Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CL1	16709	2024-11-17	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.23	0.01	2.541	7.98	0.90	2.0	97.6	0.5	2.06	0.68	0.64	0.77	3.05	10494	1362	12	0	0	0	0	logfile
✔	8CLK	16715	2024-11-16	2023-02-16	3.5	3.77	3.61	3.7	0.005	0.75	0.0	0.05	13.29	0.01	2.217	4.17	0.00	2.6	97.4	0.0	-1.42	0.76	0.77	2.16	3.7	0.003	0.80	0.0	0.04	15.88	0.00	2.399	11.90	1.51	2.3	97.7	0.0	0.14	2.74	0.76	0.75	1.75	10799	1344	4	0	0	0	0	logfile
✔	8CL4	16712	2024-11-19	2023-02-16	3.14	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	3.6	0.003	0.68	0.0	0.04	17.30	0.01	2.471	7.82	1.55	1.6	98.4	0.0	1.55	2.43	0.52	0.79	1.53	13335	1725	15	0	0	0	0	logfile
✔	8CKZ	16707	2024-11-17	2023-02-16	3.07	3.27	3.09	3.2	0.005	0.90	0.0	0.05	12.35	0.01	1.966	3.43	0.00	1.1	98.9	0.0	-1.16	0.50	0.80	4.33	3.2	0.003	0.56	0.0	0.04	15.95	0.00	2.407	5.96	1.95	0.7	99.3	0.0	1.68	1.44	0.50	0.82	4.01	13910	1800	15	0	0	0	0	logfile
✔	8iEW	35374	2024-11-14	2023-02-16	3.1	2.10	3.14	1.8	0.005	0.67	0.0	0.04	22.79	0.01	2.156	9.70	0.47	9.3	90.7	0.0	-0.52	0.75	0.76	2.99	1.9	0.003	0.60	0.0	0.04	22.54	0.01	2.506	6.43	4.49	9.3	90.7	0.0	0.47	0.72	0.76	0.78	2.57	5321	498	4	65	0	0	0	logfile
✔	8G7C	29806	2024-11-18	2023-02-16	4.1	4.39	4.21	4.2	0.004	0.73	0.0	0.05	12.95	0.01	2.076	15.52	0.10	4.8	95.1	0.1	-1.27	0.68	0.62	—	4.2	0.003	0.68	0.0	0.05	12.85	0.00	2.438	10.27	0.00	6.1	93.8	0.1	-1.40	0.84	0.72	0.72	—	17466	2193	9	0	12	0	0	logfile
✔	8G6V	29785	2024-11-17	2023-02-16	3.4	3.24	—	3.3	0.003	0.60	0.0	0.04	16.35	0.01	2.084	5.69	0.85	2.5	97.5	0.0	1.60	0.51	0.89	2.44	3.2	0.003	0.57	0.0	0.04	16.46	0.00	2.393	4.99	2.49	2.8	97.2	0.0	2.72	1.18	0.51	0.89	2.40	13736	1716	12	0	0	0	0	logfile
✔	8G7A	29804	2024-11-18	2023-02-16	3.3	3.59	3.42	3.5	0.006	0.83	0.0	0.05	13.26	0.01	1.778	23.01	0.67	4.1	95.7	0.2	-1.47	0.51	0.54	2.53	3.5	0.004	0.65	0.0	0.05	14.63	0.00	2.379	8.52	2.56	4.3	95.6	0.1	-1.23	0.97	0.63	0.69	2.52	16237	2046	8	0	2	0	0	logfile
✔	8CL0	16708	2024-11-17	2023-02-16	3.12	3.34	3.14	3.4	0.005	0.87	0.0	0.06	12.80	0.01	2.091	3.45	0.18	0.2	99.8	0.0	-0.50	0.64	0.77	4.37	3.4	0.003	0.54	0.0	0.04	15.49	0.00	2.540	6.90	1.00	0.7	99.3	0.0	2.10	0.52	0.63	0.79	3.18	10387	1355	12	0	0	0	0	logfile
✔	8CKW	16704	2024-11-17	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.004	0.67	0.0	0.04	16.90	0.00	2.471	8.78	1.20	1.1	98.9	0.0	1.03	1.19	0.58	0.85	2.44	13890	1785	15	0	0	0	0	logfile
