-22	3.11	3.43	3.22	3.5	0.003	0.53	0.0	0.04	16.78	0.01	2.221	5.72	0.22	2.8	97.2	0.0	-0.60	0.68	0.83	2.69	3.5	0.004	0.63	0.0	0.04	16.85	0.00	2.546	5.37	2.90	3.5	96.5	0.0	0.36	0.33	0.65	0.82	2.33	8665	1131	6	0	2	0	0	logfile
✔	8iHJ	35446	2024-11-15	2023-02-22	3.07	3.50	3.25	3.5	0.002	0.47	0.0	0.04	16.68	0.00	2.152	5.68	0.11	3.3	96.7	0.0	-0.90	0.67	0.86	2.64	3.5	0.002	0.52	0.0	0.04	16.94	0.00	2.534	4.77	3.56	3.3	96.7	0.0	0.06	0.36	0.61	0.83	2.14	8509	1122	6	0	1	0	0	logfile
✔	8iHF	35443	2024-11-15	2023-02-22	2.97	3.26	3.05	3.3	0.003	0.53	0.0	0.04	17.37	0.00	2.218	6.05	0.11	3.8	96.2	0.0	-0.41	0.69	0.85	2.78	3.3	0.003	0.58	0.0	0.04	17.75	0.00	2.606	5.88	3.32	2.8	97.2	0.0	0.34	0.91	0.65	0.85	2.55	8691	1131	6	0	2	0	0	logfile
✔	8iHK	35447	2024-11-13	2023-02-22	3.21	3.56	3.40	3.6	0.003	0.57	0.0	0.04	16.21	0.00	2.246	4.47	0.00	2.8	97.2	0.0	-0.99	0.51	0.79	1.56	3.6	0.003	0.58	0.0	0.04	17.40	0.00	2.624	3.80	5.51	3.6	96.4	0.0	0.88	0.37	0.48	0.78	1.01	2253	283	2	0	1	0	0	logfile
✔	8GA5	29890	2024-11-14	2023-02-22	2.6	2.87	2.69	2.9	0.005	0.80	0.0	0.05	13.67	0.01	2.279	3.55	0.00	1.9	98.1	0.0	-5.58	0.68	0.87	4.21	2.9	0.003	0.60	0.0	0.04	15.37	0.00	2.607	7.82	1.33	1.0	99.0	0.0	2.38	0.93	0.59	0.85	3.61	6789	900	6	0	6	29	0	logfile
✔	8G94	29861	2024-11-15	2023-02-21	3.15	3.43	3.12	3.3	0.006	0.72	0.0	0.05	13.02	0.00	2.206	6.51	0.00	4.1	95.9	0.0	-2.32	0.70	0.87	3.37	3.3	0.003	0.61	0.0	0.04	15.16	0.00	2.560	7.38	1.80	3.3	96.7	0.0	0.66	0.96	0.71	0.89	2.73	9222	1187	7	0	0	0	0	logfile
✔	8CMT	16745	2024-11-18	2023-02-21	3.04	3.45	3.15	3.3	0.012	1.74	4.0	0.09	13.75	0.03	1.953	1.39	1.81	3.5	96.3	0.1	-0.21	0.73	0.79	4.31	3.3	0.003	0.58	0.0	0.04	14.90	0.00	2.477	4.28	1.04	2.8	97.1	0.0	0.33	1.69	0.75	0.87	3.53	16518	2058	4	0	0	0	0	logfile
✔	8G9R	29874	2024-11-14	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.003	0.73	0.0	0.05	16.85	0.01	2.576	13.02	2.05	8.0	92.0	0.0	-3.77	2.57	0.26	0.34	2.06	3570	455	5	0	0	0	0	logfile
✔	8G92	29860	2024-11-14	2023-02-21	3.6	3.86	3.44	3.8	0.005	0.68	0.0	0.04	13.63	0.00	2.219	8.32	0.00	2.4	97.6	0.0	-1.13	0.56	0.81	3.18	3.8	0.004	0.66	0.0	0.04	15.20	0.00	2.580	7.24	3.27	1.5	98.5	0.0	2.29	0.48	0.56	0.81	2.64	3211	415	2	0	1	0	0	logfile
✔	8iFZ	35427	2024-11-16	2023-02-20	2.85	3.79	3.41	3.2	0.004	0.60	0.0	0.04	17.66	0.01	2.185	5.99	2.31	3.8	96.1	0.1	-1.72	0.73	0.76	1.98	3.3	0.003	0.69	0.0	0.04	17.31	0.00	2.038	5.43	2.89	3.2	96.8	0.0	-0.61	2.92	0.75	0.87	2.15	6506	789	3	0	6	0	0	logfile
✔	8G8W	29857	2024-11-14	2023-02-20	3.8	4.07	3.71	4.0	0.004	0.69	0.0	0.05	17.42	0.00	2.234	5.38	0.18	1.8	98.2	0.0	1.75	0.72	0.82	1.89	4.0	0.003	0.56	0.0	0.04	16.25	0.00	2.399	4.32	2.58	2.7	97.3	0.0	1.77	0.90	0.72	0.83	2.07	6471	902	5	0	6	0	0	logfile
✔	8iGG	35432	2024-11-18	2023-02-20	4.09	4.18	4.06	4.1	0.003	0.61	0.0	0.04	15.14	0.00	2.146	9.75	0.00	7.4	92.6	0.0	-0.07	0.74	0.82	—	4.1	0.003	0.64	0.0	0.04	15.39	0.00	2.492	7.92	0.00	6.9	93.0	0.1	-0.05	0.35	0.75	0.82	—	15998	2054	4	0	0	0	0	logfile
✔	8G8Y	29858	2024-11-17	2023-02-20	3.8	3.46	4.04	3.4	0.003	0.57	0.0	0.04	16.78	0.00	2.142	5.66	0.72	1.2	98.8	0.0	2.57	0.52	0.86	2.49	3.4	0.003	0.59	0.0	0.04	16.84	0.00	2.307	5.29	3.09	1.0	99.0	0.0	3.06	0.41	0.53	0.86	2.50	13717	1715	12	0	0	0	0	logfile
✔	8CML	16730	2024-11-17	2023-02-20	3.6	3.88	3.60	3.9	0.003	0.66	0.0	0.05	16.47	0.00	2.115	9.39	0.60	5.3	94.5	0.2	-0.48	0.72	0.73	1.78	3.9	0.005	0.69	0.0	0.05	16.75	0.00	2.514	7.98	4.30	6.1	93.8	0.1	-0.33	0.45	0.72	0.75	2.07	13594	1728	5	0	2	0	0	logfile
✔	8iFU	35423	2024-11-14	2023-02-19	2.37	2.61	2.40	2.6	0.017	1.97	12.0	0.14	27.73	0.02	1.417	17.91	16.44	2.7	96.9	0.4	-2.87	0.67	0.84	3.46	2.6	0.003	0.60	0.0	0.04	19.39	0.00	2.197	6.09	3.20	0.9	99.1	0.0	2.84	0.89	0.62	0.86	3.75	6732	777	9	0	57	33	0	logfile

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