Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G6o	29776	2024-11-17	2023-02-15	3.1	2.98	3.00	3.1	0.004	0.69	0.0	0.04	17.30	0.00	2.107	3.87	0.00	2.4	97.6	0.0	1.88	0.47	0.78	2.94	3.1	0.002	0.48	0.0	0.04	17.68	0.00	2.179	3.65	0.70	2.7	97.3	0.0	2.60	0.30	0.47	0.80	2.72	13132	845	5	0	0	0	6522	logfile
✔	8iES	35392	2024-11-15	2023-02-15	3.73	4.01	3.68	4.0	0.003	1.16	0.0	0.04	13.70	0.00	2.268	5.19	0.00	6.0	94.0	0.0	-3.84	0.60	0.66	0.28	3.9	0.003	1.01	0.0	0.04	16.25	0.01	1.921	7.29	1.71	8.9	91.1	0.0	-1.20	1.55	0.67	0.78	0.99	7965	1026	2	0	3	0	0	logfile
✔	8G6G	29767	2024-11-17	2023-02-15	2.93	3.16	2.92	3.1	0.003	0.57	0.0	0.04	28.34	0.00	2.238	4.36	1.16	2.1	97.9	0.0	2.83	0.86	0.86	2.41	3.1	0.005	0.59	0.0	0.04	28.23	0.00	2.203	4.10	2.03	1.6	98.4	0.0	2.79	0.17	0.88	0.89	2.44	12985	825	11	314	0	0	0	logfile
✔	8iEJ	35383	2024-11-17	2023-02-15	3.12	3.65	3.13	3.1	0.006	0.64	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	3.1	0.003	0.64	0.0	0.04	26.72	0.00	2.125	10.08	1.56	2.6	97.4	0.0	1.96	0.46	0.90	0.87	1.27	14086	1030	15	294	4	0	0	logfile
✔	8G6Q	29778	2024-11-16	2023-02-15	3.41	3.90	3.43	3.6	0.003	0.61	0.0	0.04	27.96	0.00	2.164	9.72	0.14	3.2	96.8	0.0	2.17	0.86	0.83	0.81	3.6	0.004	0.60	0.0	0.03	27.80	0.00	2.064	9.10	3.61	3.2	96.8	0.0	2.08	0.35	0.88	0.85	0.72	12485	825	11	290	0	0	0	logfile
✔	8G6E	29764	2024-11-19	2023-02-15	2.18	1.87	2.24	2.0	0.004	0.60	0.0	0.04	17.67	0.00	1.943	3.00	0.63	2.0	98.0	0.0	0.88	0.69	0.85	5.05	2.0	0.005	0.69	0.0	0.05	18.16	0.00	2.462	4.48	2.19	1.9	98.1	0.0	1.05	0.39	0.70	0.85	5.06	52266	6490	62	0	6	218	0	logfile
✔	8iED	35380	2024-11-16	2023-02-15	3.33	3.65	3.34	3.7	0.006	0.77	0.0	0.05	14.18	0.01	2.166	4.69	0.00	5.2	94.8	0.0	-0.47	0.58	0.72	1.64	3.7	0.003	0.65	0.0	0.04	15.82	0.00	2.460	9.80	2.11	4.9	95.1	0.0	0.55	0.70	0.57	0.75	1.54	10694	1396	8	0	2	0	0	logfile
✔	8iEB	35377	2024-11-14	2023-02-15	3.03	2.34	3.03	3.0	0.008	0.91	0.0	0.05	15.36	0.01	2.198	5.16	0.00	3.3	96.7	0.0	0.96	0.73	0.79	2.39	2.9	0.003	0.69	1.0	0.04	16.08	0.00	2.552	7.79	1.63	2.7	97.3	0.0	2.41	0.40	0.73	0.79	1.49	4416	558	4	0	2	0	0	logfile
✔	8iEo	35388	2024-11-18	2023-02-15	3.78	3.89	3.63	3.9	0.004	1.20	0.0	0.04	15.04	0.00	2.029	3.19	0.11	3.8	96.2	0.0	0.87	0.58	0.64	0.53	3.9	0.004	1.13	1.0	0.04	15.87	0.01	1.879	4.97	2.04	7.0	92.9	0.1	-0.31	0.73	0.64	0.74	0.81	16260	1031	2	0	3	0	8260	logfile
✔	8G6R	29779	2024-11-15	2023-02-15	3.4	4.07	3.37	3.8	0.005	0.51	0.0	0.04	14.61	0.00	1.919	8.84	0.00	4.7	95.3	0.0	-0.24	0.85	0.84	2.56	3.8	0.003	0.70	0.0	0.04	16.29	0.00	2.516	10.05	2.95	2.5	97.5	0.0	0.52	1.53	0.85	0.86	1.65	9406	1075	6	40	2	0	0	logfile