✔	8G7B	29805	2024-11-18	2023-02-16	3.2	3.61	3.45	3.6	0.004	0.73	0.0	0.05	14.80	0.01	2.030	14.09	0.35	4.2	95.6	0.2	-1.49	0.57	0.71	2.48	3.6	0.004	0.64	0.0	0.05	15.54	0.00	2.314	7.46	2.64	4.8	95.0	0.2	-1.25	0.56	0.59	0.77	2.37	15406	1928	8	0	7	0	0	logfile
✔	8CL2	16710	2024-11-19	2023-02-16	3.45	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.54	0.79	2.49	3.6	0.003	0.67	0.0	0.04	17.37	0.00	2.490	8.62	2.32	1.7	98.3	0.0	1.52	2.42	0.56	0.84	1.57	13335	1725	15	0	0	0	0	logfile
✔	8G78	29802	2024-11-18	2023-02-16	3.4	3.75	3.56	3.7	0.007	0.87	0.0	0.06	16.91	0.01	1.884	14.64	1.04	8.5	90.8	0.6	-2.17	0.61	0.78	2.01	3.8	0.003	0.71	0.0	0.05	16.63	0.00	2.481	8.91	5.02	6.8	93.0	0.2	-1.65	0.58	0.64	0.80	2.49	17036	2125	12	0	35	0	0	logfile
✔	8CKY	16706	2024-11-16	2023-02-16	2.6	3.00	2.57	2.9	0.004	0.82	0.0	0.05	12.58	0.01	1.934	7.36	0.54	0.5	99.5	0.0	0.21	0.62	0.77	5.97	2.9	0.003	0.56	0.0	0.04	17.77	0.00	2.587	7.46	3.99	0.6	99.4	0.0	1.91	0.58	0.62	0.79	4.85	10338	1344	12	0	0	0	0	logfile
✔	8G6E	29764	2024-11-19	2023-02-15	2.18	1.87	2.24	2.0	0.004	0.60	0.0	0.04	17.67	0.00	1.943	3.00	0.63	2.0	98.0	0.0	0.88	0.69	0.85	5.05	2.0	0.005	0.69	0.0	0.05	18.16	0.00	2.462	4.48	2.19	1.9	98.1	0.0	1.05	0.39	0.70	0.85	5.06	52266	6490	62	0	6	218	0	logfile
✔	8iEo	35388	2024-11-18	2023-02-15	3.78	3.89	3.63	3.9	0.004	1.20	0.0	0.04	15.04	0.00	2.029	3.19	0.11	3.8	96.2	0.0	0.87	0.58	0.64	0.53	3.9	0.004	1.13	1.0	0.04	15.87	0.01	1.879	4.97	2.04	7.0	92.9	0.1	-0.31	0.73	0.64	0.74	0.81	16260	1031	2	0	3	0	8260	logfile
✔	8G6o	29776	2024-11-17	2023-02-15	3.1	2.98	3.00	3.1	0.004	0.69	0.0	0.04	17.30	0.00	2.107	3.87	0.00	2.4	97.6	0.0	1.88	0.47	0.78	2.94	3.1	0.002	0.48	0.0	0.04	17.68	0.00	2.179	3.65	0.70	2.7	97.3	0.0	2.60	0.30	0.47	0.80	2.72	13132	845	5	0	0	0	6522	logfile
✔	8iEM	35386	2024-11-15	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.004	1.05	1.0	0.04	17.08	0.01	2.228	8.33	2.43	7.6	92.4	0.0	-0.92	0.94	0.56	0.71	0.28	7829	1011	2	0	3	0	0	logfile
✔	8iEJ	35383	2024-11-17	2023-02-15	3.12	3.65	3.13	3.1	0.006	0.64	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	3.1	0.003	0.64	0.0	0.04	26.72	0.00	2.125	10.08	1.56	2.6	97.4	0.0	1.96	0.46	0.90	0.87	1.27	14086	1030	15	294	4	0	0	logfile
✔	8G6i	29770	2024-11-17	2023-02-15	4.23	4.53	4.35	4.2	0.003	0.68	0.0	0.05	13.13	0.01	2.143	10.55	0.00	9.3	90.4	0.3	-3.49	0.69	0.42	—	4.2	0.005	0.90	0.0	0.05	14.30	0.01	2.465	24.34	0.00	14.7	85.0	0.4	-4.03	2.56	0.74	0.58	—	13287	1665	5	0	4	0	0	logfile

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