Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G5L	29748	2024-11-17	2023-02-13	3.0	3.41	3.03	3.2	0.009	1.04	0.0	0.07	18.59	0.00	2.075	7.07	2.17	7.8	92.2	0.1	-0.22	0.66	0.55	1.10	3.3	0.004	0.83	0.0	0.05	19.32	0.00	2.346	14.36	5.29	9.0	91.0	0.0	-0.56	1.01	0.71	0.68	1.41	12623	1634	5	39	0	0	0	logfile
✔	8iDN	35369	2024-11-14	2023-02-13	3.35	3.49	3.33	3.4	0.003	0.58	0.0	0.05	14.93	0.00	2.120	7.91	0.56	4.4	95.4	0.2	-0.05	0.67	0.76	2.85	3.4	0.002	0.62	0.0	0.04	14.30	0.00	2.319	8.06	1.69	4.4	95.4	0.2	-0.33	0.36	0.67	0.78	2.20	3292	419	4	0	4	0	0	logfile
✔	8G5J	29746	2024-11-17	2023-02-13	2.63	3.11	2.61	3.0	0.006	1.04	0.0	0.08	19.27	0.02	2.108	6.23	2.20	5.8	93.9	0.2	-0.53	0.62	0.69	3.06	3.1	0.004	0.67	0.0	0.04	19.73	0.00	2.479	7.60	2.27	6.8	93.0	0.2	-0.12	0.38	0.62	0.77	2.85	14544	1739	5	39	0	0	0	logfile
✔	8G5K	29747	2024-11-17	2023-02-13	2.9	2.19	2.93	3.1	0.005	1.07	0.0	0.08	15.61	0.01	2.223	5.64	0.29	8.6	91.3	0.1	-1.76	0.64	0.59	1.90	2.0	0.003	0.80	0.0	0.06	18.47	0.00	2.438	12.26	1.39	10.2	89.7	0.1	-1.27	0.59	0.69	0.67	1.99	13629	1637	5	36	0	0	0	logfile
✔	8G5N	29750	2024-11-17	2023-02-13	2.73	3.64	2.92	3.4	0.006	1.00	0.0	0.08	17.82	0.02	1.871	8.83	1.85	7.5	92.5	0.0	-0.17	0.69	0.60	1.33	3.4	0.003	0.82	0.0	0.04	17.95	0.00	2.389	9.64	2.88	8.2	91.8	0.1	-0.62	2.53	0.69	0.71	1.54	14485	1734	5	38	0	0	0	logfile
✔	8iDA	35361	2024-11-14	2023-02-12	3.2	3.50	3.13	3.5	0.003	0.62	0.0	0.06	20.75	0.02	2.227	5.32	0.38	4.9	95.1	0.0	0.93	0.69	0.84	2.01	3.5	0.003	0.60	0.0	0.04	15.80	0.00	2.499	4.58	1.90	4.7	95.3	0.0	1.50	0.40	0.67	0.86	2.07	7372	935	7	0	8	0	0	logfile
✔	8iDD	35364	2024-11-15	2023-02-12	4.0	4.48	3.92	4.1	0.004	1.02	0.0	0.06	12.75	0.00	2.302	5.78	0.24	4.7	95.3	0.0	-3.26	0.74	0.78	—	4.1	0.003	0.74	0.0	0.04	13.94	0.00	2.434	10.51	1.66	4.7	95.3	0.0	-0.92	0.46	0.74	0.80	—	8768	1199	7	0	2	0	0	logfile
✔	8G5A	29737	2024-11-20	2023-02-12	3.3	3.11	3.23	3.2	0.005	0.69	0.0	0.08	13.26	0.00	2.026	6.92	0.88	3.6	96.4	0.0	-0.23	0.71	0.86	4.21	3.2	0.003	0.59	0.0	0.04	15.04	0.00	2.478	6.65	1.97	3.9	96.1	0.0	-0.11	0.96	0.72	0.89	3.87	21666	2781	12	0	12	0	0	logfile
✔	8iD4	35357	2024-11-15	2023-02-12	3.1	3.26	3.09	3.2	0.004	0.73	1.0	0.05	12.92	0.01	2.217	8.68	0.22	3.7	96.1	0.2	-1.06	0.65	0.79	3.25	3.2	0.003	0.55	0.0	0.04	14.82	0.00	2.483	5.13	1.75	3.2	96.8	0.0	0.23	0.33	0.67	0.82	2.95	8665	1134	6	0	1	1	0	logfile
✔	8G5B	29738	2024-11-15	2023-02-12	3.1	2.83	2.97	3.0	0.006	0.63	1.0	0.05	13.65	0.01	2.208	7.38	0.70	3.5	96.5	0.0	0.40	0.57	0.84	4.24	3.0	0.003	0.61	0.0	0.04	15.75	0.00	2.598	5.47	2.80	3.1	96.9	0.0	0.44	0.39	0.64	0.89	3.71	9009	1171	8	0	2	0	0	logfile