✔	8G6S	29781	2024-11-16	2023-02-15	3.47	3.91	3.49	3.6	0.004	0.59	0.0	0.03	27.64	0.00	2.149	8.53	0.43	2.5	97.5	0.0	2.29	0.87	0.84	1.28	3.7	0.003	0.59	0.0	0.03	27.44	0.00	2.481	7.47	2.60	3.0	97.0	0.0	2.60	0.40	0.89	0.87	0.75	12480	824	11	290	0	0	0	logfile
✔	8iEQ	35390	2024-11-15	2023-02-15	2.73	2.97	2.75	3.0	0.007	0.79	0.0	0.04	14.18	0.01	2.159	2.89	0.00	3.5	96.5	0.0	3.06	0.49	0.79	2.86	3.0	0.003	0.57	0.0	0.04	15.42	0.01	2.398	4.64	2.53	2.8	97.2	0.0	3.90	1.22	0.55	0.83	2.23	8900	1120	8	0	4	0	0	logfile
✔	8iEM	35386	2024-11-15	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.004	1.05	1.0	0.04	17.08	0.01	2.228	8.33	2.43	7.6	92.4	0.0	-0.92	0.94	0.56	0.71	0.28	7829	1011	2	0	3	0	0	logfile
✔	8CK0	16688	2024-11-14	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.09	0.00	2.414	9.25	4.11	3.6	96.4	0.0	2.05	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	8CK1	16689	2024-11-17	2023-02-14	3.9	3.75	3.90	3.8	0.004	0.75	0.0	0.05	16.95	0.00	2.200	15.75	0.59	8.4	91.6	0.0	-2.07	0.42	0.81	1.48	3.7	0.005	0.72	0.0	0.05	17.88	0.00	2.445	12.66	5.05	9.7	90.3	0.0	-1.81	0.53	0.42	0.82	1.81	12580	1616	6	0	0	0	0	logfile
✔	8G5V	29756	2024-11-17	2023-02-14	3.0	2.99	4.36	3.8	0.004	0.61	0.0	0.04	12.94	0.01	2.223	7.63	0.00	2.9	97.1	0.0	2.14	0.25	0.24	0.28	3.1	0.003	0.75	0.0	0.04	16.67	0.01	2.467	11.22	1.11	2.3	97.7	0.0	1.37	3.07	0.47	0.78	2.28	13739	1718	12	0	0	0	0	logfile
✔	8G5M	29749	2024-11-17	2023-02-13	2.58	3.52	2.74	3.3	0.006	1.04	0.0	0.09	18.45	0.02	2.115	7.94	1.31	10.0	89.9	0.1	-0.67	0.74	0.69	2.36	3.3	0.003	0.85	0.0	0.05	18.85	0.00	2.471	8.74	2.20	9.6	90.3	0.1	-0.44	1.96	0.73	0.78	2.08	14673	1747	5	46	0	0	0	logfile
✔	8G5i	29745	2024-11-17	2023-02-13	2.75	3.37	2.79	3.1	0.004	0.80	0.0	0.04	17.63	0.01	2.085	7.69	1.33	6.8	93.1	0.1	-0.24	0.75	0.70	1.80	3.1	0.004	0.79	0.0	0.04	18.56	0.00	2.446	11.42	3.16	7.4	92.6	0.1	-0.46	0.45	0.76	0.79	2.03	14084	1671	5	37	0	0	0	logfile
✔	8G5J	29746	2024-11-17	2023-02-13	2.63	3.11	2.61	3.0	0.006	1.04	0.0	0.08	19.27	0.02	2.108	6.23	2.20	5.8	93.9	0.2	-0.53	0.62	0.69	3.06	3.1	0.004	0.67	0.0	0.04	19.73	0.00	2.479	7.60	2.27	6.8	93.0	0.2	-0.12	0.38	0.62	0.77	2.85	14544	1739	5	39	0	0	0	logfile
✔	8iDN	35369	2024-11-14	2023-02-13	3.35	3.49	3.33	3.4	0.003	0.58	0.0	0.05	14.93	0.00	2.120	7.91	0.56	4.4	95.4	0.2	-0.05	0.67	0.76	2.85	3.4	0.002	0.62	0.0	0.04	14.30	0.00	2.319	8.06	1.69	4.4	95.4	0.2	-0.33	0.36	0.67	0.78	2.20	3292	419	4	0	4	0	0	logfile

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