✔	8iD6	35358	2024-11-15	2023-02-12	2.8	2.99	2.85	3.0	0.004	0.67	0.0	0.05	11.40	0.01	2.180	7.91	0.00	0.7	99.3	0.0	0.86	0.68	0.81	3.66	3.0	0.005	0.65	0.0	0.04	14.23	0.00	2.421	4.56	2.07	2.7	97.3	0.0	1.26	0.51	0.67	0.83	3.65	8727	1139	6	0	1	0	0	logfile
✔	8iD8	35359	2024-11-15	2023-02-12	3.0	3.25	3.12	3.3	0.005	0.64	0.0	0.04	13.41	0.00	1.393	8.92	0.33	3.3	96.7	0.0	-0.43	0.67	0.78	2.54	3.3	0.002	0.58	0.0	0.04	15.56	0.00	2.366	4.87	1.55	2.9	97.1	0.0	0.59	1.10	0.61	0.78	2.25	8635	1137	6	0	1	0	0	logfile
✔	8iDB	35362	2024-11-14	2023-02-12	3.9	4.38	3.73	4.2	0.005	1.04	0.0	0.06	11.65	0.01	2.256	5.21	0.32	5.8	93.7	0.5	-3.59	0.69	0.73	0.55	4.2	0.003	0.68	0.0	0.04	14.28	0.00	2.554	9.51	2.59	6.3	93.4	0.3	-1.18	0.41	0.70	0.75	0.64	6835	982	4	0	0	0	0	logfile
✔	8iD3	35356	2024-11-15	2023-02-12	3.1	3.38	3.17	3.3	0.005	0.85	0.0	0.05	13.65	0.01	2.199	8.84	0.76	3.9	96.1	0.0	-1.42	0.65	0.79	3.03	3.3	0.003	0.59	0.0	0.04	14.99	0.00	2.481	4.85	1.63	3.9	96.1	0.0	0.16	0.39	0.65	0.80	2.30	8742	1141	6	0	1	0	0	logfile
✔	8iD9	35360	2024-11-15	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	2.9	0.006	0.68	0.0	0.05	15.23	0.01	2.494	5.80	2.47	3.7	96.3	0.0	0.38	1.48	0.89	0.87	3.27	7996	1095	6	0	1	0	0	logfile
✔	8G59	29736	2024-11-15	2023-02-12	2.64	2.58	—	2.9	0.005	0.73	1.0	0.05	12.17	0.01	1.930	10.26	0.22	3.8	96.1	0.1	-0.15	0.82	0.76	2.19	2.9	0.004	0.67	0.0	0.04	15.17	0.00	2.471	6.96	1.43	4.1	95.9	0.0	0.91	0.49	0.81	0.79	1.77	8583	1118	6	0	1	0	0	logfile
✔	8G57	29735	2024-11-17	2023-02-11	3.07	3.58	3.10	3.3	0.004	0.65	0.0	0.04	25.92	0.01	1.682	7.99	0.12	3.1	96.1	0.9	-0.11	0.81	0.75	2.31	3.2	0.004	0.63	0.0	0.04	26.98	0.00	2.203	7.99	1.66	3.8	95.9	0.3	1.20	0.57	0.86	0.89	1.83	14402	1067	11	300	0	0	0	logfile
✔	8G4M	29725	2024-11-20	2023-02-10	2.95	3.53	2.95	3.3	0.004	0.64	0.0	0.05	18.25	0.00	2.132	4.25	2.43	2.2	97.8	0.0	0.60	0.80	0.88	3.59	3.3	0.005	0.78	1.0	0.04	15.54	0.00	2.032	4.39	2.14	2.1	97.9	0.0	0.77	0.34	0.80	0.88	3.50	20584	2432	61	0	119	0	0	logfile
✔	8G4T	29731	2024-11-20	2023-02-10	2.81	3.51	2.81	3.2	0.005	0.66	0.0	0.05	17.61	0.00	2.105	4.00	1.38	3.4	96.6	0.0	-0.34	0.83	0.88	3.35	3.2	0.002	0.63	0.0	0.04	15.26	0.00	2.468	2.43	1.71	2.7	97.3	0.0	0.22	1.15	0.82	0.85	2.97	20739	2437	63	0	129	0	0	logfile
✔	8iBZ	35350	2024-11-16	2023-02-10	3.04	3.25	3.07	3.1	0.003	0.60	0.0	0.04	23.46	0.00	2.190	9.49	0.29	4.3	95.6	0.1	0.68	0.73	0.74	1.64	3.1	0.002	0.54	0.0	0.03	22.60	0.00	2.417	7.52	2.06	3.3	96.5	0.1	1.07	0.39	0.75	0.79	1.54	10273	817	3	180	1	0	0	logfile

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